Wall clock time and date at job start Mon Mar 30 2020 04:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46965 * 110.99763 * 2 1 4 4 C 1.53053 * 109.36318 * 183.18629 * 3 2 1 5 5 N 1.46962 * 109.36445 * 301.60007 * 4 3 2 6 6 C 1.46952 * 110.88080 * 59.32075 * 5 4 3 7 7 C 1.46955 * 111.00175 * 123.79914 * 2 1 3 8 8 H 1.09001 * 109.48580 * 296.78234 * 7 2 1 9 9 C 1.50692 * 109.48917 * 56.84753 * 7 2 1 10 10 O 1.21287 * 120.00053 * 27.71754 * 9 7 2 11 11 N 1.34779 * 120.00430 * 207.72269 * 9 7 2 12 12 C 1.46494 * 120.00290 * 179.97438 * 11 9 7 13 13 C 1.53004 * 109.47185 * 179.97438 * 12 11 9 14 14 C 1.50702 * 109.46954 * 179.97438 * 13 12 11 15 15 H 1.07992 * 120.00296 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99668 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99978 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00094 * 0.02562 * 16 14 13 19 19 H 1.48507 * 109.47090 * 89.99704 * 18 16 14 20 20 H 1.48493 * 109.47128 * 209.99398 * 18 16 14 21 21 H 1.48494 * 109.47102 * 329.99611 * 18 16 14 22 22 H 1.08992 * 109.47745 * 290.02208 * 1 2 3 23 23 H 1.09007 * 109.47116 * 50.03078 * 1 2 3 24 24 H 1.09001 * 109.47012 * 170.02341 * 1 2 3 25 25 H 1.09001 * 109.48567 * 63.22477 * 3 2 1 26 26 H 1.08996 * 109.51126 * 303.16630 * 3 2 1 27 27 H 1.09001 * 109.48885 * 181.63715 * 4 3 2 28 28 H 1.08993 * 109.49055 * 61.56864 * 4 3 2 29 29 H 1.00897 * 110.99851 * 183.19305 * 5 4 3 30 30 H 1.08999 * 109.49185 * 180.71216 * 6 5 4 31 31 H 1.09000 * 109.48490 * 60.64717 * 6 5 4 32 32 H 0.96997 * 119.99630 * 359.97438 * 11 9 7 33 33 H 1.08998 * 109.47434 * 299.99910 * 12 11 9 34 34 H 1.09007 * 109.47421 * 60.00052 * 12 11 9 35 35 H 1.08998 * 109.47178 * 299.99956 * 13 12 11 36 36 H 1.08998 * 109.46575 * 60.00231 * 13 12 11 37 37 H 0.97003 * 120.00285 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9956 1.3721 0.0000 4 6 3.5234 1.3292 -0.0803 5 7 4.0500 0.5660 1.0599 6 6 3.5234 -0.8060 1.0599 7 6 1.9956 -0.7632 1.1401 8 1 1.6937 -0.2820 2.0703 9 6 1.4505 -2.1675 1.0999 10 8 1.1405 -2.6675 0.0393 11 7 1.3074 -2.8679 2.2424 12 6 0.7770 -4.2329 2.2034 13 6 0.7177 -4.7978 3.6240 14 6 0.1714 -6.2018 3.5839 15 1 -0.1061 -6.6465 2.6397 16 6 0.0259 -6.9186 4.7527 17 7 -0.4512 -8.1436 4.7177 18 14 0.5053 -6.1492 6.3860 19 1 -0.6671 -5.4444 6.9642 20 1 0.9544 -7.2118 7.3209 21 1 1.6093 -5.1796 6.1714 22 1 -0.3634 0.3518 0.9654 23 1 -0.3634 0.6602 -0.7876 24 1 -0.3633 -1.0121 -0.1780 25 1 1.6937 1.8774 0.9174 26 1 1.6013 1.9133 -0.8600 27 1 3.9177 2.3450 -0.0511 28 1 3.8253 0.8481 -1.0105 29 1 5.0590 0.5661 1.0599 30 1 3.9177 -1.3469 1.9201 31 1 3.8254 -1.3113 0.1425 32 1 1.5557 -2.4681 3.0906 33 1 -0.2250 -4.2212 1.7745 34 1 1.4271 -4.8580 1.5911 35 1 1.7198 -4.8096 4.0525 36 1 0.0678 -4.1729 4.2366 37 1 -0.5540 -8.6478 5.5400 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686919194.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:17 Heat of formation + Delta-G solvation = -28.330371 kcal Electronic energy + Delta-G solvation = -17594.046465 eV Core-core repulsion = 14792.170798 eV Total energy + Delta-G solvation = -2801.875666 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.19904 -38.06905 -35.07673 -34.44951 -32.83952 -31.55814 -29.95586 -27.92680 -25.37434 -23.87813 -23.60916 -20.96909 -20.65105 -19.58237 -17.44111 -16.94000 -16.27550 -15.73023 -15.25768 -14.85852 -14.61455 -14.45651 -14.22334 -14.12555 -13.78050 -13.17619 -12.84810 -12.58836 -12.21762 -12.14066 -11.70255 -11.50295 -11.30399 -11.19437 -11.02102 -10.39199 -10.27154 -9.96984 -9.45911 -9.27164 -8.84048 -8.65389 -8.55340 -8.41788 -6.11907 -4.12163 2.83032 3.24614 3.31046 3.32578 3.33627 3.83133 4.03928 4.36937 4.65073 4.79612 4.88555 5.01056 5.10842 5.14794 5.21040 5.36724 5.41166 5.44923 5.57585 5.65317 5.77933 5.98899 6.09175 6.18997 6.54388 6.55701 6.73326 6.75375 6.85888 7.04952 7.13246 7.21856 7.65601 7.89367 8.42659 8.56645 8.92461 9.48183 11.01146 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.040847 B = 0.004710 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.315210 B = 5943.670510 C = 6243.925619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.522 5.522 3 C 0.056 3.944 4 C 0.056 3.944 5 N -0.690 5.690 6 C 0.070 3.930 7 C 0.071 3.929 8 H 0.066 0.934 9 C 0.510 3.490 10 O -0.526 6.526 11 N -0.726 5.726 12 C 0.131 3.869 13 C -0.022 4.022 14 C -0.523 4.523 15 H 0.076 0.924 16 C 0.070 3.930 17 N -0.898 5.898 18 Si 0.882 3.118 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.266 1.266 22 H 0.024 0.976 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.042 0.958 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.042 0.958 29 H 0.348 0.652 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.396 0.604 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.022 0.978 36 H 0.017 0.983 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.595 20.397 -5.709 22.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.247 5.247 3 C -0.072 4.072 4 C -0.074 4.074 5 N -0.322 5.322 6 C -0.060 4.060 7 C -0.042 4.042 8 H 0.084 0.916 9 C 0.294 3.706 10 O -0.401 6.401 11 N -0.377 5.377 12 C 0.009 3.991 13 C -0.060 4.060 14 C -0.562 4.562 15 H 0.094 0.906 16 C -0.132 4.132 17 N -0.537 5.537 18 Si 0.709 3.291 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.191 1.191 22 H 0.043 0.957 23 H 0.088 0.912 24 H 0.102 0.898 25 H 0.060 0.940 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.166 0.834 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.229 0.771 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.040 0.960 36 H 0.035 0.965 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.990 19.849 -6.371 21.987 hybrid contribution 0.485 0.444 1.412 1.557 sum 7.475 20.293 -4.959 22.187 Atomic orbital electron populations 1.22489 0.86369 1.04012 0.99977 1.61884 1.08574 1.12881 1.41404 1.22218 0.94655 0.89150 1.01188 1.22035 0.94743 0.98346 0.92247 1.60480 1.13387 1.13783 1.44541 1.21852 0.92192 0.89926 1.02065 1.21661 0.95803 0.92830 0.93874 0.91605 1.20230 0.78942 0.87031 0.84433 1.90690 1.49262 1.70476 1.29709 1.46380 1.65356 1.17284 1.08639 1.21510 0.98302 0.79085 1.00232 1.19795 0.97242 0.97417 0.91504 1.20918 1.43095 0.96519 0.95635 0.90624 1.24998 0.94453 0.94674 0.99113 1.69903 1.45408 1.10197 1.28154 0.86755 0.79354 0.79217 0.83773 1.20225 1.21249 1.19071 0.95728 0.91241 0.89816 0.93995 0.89933 0.90122 0.93938 0.83423 0.89557 0.93244 0.77110 0.91988 0.91907 0.95968 0.96466 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.11 60.06 0.55 0.79 16 2 N -0.52 -6.76 4.52 -236.13 -1.07 -7.83 16 3 C 0.06 0.56 5.61 -3.76 -0.02 0.54 16 4 C 0.06 0.49 6.72 -3.76 -0.03 0.47 16 5 N -0.69 -6.52 6.90 -113.64 -0.78 -7.30 16 6 C 0.07 0.80 5.98 -3.77 -0.02 0.78 16 7 C 0.07 0.93 2.34 -68.81 -0.16 0.77 16 8 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 9 C 0.51 8.46 6.08 -10.99 -0.07 8.39 16 10 O -0.53 -10.74 15.27 5.55 0.08 -10.65 16 11 N -0.73 -11.94 5.56 -60.29 -0.33 -12.28 16 12 C 0.13 2.66 5.61 -4.04 -0.02 2.64 16 13 C -0.02 -0.50 4.16 -27.88 -0.12 -0.61 16 14 C -0.52 -14.63 9.66 -34.44 -0.33 -14.97 16 15 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 18 Si 0.88 20.98 27.47 -169.99 -4.67 16.32 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 22 H 0.02 0.28 8.12 -51.93 -0.42 -0.14 16 23 H 0.07 0.73 8.03 -51.93 -0.42 0.31 16 24 H 0.08 1.27 6.34 -51.93 -0.33 0.94 16 25 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.35 2.57 8.90 -39.29 -0.35 2.22 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.40 5.48 8.47 -40.82 -0.35 5.13 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 36 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 299.29 15.07 4.51 4.51 Total: -1.00 -32.42 299.29 -7.82 -40.24 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.02 Total: 2.85 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -0.32 Total: 0.69 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -1.41 Total: -53.95 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.65 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.32 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.42 -7.82 -40.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686919194.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.911 kcal (2) G-P(sol) polarization free energy of solvation -32.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds