Wall clock time and date at job start Mon Mar 30 2020 04:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46965 * 110.99763 * 2 1 4 4 C 1.53053 * 109.36318 * 183.18629 * 3 2 1 5 5 N 1.46962 * 109.36445 * 301.60007 * 4 3 2 6 6 C 1.46952 * 110.88080 * 59.32075 * 5 4 3 7 7 C 1.46955 * 111.00175 * 123.79914 * 2 1 3 8 8 H 1.09001 * 109.48580 * 296.78234 * 7 2 1 9 9 C 1.50692 * 109.48917 * 56.84753 * 7 2 1 10 10 O 1.21287 * 120.00053 * 27.71754 * 9 7 2 11 11 N 1.34779 * 120.00430 * 207.72269 * 9 7 2 12 12 C 1.46494 * 120.00290 * 179.97438 * 11 9 7 13 13 C 1.53004 * 109.47185 * 179.97438 * 12 11 9 14 14 C 1.50702 * 109.46954 * 179.97438 * 13 12 11 15 15 H 1.07992 * 120.00296 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99668 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99978 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00094 * 0.02562 * 16 14 13 19 19 H 1.48507 * 109.47090 * 89.99704 * 18 16 14 20 20 H 1.48493 * 109.47128 * 209.99398 * 18 16 14 21 21 H 1.48494 * 109.47102 * 329.99611 * 18 16 14 22 22 H 1.08992 * 109.47745 * 290.02208 * 1 2 3 23 23 H 1.09007 * 109.47116 * 50.03078 * 1 2 3 24 24 H 1.09001 * 109.47012 * 170.02341 * 1 2 3 25 25 H 1.09001 * 109.48567 * 63.22477 * 3 2 1 26 26 H 1.08996 * 109.51126 * 303.16630 * 3 2 1 27 27 H 1.09001 * 109.48885 * 181.63715 * 4 3 2 28 28 H 1.08993 * 109.49055 * 61.56864 * 4 3 2 29 29 H 1.00897 * 110.99851 * 183.19305 * 5 4 3 30 30 H 1.08999 * 109.49185 * 180.71216 * 6 5 4 31 31 H 1.09000 * 109.48490 * 60.64717 * 6 5 4 32 32 H 0.96997 * 119.99630 * 359.97438 * 11 9 7 33 33 H 1.08998 * 109.47434 * 299.99910 * 12 11 9 34 34 H 1.09007 * 109.47421 * 60.00052 * 12 11 9 35 35 H 1.08998 * 109.47178 * 299.99956 * 13 12 11 36 36 H 1.08998 * 109.46575 * 60.00231 * 13 12 11 37 37 H 0.97003 * 120.00285 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9956 1.3721 0.0000 4 6 3.5234 1.3292 -0.0803 5 7 4.0500 0.5660 1.0599 6 6 3.5234 -0.8060 1.0599 7 6 1.9956 -0.7632 1.1401 8 1 1.6937 -0.2820 2.0703 9 6 1.4505 -2.1675 1.0999 10 8 1.1405 -2.6675 0.0393 11 7 1.3074 -2.8679 2.2424 12 6 0.7770 -4.2329 2.2034 13 6 0.7177 -4.7978 3.6240 14 6 0.1714 -6.2018 3.5839 15 1 -0.1061 -6.6465 2.6397 16 6 0.0259 -6.9186 4.7527 17 7 -0.4512 -8.1436 4.7177 18 14 0.5053 -6.1492 6.3860 19 1 -0.6671 -5.4444 6.9642 20 1 0.9544 -7.2118 7.3209 21 1 1.6093 -5.1796 6.1714 22 1 -0.3634 0.3518 0.9654 23 1 -0.3634 0.6602 -0.7876 24 1 -0.3633 -1.0121 -0.1780 25 1 1.6937 1.8774 0.9174 26 1 1.6013 1.9133 -0.8600 27 1 3.9177 2.3450 -0.0511 28 1 3.8253 0.8481 -1.0105 29 1 5.0590 0.5661 1.0599 30 1 3.9177 -1.3469 1.9201 31 1 3.8254 -1.3113 0.1425 32 1 1.5557 -2.4681 3.0906 33 1 -0.2250 -4.2212 1.7745 34 1 1.4271 -4.8580 1.5911 35 1 1.7198 -4.8096 4.0525 36 1 0.0678 -4.1729 4.2366 37 1 -0.5540 -8.6478 5.5400 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686919194.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:17 Heat of formation + Delta-G solvation = -56.327680 kcal Electronic energy + Delta-G solvation = -17595.260519 eV Core-core repulsion = 14792.170798 eV Total energy + Delta-G solvation = -2803.089721 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.37298 -39.18441 -36.65943 -35.39179 -34.80093 -32.78203 -31.53414 -28.87011 -27.03352 -25.02751 -24.55847 -22.70071 -21.89163 -20.66087 -19.02425 -18.53337 -17.41884 -16.86265 -16.48208 -16.27111 -15.81362 -15.65468 -15.58699 -15.35198 -14.85922 -14.62505 -14.54212 -13.91169 -13.36300 -13.25883 -13.01770 -12.95978 -12.57535 -12.20568 -12.18002 -12.08883 -11.87202 -11.76267 -11.52179 -10.79170 -10.76943 -10.08078 -9.62631 -9.33987 -8.30339 -6.37880 1.39344 1.41869 1.52915 1.53229 2.07043 2.36783 2.87122 3.04860 3.21511 3.72670 3.82593 3.98140 4.04596 4.27764 4.36489 4.37201 4.40966 4.46241 4.54113 4.62889 4.73575 4.76702 4.92617 4.95377 5.01875 5.13322 5.39164 5.40869 5.62970 5.72987 5.86217 6.01287 6.21546 6.40371 6.58897 6.70780 7.24527 7.27187 8.86547 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.040847 B = 0.004710 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.315210 B = 5943.670510 C = 6243.925619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.543 5.543 3 C 0.055 3.945 4 C 0.055 3.945 5 N -0.685 5.685 6 C 0.074 3.926 7 C 0.079 3.921 8 H 0.082 0.918 9 C 0.511 3.489 10 O -0.569 6.569 11 N -0.714 5.714 12 C 0.146 3.854 13 C -0.012 4.012 14 C -0.540 4.540 15 H 0.028 0.972 16 C 0.005 3.995 17 N -0.951 5.951 18 Si 0.959 3.041 19 H -0.265 1.265 20 H -0.286 1.286 21 H -0.236 1.236 22 H 0.034 0.966 23 H 0.088 0.912 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.033 0.967 29 H 0.361 0.639 30 H 0.098 0.902 31 H 0.029 0.971 32 H 0.413 0.587 33 H 0.042 0.958 34 H 0.044 0.956 35 H 0.038 0.962 36 H 0.035 0.965 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.097 23.651 -4.049 25.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.269 5.269 3 C -0.072 4.072 4 C -0.074 4.074 5 N -0.319 5.319 6 C -0.057 4.057 7 C -0.033 4.033 8 H 0.100 0.900 9 C 0.297 3.703 10 O -0.447 6.447 11 N -0.367 5.367 12 C 0.023 3.977 13 C -0.050 4.050 14 C -0.579 4.579 15 H 0.046 0.954 16 C -0.192 4.192 17 N -0.591 5.591 18 Si 0.781 3.219 19 H -0.190 1.190 20 H -0.212 1.212 21 H -0.159 1.159 22 H 0.052 0.948 23 H 0.107 0.893 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.116 0.884 27 H 0.126 0.874 28 H 0.051 0.949 29 H 0.181 0.819 30 H 0.116 0.884 31 H 0.047 0.953 32 H 0.250 0.750 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.521 23.154 -4.709 25.118 hybrid contribution -0.019 -0.600 0.767 0.974 sum 8.502 22.554 -3.942 24.424 Atomic orbital electron populations 1.22410 0.86533 1.02355 1.01200 1.61878 1.08715 1.14816 1.41515 1.22344 0.95319 0.87381 1.02167 1.22120 0.94101 0.99603 0.91577 1.60485 1.14444 1.12215 1.44708 1.21782 0.90974 0.91255 1.01657 1.21599 0.96742 0.90143 0.94844 0.90005 1.20918 0.77738 0.88246 0.83437 1.90674 1.51004 1.71716 1.31341 1.46114 1.65041 1.15685 1.09811 1.21021 0.97128 0.81019 0.98579 1.19649 0.97840 0.94507 0.92985 1.21255 1.43353 0.99227 0.94040 0.95391 1.26078 0.94173 0.95028 1.03938 1.70077 1.47131 1.12270 1.29615 0.85542 0.80165 0.78733 0.77465 1.19025 1.21226 1.15869 0.94788 0.89346 0.93263 0.93432 0.88405 0.87369 0.94866 0.81890 0.88373 0.95253 0.75049 0.93933 0.93788 0.94327 0.94668 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.11 127.69 1.16 1.71 16 2 N -0.54 -13.19 4.52 -900.97 -4.08 -17.26 16 3 C 0.06 0.94 5.61 86.31 0.48 1.42 16 4 C 0.06 0.81 6.72 86.31 0.58 1.39 16 5 N -0.69 -10.79 6.90 -513.44 -3.54 -14.34 16 6 C 0.07 1.54 5.98 86.31 0.52 2.05 16 7 C 0.08 1.93 2.34 44.17 0.10 2.04 16 8 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 9 C 0.51 16.67 6.08 87.65 0.53 17.20 16 10 O -0.57 -23.80 15.27 -3.05 -0.05 -23.85 16 11 N -0.71 -22.63 5.56 -463.06 -2.57 -25.20 16 12 C 0.15 6.01 5.61 86.38 0.48 6.49 16 13 C -0.01 -0.53 4.16 29.85 0.12 -0.41 16 14 C -0.54 -30.92 9.66 25.60 0.25 -30.67 16 15 H 0.03 1.80 7.99 -2.91 -0.02 1.77 16 16 C 0.00 0.28 5.47 84.65 0.46 0.75 16 17 N -0.95 -59.38 13.96 21.45 0.30 -59.08 16 18 Si 0.96 42.13 27.47 68.60 1.88 44.02 16 19 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 20 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.24 -9.16 6.54 99.48 0.65 -8.51 16 22 H 0.03 0.73 8.12 -2.39 -0.02 0.71 16 23 H 0.09 1.71 8.03 -2.38 -0.02 1.70 16 24 H 0.05 1.52 6.34 -2.39 -0.02 1.50 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.10 1.35 8.07 -2.39 -0.02 1.33 16 27 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.36 4.18 8.90 -89.70 -0.80 3.38 16 30 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.41 10.24 8.47 -92.71 -0.79 9.46 16 33 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.04 1.60 7.20 -2.39 -0.02 1.59 16 36 H 0.04 1.45 7.57 -2.39 -0.02 1.43 16 37 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -72.63 299.29 -3.93 -76.57 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -0.58 Total: 17.18 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 4.70 Total: 1.97 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -9.89 Total: -115.89 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.05 Total: -23.85 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 1.88 Total: 44.02 kcal Total: -72.63 -3.93 -76.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686919194.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.241 kcal (2) G-P(sol) polarization free energy of solvation -72.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds