Wall clock time and date at job start Mon Mar 30 2020 03:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46673 * 2 1 4 4 C 1.50697 * 109.47019 * 119.99283 * 2 1 3 5 5 H 1.08007 * 119.99732 * 120.00403 * 4 2 1 6 6 C 1.37880 * 120.00405 * 300.00766 * 4 2 1 7 7 N 1.31515 * 119.99594 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99959 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47262 * 89.99829 * 8 6 4 10 10 H 1.48501 * 109.46638 * 209.99993 * 8 6 4 11 11 H 1.48496 * 109.46857 * 329.99389 * 8 6 4 12 12 N 1.46496 * 109.47519 * 240.00009 * 2 1 3 13 13 C 1.34774 * 120.00276 * 85.26979 * 12 2 1 14 14 O 1.21281 * 120.00092 * 359.73054 * 13 12 2 15 15 C 1.50701 * 120.00072 * 179.72286 * 13 12 2 16 16 H 1.09003 * 109.48741 * 31.92774 * 15 13 12 17 17 C 1.53054 * 109.49227 * 271.88199 * 15 13 12 18 18 N 1.46952 * 109.36454 * 181.63327 * 17 15 13 19 19 C 1.46951 * 110.88045 * 59.32032 * 18 17 15 20 20 C 1.53048 * 109.36584 * 300.67471 * 19 18 17 21 21 N 1.46949 * 109.48810 * 151.96558 * 15 13 12 22 22 C 1.46904 * 111.00372 * 303.16048 * 21 15 13 23 23 H 1.09000 * 109.46673 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47542 * 299.99751 * 1 2 3 25 25 H 1.08997 * 109.47085 * 60.00608 * 1 2 3 26 26 H 0.96999 * 119.99598 * 180.02562 * 7 6 4 27 27 H 0.97001 * 119.99841 * 264.99515 * 12 2 1 28 28 H 1.09002 * 109.48421 * 301.59761 * 17 15 13 29 29 H 1.08997 * 109.48575 * 61.63958 * 17 15 13 30 30 H 1.00906 * 110.99662 * 295.45152 * 18 17 15 31 31 H 1.08989 * 109.49371 * 60.64997 * 19 18 17 32 32 H 1.09011 * 109.48578 * 180.71352 * 19 18 17 33 33 H 1.09001 * 109.49415 * 178.36742 * 20 19 18 34 34 H 1.09005 * 109.49279 * 298.41653 * 20 19 18 35 35 H 1.08992 * 109.47052 * 66.02608 * 22 21 15 36 36 H 1.09002 * 109.46969 * 186.02887 * 22 21 15 37 37 H 1.09000 * 109.46835 * 306.02607 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9433 0.8303 2.6033 8 14 2.3224 -1.1193 4.0081 9 1 3.6303 -0.5437 4.4120 10 1 1.3442 -0.9487 5.1123 11 1 2.4879 -2.5650 3.7124 12 7 2.0184 -0.6906 -1.1961 13 6 2.1524 -0.0170 -2.3557 14 8 1.8639 1.1598 -2.4103 15 6 2.6607 -0.7259 -3.5846 16 1 2.3434 -1.7684 -3.5603 17 6 4.1894 -0.6580 -3.6177 18 7 4.6801 -1.3159 -4.8366 19 6 4.1374 -0.6656 -6.0375 20 6 2.6088 -0.7335 -6.0045 21 7 2.1176 -0.0760 -4.7854 22 6 0.6490 -0.0542 -4.7537 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 0.7092 1.1619 3.4843 27 1 2.2492 -1.6317 -1.1525 28 1 4.5072 0.3847 -3.6140 29 1 4.5949 -1.1648 -2.7420 30 1 4.4616 -2.3010 -4.8288 31 1 4.4546 0.3769 -6.0614 32 1 4.5051 -1.1784 -6.9264 33 1 2.2031 -0.2263 -6.8799 34 1 2.2909 -1.7762 -6.0085 35 1 0.3127 0.5854 -3.9378 36 1 0.2709 0.3342 -5.6994 37 1 0.2739 -1.0661 -4.6005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686920787.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:21 Heat of formation + Delta-G solvation = -27.233797 kcal Electronic energy + Delta-G solvation = -18137.625274 eV Core-core repulsion = 15335.797159 eV Total energy + Delta-G solvation = -2801.828115 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.99401 -37.84597 -34.85852 -34.15084 -32.44380 -31.24231 -28.84355 -27.35733 -25.28024 -24.17649 -23.48712 -21.54533 -20.26476 -19.38196 -17.28902 -16.17105 -15.95636 -15.40006 -15.26045 -14.86384 -14.77232 -14.11863 -13.63240 -13.48623 -13.13022 -12.62307 -12.39026 -12.07955 -12.02509 -11.58717 -11.50293 -11.32976 -11.10717 -11.00772 -10.94058 -10.74847 -10.31401 -10.24888 -9.21254 -9.06666 -8.58045 -8.44902 -8.26189 -7.90722 -6.13211 -4.22637 3.24093 3.29784 3.30823 3.32417 3.68092 4.01389 4.28617 4.43096 4.89527 5.00430 5.08379 5.10926 5.17631 5.20006 5.45159 5.52081 5.58011 5.60108 5.63018 5.91276 6.10010 6.17176 6.75357 6.79199 6.92352 6.93743 7.03090 7.13685 7.22797 7.44325 7.55791 7.68596 7.90422 8.13617 8.65439 8.77946 9.12586 9.45146 10.92779 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.039375 B = 0.005780 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.943426 B = 4842.942846 C = 5310.922064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.049 0.951 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.709 5.709 13 C 0.508 3.492 14 O -0.534 6.534 15 C 0.031 3.969 16 H 0.052 0.948 17 C 0.071 3.929 18 N -0.681 5.681 19 C 0.057 3.943 20 C 0.017 3.983 21 N -0.515 5.515 22 C 0.021 3.979 23 H 0.025 0.975 24 H 0.090 0.910 25 H 0.013 0.987 26 H 0.264 0.736 27 H 0.386 0.614 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.337 0.663 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.030 0.970 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.024 -6.272 -14.066 15.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.164 3.836 3 H 0.067 0.933 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.358 5.358 13 C 0.291 3.709 14 O -0.411 6.411 15 C -0.083 4.083 16 H 0.069 0.931 17 C -0.059 4.059 18 N -0.309 5.309 19 C -0.073 4.073 20 C -0.113 4.113 21 N -0.240 5.240 22 C -0.127 4.127 23 H 0.044 0.956 24 H 0.109 0.891 25 H 0.032 0.968 26 H 0.074 0.926 27 H 0.218 0.782 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.154 0.846 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.048 0.952 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 3.492 -4.438 -13.949 15.049 hybrid contribution -1.011 -2.129 0.908 2.526 sum 2.481 -6.567 -13.041 14.810 Atomic orbital electron populations 1.22068 0.98537 0.98992 1.00849 1.18733 0.90940 0.94016 0.79947 0.93339 1.21211 1.32454 1.13236 0.90323 0.92104 1.24892 0.94780 0.94961 0.99070 1.69904 1.35830 1.22444 1.23898 0.86442 0.78639 0.79806 0.82175 1.20506 1.21081 1.19877 1.46573 1.65121 1.13388 1.10681 1.20015 0.79050 0.87655 0.84186 1.90658 1.50101 1.15692 1.84638 1.22492 0.98682 0.96108 0.91061 0.93062 1.22055 0.89025 1.01930 0.92900 1.60784 1.61182 1.06844 1.02075 1.22146 0.90958 1.01282 0.92898 1.22921 0.97982 0.96815 0.93560 1.61825 1.08933 1.53000 1.00280 1.22488 0.86494 1.00114 1.03582 0.95587 0.89123 0.96778 0.92561 0.78152 0.89145 0.89420 0.84583 0.89721 0.90224 0.89960 0.95212 0.89576 0.91520 0.96149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.26 37.16 0.34 -3.29 16 2 C 0.27 6.75 2.56 -69.09 -0.18 6.57 16 3 H 0.05 1.43 7.57 -51.93 -0.39 1.04 16 4 C -0.53 -14.09 8.73 -34.44 -0.30 -14.39 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.89 11.32 55.43 0.63 -24.27 16 8 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 12 N -0.71 -14.70 5.07 -54.94 -0.28 -14.98 16 13 C 0.51 10.19 6.03 -10.99 -0.07 10.12 16 14 O -0.53 -12.92 14.95 5.56 0.08 -12.84 16 15 C 0.03 0.47 2.33 -68.81 -0.16 0.31 16 16 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 17 C 0.07 0.99 5.99 -3.77 -0.02 0.96 16 18 N -0.68 -7.73 6.91 -113.64 -0.79 -8.51 16 19 C 0.06 0.59 6.72 -3.77 -0.03 0.57 16 20 C 0.02 0.19 5.60 -3.77 -0.02 0.17 16 21 N -0.52 -7.65 4.52 -236.12 -1.07 -8.72 16 22 C 0.02 0.31 9.11 60.07 0.55 0.86 16 23 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.39 6.96 8.54 -40.82 -0.35 6.61 16 28 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.34 3.26 8.89 -39.29 -0.35 2.91 16 31 H 0.08 0.98 8.14 -51.94 -0.42 0.55 16 32 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.09 1.55 6.34 -51.93 -0.33 1.22 16 36 H 0.07 0.83 8.03 -51.93 -0.42 0.41 16 37 H 0.02 0.28 8.12 -51.93 -0.42 -0.15 16 LS Contribution 298.09 15.07 4.49 4.49 Total: -1.00 -30.41 298.09 -7.84 -38.26 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.92 Total: 7.45 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 0.02 Total: 3.55 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -1.50 Total: -56.47 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.08 Total: -12.84 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.41 -7.84 -38.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686920787.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.021 kcal (2) G-P(sol) polarization free energy of solvation -30.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds