Wall clock time and date at job start Mon Mar 30 2020 03:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46673 * 2 1 4 4 C 1.50697 * 109.47019 * 119.99283 * 2 1 3 5 5 H 1.08007 * 119.99732 * 120.00403 * 4 2 1 6 6 C 1.37880 * 120.00405 * 300.00766 * 4 2 1 7 7 N 1.31515 * 119.99594 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99959 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47262 * 89.99829 * 8 6 4 10 10 H 1.48501 * 109.46638 * 209.99993 * 8 6 4 11 11 H 1.48496 * 109.46857 * 329.99389 * 8 6 4 12 12 N 1.46496 * 109.47519 * 240.00009 * 2 1 3 13 13 C 1.34774 * 120.00276 * 85.26979 * 12 2 1 14 14 O 1.21281 * 120.00092 * 359.73054 * 13 12 2 15 15 C 1.50701 * 120.00072 * 179.72286 * 13 12 2 16 16 H 1.09003 * 109.48741 * 31.92774 * 15 13 12 17 17 C 1.53054 * 109.49227 * 271.88199 * 15 13 12 18 18 N 1.46952 * 109.36454 * 181.63327 * 17 15 13 19 19 C 1.46951 * 110.88045 * 59.32032 * 18 17 15 20 20 C 1.53048 * 109.36584 * 300.67471 * 19 18 17 21 21 N 1.46949 * 109.48810 * 151.96558 * 15 13 12 22 22 C 1.46904 * 111.00372 * 303.16048 * 21 15 13 23 23 H 1.09000 * 109.46673 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47542 * 299.99751 * 1 2 3 25 25 H 1.08997 * 109.47085 * 60.00608 * 1 2 3 26 26 H 0.96999 * 119.99598 * 180.02562 * 7 6 4 27 27 H 0.97001 * 119.99841 * 264.99515 * 12 2 1 28 28 H 1.09002 * 109.48421 * 301.59761 * 17 15 13 29 29 H 1.08997 * 109.48575 * 61.63958 * 17 15 13 30 30 H 1.00906 * 110.99662 * 295.45152 * 18 17 15 31 31 H 1.08989 * 109.49371 * 60.64997 * 19 18 17 32 32 H 1.09011 * 109.48578 * 180.71352 * 19 18 17 33 33 H 1.09001 * 109.49415 * 178.36742 * 20 19 18 34 34 H 1.09005 * 109.49279 * 298.41653 * 20 19 18 35 35 H 1.08992 * 109.47052 * 66.02608 * 22 21 15 36 36 H 1.09002 * 109.46969 * 186.02887 * 22 21 15 37 37 H 1.09000 * 109.46835 * 306.02607 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9433 0.8303 2.6033 8 14 2.3224 -1.1193 4.0081 9 1 3.6303 -0.5437 4.4120 10 1 1.3442 -0.9487 5.1123 11 1 2.4879 -2.5650 3.7124 12 7 2.0184 -0.6906 -1.1961 13 6 2.1524 -0.0170 -2.3557 14 8 1.8639 1.1598 -2.4103 15 6 2.6607 -0.7259 -3.5846 16 1 2.3434 -1.7684 -3.5603 17 6 4.1894 -0.6580 -3.6177 18 7 4.6801 -1.3159 -4.8366 19 6 4.1374 -0.6656 -6.0375 20 6 2.6088 -0.7335 -6.0045 21 7 2.1176 -0.0760 -4.7854 22 6 0.6490 -0.0542 -4.7537 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 0.7092 1.1619 3.4843 27 1 2.2492 -1.6317 -1.1525 28 1 4.5072 0.3847 -3.6140 29 1 4.5949 -1.1648 -2.7420 30 1 4.4616 -2.3010 -4.8288 31 1 4.4546 0.3769 -6.0614 32 1 4.5051 -1.1784 -6.9264 33 1 2.2031 -0.2263 -6.8799 34 1 2.2909 -1.7762 -6.0085 35 1 0.3127 0.5854 -3.9378 36 1 0.2709 0.3342 -5.6994 37 1 0.2739 -1.0661 -4.6005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686920787.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:21 Heat of formation + Delta-G solvation = -52.710010 kcal Electronic energy + Delta-G solvation = -18138.730006 eV Core-core repulsion = 15335.797159 eV Total energy + Delta-G solvation = -2802.932847 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.34668 -39.25635 -36.70782 -35.27042 -34.34620 -32.51543 -30.60480 -28.49002 -27.36117 -25.42423 -24.55519 -23.07700 -21.63407 -21.04356 -18.99081 -17.65840 -17.39442 -16.96723 -16.52202 -16.25484 -15.83840 -15.67201 -15.15538 -14.92627 -14.44546 -14.27491 -13.81450 -13.73558 -13.14792 -13.06368 -12.96733 -12.83271 -12.73868 -12.60317 -12.27922 -12.21689 -12.12772 -12.04062 -11.13189 -10.76902 -10.58668 -9.78444 -9.59185 -9.27350 -8.18091 -6.35926 1.45240 1.45920 1.56505 1.73594 2.26674 2.47906 2.84431 3.12449 3.31227 3.81738 3.89189 3.96296 4.06621 4.19652 4.35072 4.40892 4.52357 4.61730 4.72086 4.76374 4.86759 4.94577 4.97046 5.07142 5.12830 5.40757 5.59548 5.64925 5.73884 5.84189 5.91972 6.03843 6.08286 6.43516 6.71722 6.95723 7.31728 7.54211 8.88305 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.039375 B = 0.005780 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.943426 B = 4842.942846 C = 5310.922064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.272 3.728 3 H -0.004 1.004 4 C -0.546 4.546 5 H 0.075 0.925 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.259 1.259 12 N -0.704 5.704 13 C 0.506 3.494 14 O -0.582 6.582 15 C 0.045 3.955 16 H 0.076 0.924 17 C 0.079 3.921 18 N -0.676 5.676 19 C 0.058 3.942 20 C 0.020 3.980 21 N -0.540 5.540 22 C 0.026 3.974 23 H 0.040 0.960 24 H 0.066 0.934 25 H 0.009 0.991 26 H 0.265 0.735 27 H 0.403 0.597 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.352 0.648 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.043 0.957 36 H 0.088 0.912 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.985 -8.885 -15.242 18.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.169 3.831 3 H 0.014 0.986 4 C -0.584 4.584 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.183 1.183 12 N -0.353 5.353 13 C 0.291 3.709 14 O -0.461 6.461 15 C -0.069 4.069 16 H 0.094 0.906 17 C -0.052 4.052 18 N -0.305 5.305 19 C -0.072 4.072 20 C -0.109 4.109 21 N -0.266 5.266 22 C -0.122 4.122 23 H 0.059 0.941 24 H 0.085 0.915 25 H 0.028 0.972 26 H 0.074 0.926 27 H 0.238 0.762 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.171 0.829 31 H 0.087 0.913 32 H 0.130 0.870 33 H 0.115 0.885 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.107 0.893 37 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 4.472 -7.105 -15.165 17.334 hybrid contribution -1.310 -1.261 1.191 2.174 sum 3.161 -8.366 -13.974 16.591 Atomic orbital electron populations 1.21876 0.98378 0.99343 0.99428 1.18319 0.91022 0.91856 0.81940 0.98578 1.21540 1.32579 1.13595 0.90708 0.90735 1.25822 0.94828 0.95583 1.02399 1.70059 1.37011 1.23985 1.24626 0.85321 0.77752 0.79206 0.77916 1.20347 1.21016 1.18269 1.46313 1.65155 1.14048 1.09832 1.20903 0.77635 0.87206 0.85160 1.90634 1.51920 1.18103 1.85464 1.22388 0.99409 0.96316 0.88822 0.90646 1.21915 0.87806 1.00855 0.94641 1.60757 1.60813 1.07674 1.01254 1.22229 0.90540 1.00877 0.93527 1.23021 0.98257 0.97594 0.92033 1.61787 1.08958 1.54456 1.01358 1.22382 0.86791 0.99923 1.03111 0.94120 0.91515 0.97171 0.92554 0.76205 0.91842 0.88781 0.82912 0.91313 0.86960 0.88455 0.93501 0.93767 0.89323 0.95028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.74 9.26 71.98 0.67 -6.07 16 2 C 0.27 14.24 2.56 44.25 0.11 14.35 16 3 H 0.00 -0.23 7.57 -2.39 -0.02 -0.25 16 4 C -0.55 -28.85 8.73 25.60 0.22 -28.63 16 5 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -52.99 11.32 21.45 0.24 -52.75 16 8 Si 0.97 41.86 29.54 68.60 2.03 43.89 16 9 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 12 N -0.70 -29.32 5.07 -446.11 -2.26 -31.58 16 13 C 0.51 20.56 6.03 87.66 0.53 21.09 16 14 O -0.58 -29.46 14.95 -3.03 -0.05 -29.51 16 15 C 0.04 1.30 2.33 44.18 0.10 1.40 16 16 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 17 C 0.08 2.08 5.99 86.31 0.52 2.59 16 18 N -0.68 -13.35 6.91 -513.46 -3.55 -16.90 16 19 C 0.06 1.01 6.72 86.31 0.58 1.59 16 20 C 0.02 0.37 5.60 86.31 0.48 0.85 16 21 N -0.54 -15.22 4.52 -900.95 -4.08 -19.30 16 22 C 0.03 0.74 9.11 127.69 1.16 1.90 16 23 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.07 3.75 6.07 -2.39 -0.01 3.73 16 25 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 27 H 0.40 14.01 8.54 -92.71 -0.79 13.22 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.35 5.40 8.89 -89.69 -0.80 4.60 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.10 1.58 8.07 -2.39 -0.02 1.56 16 34 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.04 1.62 6.34 -2.39 -0.02 1.61 16 36 H 0.09 2.06 8.03 -2.39 -0.02 2.04 16 37 H 0.03 0.80 8.12 -2.39 -0.02 0.78 16 Total: -1.00 -68.21 298.09 -3.36 -71.56 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: -0.52 Total: 24.32 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 4.83 Total: 10.26 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -9.64 Total: -120.52 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.05 Total: -29.51 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -68.21 -3.36 -71.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686920787.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.854 kcal (2) G-P(sol) polarization free energy of solvation -68.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds