Wall clock time and date at job start Mon Mar 30 2020 03:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47763 * 2 1 4 4 C 1.50701 * 109.47291 * 239.99595 * 2 1 3 5 5 H 1.08004 * 119.99975 * 239.99860 * 4 2 1 6 6 C 1.37872 * 119.99910 * 60.00332 * 4 2 1 7 7 N 1.31517 * 120.00235 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00081 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47142 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.46907 * 300.00315 * 8 6 4 11 11 H 1.48500 * 109.46686 * 59.99868 * 8 6 4 12 12 N 1.46500 * 109.46999 * 119.99783 * 2 1 3 13 13 C 1.34776 * 119.99979 * 275.00299 * 12 2 1 14 14 O 1.21282 * 119.99881 * 359.97438 * 13 12 2 15 15 C 1.50702 * 119.99931 * 180.02562 * 13 12 2 16 16 H 1.08994 * 109.48816 * 327.77230 * 15 13 12 17 17 C 1.53043 * 109.49070 * 87.82352 * 15 13 12 18 18 N 1.46960 * 109.36500 * 178.36971 * 17 15 13 19 19 C 1.46961 * 110.87594 * 300.67609 * 18 17 15 20 20 C 1.53052 * 109.36569 * 59.32300 * 19 18 17 21 21 N 1.46959 * 109.48480 * 207.73668 * 15 13 12 22 22 C 1.46894 * 111.00410 * 56.84295 * 21 15 13 23 23 H 1.08994 * 109.47114 * 300.00617 * 1 2 3 24 24 H 1.09006 * 109.46881 * 60.00506 * 1 2 3 25 25 H 1.09001 * 109.47282 * 179.97438 * 1 2 3 26 26 H 0.97001 * 119.99973 * 180.02562 * 7 6 4 27 27 H 0.97000 * 120.00316 * 94.99855 * 12 2 1 28 28 H 1.09003 * 109.49074 * 298.33334 * 17 15 13 29 29 H 1.09004 * 109.49367 * 58.40065 * 17 15 13 30 30 H 1.00899 * 111.00501 * 64.54454 * 18 17 15 31 31 H 1.09004 * 109.48562 * 179.28534 * 19 18 17 32 32 H 1.08994 * 109.49213 * 299.32971 * 19 18 17 33 33 H 1.08995 * 109.48680 * 61.56198 * 20 19 18 34 34 H 1.09001 * 109.48671 * 181.60678 * 20 19 18 35 35 H 1.08998 * 109.47343 * 53.82372 * 22 21 15 36 36 H 1.09004 * 109.47318 * 173.82289 * 22 21 15 37 37 H 1.09002 * 109.47165 * 293.82364 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6035 8 14 2.3227 -1.1198 -4.0079 9 1 1.8271 -0.4202 -5.2204 10 1 3.8077 -1.1192 -4.0075 11 1 1.8282 -2.5200 -4.0080 12 7 2.0183 -0.6906 1.1962 13 6 2.1469 -0.0182 2.3572 14 8 1.8589 1.1587 2.4114 15 6 2.6498 -0.7284 3.5875 16 1 2.3282 -1.7696 3.5633 17 6 4.1786 -0.6668 3.6237 18 7 4.6640 -1.3260 4.8442 19 6 4.1215 -0.6726 6.0435 20 6 2.5926 -0.7342 6.0074 21 7 2.1068 -0.0754 4.7868 22 6 0.6385 -0.0475 4.7521 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 0.7091 1.1612 -3.4845 27 1 2.2490 -1.6317 1.1527 28 1 4.5839 -1.1763 2.7495 29 1 4.5008 0.3745 3.6201 30 1 4.4416 -2.3101 4.8366 31 1 4.4851 -1.1864 6.9335 32 1 4.4433 0.3685 6.0676 33 1 2.2705 -1.7755 6.0110 34 1 2.1874 -0.2251 6.8818 35 1 0.2595 -1.0575 4.5961 36 1 0.2599 0.3406 5.6977 37 1 0.3065 0.5950 3.9366 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686920788.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:23 Heat of formation + Delta-G solvation = -27.151086 kcal Electronic energy + Delta-G solvation = -18137.896071 eV Core-core repulsion = 15336.071542 eV Total energy + Delta-G solvation = -2801.824529 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.99373 -37.84524 -34.85835 -34.14905 -32.44309 -31.24226 -28.84194 -27.35584 -25.27901 -24.17583 -23.48617 -21.54515 -20.26521 -19.38073 -17.28830 -16.16989 -15.95416 -15.39618 -15.25942 -14.86449 -14.77175 -14.12013 -13.63492 -13.48761 -13.12968 -12.62120 -12.38853 -12.07709 -12.02393 -11.58407 -11.50127 -11.32984 -11.11937 -10.99879 -10.93012 -10.74409 -10.33389 -10.24484 -9.21149 -9.06889 -8.57938 -8.44886 -8.26155 -7.90568 -6.12859 -4.22470 3.25062 3.29913 3.30635 3.31671 3.68083 4.01386 4.28690 4.43198 4.89554 5.00507 5.08376 5.10954 5.17695 5.20136 5.45206 5.52094 5.58091 5.60162 5.63033 5.91301 6.09988 6.17371 6.75312 6.79244 6.92422 6.93712 7.03167 7.13619 7.22822 7.44429 7.55743 7.68640 7.90440 8.13700 8.65434 8.77941 9.12613 9.45276 10.93049 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.039416 B = 0.005779 C = 0.005270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.208764 B = 4844.143023 C = 5312.286086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.266 3.734 3 H 0.049 0.951 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.277 1.277 12 N -0.709 5.709 13 C 0.508 3.492 14 O -0.534 6.534 15 C 0.031 3.969 16 H 0.052 0.948 17 C 0.071 3.929 18 N -0.681 5.681 19 C 0.057 3.943 20 C 0.017 3.983 21 N -0.515 5.515 22 C 0.021 3.979 23 H 0.013 0.987 24 H 0.090 0.910 25 H 0.025 0.975 26 H 0.265 0.735 27 H 0.386 0.614 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.337 0.663 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.030 0.970 34 H 0.082 0.918 35 H 0.020 0.980 36 H 0.066 0.934 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.984 -6.264 14.061 15.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.202 1.202 12 N -0.358 5.358 13 C 0.291 3.709 14 O -0.411 6.411 15 C -0.083 4.083 16 H 0.069 0.931 17 C -0.059 4.059 18 N -0.309 5.309 19 C -0.073 4.073 20 C -0.113 4.113 21 N -0.240 5.240 22 C -0.127 4.127 23 H 0.032 0.968 24 H 0.109 0.891 25 H 0.044 0.956 26 H 0.075 0.925 27 H 0.218 0.782 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.154 0.846 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.048 0.952 34 H 0.100 0.900 35 H 0.038 0.962 36 H 0.085 0.915 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.460 -4.426 13.941 15.031 hybrid contribution -1.020 -2.140 -0.904 2.538 sum 2.440 -6.566 13.037 14.800 Atomic orbital electron populations 1.22072 0.98549 0.98989 1.00854 1.18730 0.90922 0.94012 0.79929 0.93338 1.21172 1.32545 1.13240 0.90334 0.92152 1.24888 0.94793 0.94938 0.99053 1.69892 1.35802 1.22387 1.24004 0.86503 0.79210 0.79541 0.81809 1.21114 1.20125 1.20208 1.46573 1.65169 1.13434 1.10590 1.20015 0.79033 0.87666 0.84192 1.90657 1.50034 1.15678 1.84717 1.22490 0.98691 0.96087 0.91074 0.93055 1.22057 0.89067 1.01912 0.92873 1.60788 1.61249 1.06772 1.02081 1.22149 0.90968 1.01253 0.92920 1.22919 0.98001 0.96816 0.93541 1.61824 1.09089 1.52842 1.00279 1.22489 0.86477 1.00138 1.03580 0.96777 0.89121 0.95590 0.92501 0.78156 0.89421 0.89143 0.84584 0.90228 0.89721 0.95216 0.89958 0.96154 0.91526 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.29 16 2 C 0.27 6.76 2.56 -69.08 -0.18 6.58 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 4 C -0.53 -14.11 8.73 -34.44 -0.30 -14.41 16 5 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.90 11.32 55.43 0.63 -24.27 16 8 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 9 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.71 -14.70 5.07 -54.93 -0.28 -14.98 16 13 C 0.51 10.19 6.04 -10.98 -0.07 10.12 16 14 O -0.53 -12.92 14.94 5.56 0.08 -12.84 16 15 C 0.03 0.47 2.33 -68.81 -0.16 0.31 16 16 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 17 C 0.07 0.99 5.99 -3.77 -0.02 0.96 16 18 N -0.68 -7.73 6.91 -113.63 -0.79 -8.51 16 19 C 0.06 0.59 6.72 -3.76 -0.03 0.56 16 20 C 0.02 0.19 5.60 -3.76 -0.02 0.17 16 21 N -0.52 -7.65 4.52 -236.13 -1.07 -8.72 16 22 C 0.02 0.31 9.11 60.06 0.55 0.86 16 23 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 24 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 25 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.39 6.95 8.54 -40.82 -0.35 6.60 16 28 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 30 H 0.34 3.26 8.89 -39.29 -0.35 2.91 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.81 8.07 -51.93 -0.42 0.40 16 35 H 0.02 0.28 8.12 -51.93 -0.42 -0.15 16 36 H 0.07 0.83 8.03 -51.93 -0.42 0.41 16 37 H 0.09 1.55 6.34 -51.93 -0.33 1.22 16 LS Contribution 298.07 15.07 4.49 4.49 Total: -1.00 -30.39 298.07 -7.84 -38.23 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -5.92 Total: 7.49 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 0.02 Total: 3.55 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -1.50 Total: -56.48 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.08 Total: -12.84 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.39 -7.84 -38.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686920788.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.081 kcal (2) G-P(sol) polarization free energy of solvation -30.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds