Wall clock time and date at job start Mon Mar 30 2020 03:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47763 * 2 1 4 4 C 1.50701 * 109.47291 * 239.99595 * 2 1 3 5 5 H 1.08004 * 119.99975 * 239.99860 * 4 2 1 6 6 C 1.37872 * 119.99910 * 60.00332 * 4 2 1 7 7 N 1.31517 * 120.00235 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00081 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47142 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.46907 * 300.00315 * 8 6 4 11 11 H 1.48500 * 109.46686 * 59.99868 * 8 6 4 12 12 N 1.46500 * 109.46999 * 119.99783 * 2 1 3 13 13 C 1.34776 * 119.99979 * 275.00299 * 12 2 1 14 14 O 1.21282 * 119.99881 * 359.97438 * 13 12 2 15 15 C 1.50702 * 119.99931 * 180.02562 * 13 12 2 16 16 H 1.08994 * 109.48816 * 327.77230 * 15 13 12 17 17 C 1.53043 * 109.49070 * 87.82352 * 15 13 12 18 18 N 1.46960 * 109.36500 * 178.36971 * 17 15 13 19 19 C 1.46961 * 110.87594 * 300.67609 * 18 17 15 20 20 C 1.53052 * 109.36569 * 59.32300 * 19 18 17 21 21 N 1.46959 * 109.48480 * 207.73668 * 15 13 12 22 22 C 1.46894 * 111.00410 * 56.84295 * 21 15 13 23 23 H 1.08994 * 109.47114 * 300.00617 * 1 2 3 24 24 H 1.09006 * 109.46881 * 60.00506 * 1 2 3 25 25 H 1.09001 * 109.47282 * 179.97438 * 1 2 3 26 26 H 0.97001 * 119.99973 * 180.02562 * 7 6 4 27 27 H 0.97000 * 120.00316 * 94.99855 * 12 2 1 28 28 H 1.09003 * 109.49074 * 298.33334 * 17 15 13 29 29 H 1.09004 * 109.49367 * 58.40065 * 17 15 13 30 30 H 1.00899 * 111.00501 * 64.54454 * 18 17 15 31 31 H 1.09004 * 109.48562 * 179.28534 * 19 18 17 32 32 H 1.08994 * 109.49213 * 299.32971 * 19 18 17 33 33 H 1.08995 * 109.48680 * 61.56198 * 20 19 18 34 34 H 1.09001 * 109.48671 * 181.60678 * 20 19 18 35 35 H 1.08998 * 109.47343 * 53.82372 * 22 21 15 36 36 H 1.09004 * 109.47318 * 173.82289 * 22 21 15 37 37 H 1.09002 * 109.47165 * 293.82364 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6035 8 14 2.3227 -1.1198 -4.0079 9 1 1.8271 -0.4202 -5.2204 10 1 3.8077 -1.1192 -4.0075 11 1 1.8282 -2.5200 -4.0080 12 7 2.0183 -0.6906 1.1962 13 6 2.1469 -0.0182 2.3572 14 8 1.8589 1.1587 2.4114 15 6 2.6498 -0.7284 3.5875 16 1 2.3282 -1.7696 3.5633 17 6 4.1786 -0.6668 3.6237 18 7 4.6640 -1.3260 4.8442 19 6 4.1215 -0.6726 6.0435 20 6 2.5926 -0.7342 6.0074 21 7 2.1068 -0.0754 4.7868 22 6 0.6385 -0.0475 4.7521 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 0.7091 1.1612 -3.4845 27 1 2.2490 -1.6317 1.1527 28 1 4.5839 -1.1763 2.7495 29 1 4.5008 0.3745 3.6201 30 1 4.4416 -2.3101 4.8366 31 1 4.4851 -1.1864 6.9335 32 1 4.4433 0.3685 6.0676 33 1 2.2705 -1.7755 6.0110 34 1 2.1874 -0.2251 6.8818 35 1 0.2595 -1.0575 4.5961 36 1 0.2599 0.3406 5.6977 37 1 0.3065 0.5950 3.9366 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686920788.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:22 Heat of formation + Delta-G solvation = -52.606124 kcal Electronic energy + Delta-G solvation = -18138.999884 eV Core-core repulsion = 15336.071542 eV Total energy + Delta-G solvation = -2802.928342 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.34666 -39.25578 -36.70700 -35.26974 -34.34503 -32.51594 -30.60305 -28.48946 -27.35950 -25.42360 -24.55471 -23.07687 -21.63422 -21.04310 -18.98927 -17.65487 -17.39289 -16.96559 -16.52090 -16.25744 -15.83870 -15.67336 -15.15651 -14.92678 -14.44215 -14.27506 -13.81273 -13.73301 -13.14536 -13.06247 -12.98018 -12.80880 -12.72613 -12.60505 -12.28085 -12.21702 -12.15375 -12.04032 -11.13659 -10.76717 -10.58059 -9.78379 -9.59122 -9.27365 -8.17732 -6.35769 1.45266 1.47487 1.55303 1.73623 2.26729 2.48078 2.84406 3.12597 3.31218 3.81763 3.89220 3.96294 4.06587 4.19670 4.35051 4.40892 4.52337 4.61737 4.72063 4.76370 4.86700 4.94530 4.97132 5.07076 5.12838 5.40767 5.59452 5.64935 5.73853 5.84184 5.92064 6.03858 6.08283 6.43524 6.71581 6.95798 7.31853 7.54275 8.88396 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.039416 B = 0.005779 C = 0.005270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.208764 B = 4844.143023 C = 5312.286086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.273 3.727 3 H -0.004 1.004 4 C -0.547 4.547 5 H 0.074 0.926 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.287 1.287 10 H -0.270 1.270 11 H -0.264 1.264 12 N -0.704 5.704 13 C 0.506 3.494 14 O -0.582 6.582 15 C 0.045 3.955 16 H 0.076 0.924 17 C 0.079 3.921 18 N -0.676 5.676 19 C 0.058 3.942 20 C 0.020 3.980 21 N -0.539 5.539 22 C 0.026 3.974 23 H 0.009 0.991 24 H 0.066 0.934 25 H 0.040 0.960 26 H 0.265 0.735 27 H 0.403 0.597 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.352 0.648 31 H 0.112 0.888 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.097 0.903 35 H 0.031 0.969 36 H 0.088 0.912 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.937 -8.873 15.230 18.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.169 3.831 3 H 0.014 0.986 4 C -0.585 4.585 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.212 1.212 10 H -0.195 1.195 11 H -0.188 1.188 12 N -0.354 5.354 13 C 0.291 3.709 14 O -0.461 6.461 15 C -0.069 4.069 16 H 0.094 0.906 17 C -0.052 4.052 18 N -0.305 5.305 19 C -0.072 4.072 20 C -0.109 4.109 21 N -0.266 5.266 22 C -0.122 4.122 23 H 0.028 0.972 24 H 0.085 0.915 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.238 0.762 28 H 0.112 0.888 29 H 0.082 0.918 30 H 0.171 0.829 31 H 0.130 0.870 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.115 0.885 35 H 0.050 0.950 36 H 0.107 0.893 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.431 -7.088 15.150 17.303 hybrid contribution -1.316 -1.276 -1.184 2.183 sum 3.115 -8.364 13.966 16.574 Atomic orbital electron populations 1.21880 0.98389 0.99329 0.99437 1.18316 0.91004 0.91854 0.81926 0.98578 1.21509 1.32684 1.13617 0.90721 0.90742 1.25819 0.94835 0.95556 1.02388 1.70052 1.36991 1.23936 1.24684 0.85377 0.78684 0.78672 0.77478 1.21246 1.19503 1.18821 1.46313 1.65202 1.14097 1.09744 1.20904 0.77611 0.87221 0.85173 1.90634 1.51852 1.18088 1.85541 1.22387 0.99438 0.96285 0.88825 0.90642 1.21917 0.87838 1.00845 0.94617 1.60761 1.60891 1.07597 1.01254 1.22231 0.90540 1.00852 0.93554 1.23019 0.98287 0.97590 0.92008 1.61786 1.09106 1.54297 1.01363 1.22382 0.86784 0.99930 1.03115 0.97169 0.91507 0.94138 0.92546 0.76205 0.88780 0.91838 0.82913 0.86965 0.91311 0.93509 0.88451 0.95045 0.89324 0.93753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.75 9.26 71.98 0.67 -6.08 16 2 C 0.27 14.26 2.56 44.24 0.11 14.37 16 3 H 0.00 -0.23 7.58 -2.39 -0.02 -0.25 16 4 C -0.55 -28.92 8.73 25.60 0.22 -28.70 16 5 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -52.99 11.32 21.45 0.24 -52.74 16 8 Si 0.97 41.84 29.54 68.60 2.03 43.87 16 9 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 11 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 12 N -0.70 -29.33 5.07 -446.09 -2.26 -31.59 16 13 C 0.51 20.56 6.04 87.66 0.53 21.09 16 14 O -0.58 -29.46 14.94 -3.03 -0.05 -29.50 16 15 C 0.04 1.30 2.33 44.17 0.10 1.40 16 16 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 17 C 0.08 2.08 5.99 86.31 0.52 2.59 16 18 N -0.68 -13.35 6.91 -513.42 -3.55 -16.90 16 19 C 0.06 1.01 6.72 86.31 0.58 1.59 16 20 C 0.02 0.37 5.60 86.31 0.48 0.85 16 21 N -0.54 -15.23 4.52 -900.99 -4.08 -19.31 16 22 C 0.03 0.74 9.11 127.69 1.16 1.90 16 23 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 24 H 0.07 3.75 6.07 -2.38 -0.01 3.74 16 25 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 27 H 0.40 14.00 8.54 -92.71 -0.79 13.21 16 28 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.35 5.40 8.89 -89.69 -0.80 4.60 16 31 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.10 1.58 8.07 -2.39 -0.02 1.56 16 35 H 0.03 0.80 8.12 -2.39 -0.02 0.78 16 36 H 0.09 2.06 8.03 -2.38 -0.02 2.04 16 37 H 0.04 1.63 6.34 -2.39 -0.02 1.62 16 Total: -1.00 -68.16 298.07 -3.36 -71.52 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: -0.52 Total: 24.42 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 4.83 Total: 10.24 kcal Atomic # 7 Polarization: -110.90 SS G_CDS: -9.64 Total: -120.54 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.05 Total: -29.50 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -68.16 -3.36 -71.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686920788.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.914 kcal (2) G-P(sol) polarization free energy of solvation -68.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds