Wall clock time and date at job start Mon Mar 30 2020 03:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.45797 * 2 1 4 4 C 1.53040 * 109.46153 * 240.02745 * 2 1 3 5 5 C 1.53119 * 109.27505 * 180.81166 * 4 2 1 6 6 C 1.53128 * 109.21344 * 57.62044 * 5 4 2 7 7 H 1.08996 * 109.49993 * 62.31761 * 6 5 4 8 8 N 1.46901 * 109.50239 * 182.43552 * 6 5 4 9 9 C 1.53040 * 109.27213 * 302.43971 * 6 5 4 10 10 N 1.46838 * 109.45741 * 119.97199 * 2 1 3 11 11 C 1.46902 * 111.00248 * 305.85585 * 10 2 1 12 12 C 1.50700 * 109.47243 * 163.94790 * 11 10 2 13 13 O 1.21295 * 120.00034 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00244 * 179.97438 * 12 11 10 15 15 C 1.37095 * 119.99944 * 179.97438 * 14 12 11 16 16 H 1.08001 * 120.00084 * 0.02562 * 15 14 12 17 17 C 1.38951 * 119.99357 * 179.97438 * 15 14 12 18 18 N 1.31409 * 120.00430 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 119.99596 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46699 * 90.00412 * 19 17 15 21 21 H 1.48502 * 109.47109 * 210.00060 * 19 17 15 22 22 H 1.48502 * 109.46979 * 330.00279 * 19 17 15 23 23 H 1.08997 * 109.46498 * 187.38433 * 1 2 3 24 24 H 1.08996 * 109.47003 * 307.38279 * 1 2 3 25 25 H 1.08996 * 109.47241 * 67.38591 * 1 2 3 26 26 H 1.09004 * 109.50732 * 60.87355 * 4 2 1 27 27 H 1.08998 * 109.50213 * 300.74933 * 4 2 1 28 28 H 1.09002 * 109.52435 * 177.55795 * 5 4 2 29 29 H 1.08999 * 109.52569 * 297.68470 * 5 4 2 30 30 H 1.00900 * 110.99792 * 300.00305 * 8 6 5 31 31 H 1.00898 * 111.00236 * 63.95245 * 8 6 5 32 32 H 1.08999 * 109.41283 * 299.06745 * 9 6 5 33 33 H 1.09001 * 109.45216 * 179.12682 * 9 6 5 34 34 H 1.08998 * 109.47143 * 283.94511 * 11 10 2 35 35 H 1.09000 * 109.46947 * 43.94550 * 11 10 2 36 36 H 0.96998 * 119.99471 * 359.97438 * 14 12 11 37 37 H 0.97004 * 119.99987 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 3.5710 -0.7362 -1.2355 6 6 4.0560 -1.4181 0.0469 7 1 3.7145 -2.4531 0.0601 8 7 5.5238 -1.3844 0.0953 9 6 3.4863 -0.6778 1.2592 10 7 2.0192 -0.6917 1.1994 11 6 1.4371 -0.1105 2.4165 12 6 1.6327 -1.0604 3.5700 13 8 2.2007 -2.1178 3.3952 14 7 1.1766 -0.7350 4.7958 15 6 1.3541 -1.5995 5.8450 16 1 1.8598 -2.5410 5.6893 17 6 0.8842 -1.2637 7.1088 18 7 0.2694 -0.1179 7.2982 19 14 1.1255 -2.4419 8.5383 20 1 2.4156 -2.1457 9.2114 21 1 0.0125 -2.2784 9.5077 22 1 1.1401 -3.8379 8.0321 23 1 -0.3632 -1.0191 0.1321 24 1 -0.3633 0.6239 0.8166 25 1 -0.3633 0.3951 -0.9486 26 1 1.6897 -0.1981 -2.1400 27 1 1.6659 -1.7446 -1.2577 28 1 3.9380 -1.2864 -2.1019 29 1 3.9458 0.2868 -1.2682 30 1 5.9228 -1.8649 -0.6972 31 1 5.8621 -0.4354 0.1505 32 1 3.8402 0.3531 1.2533 33 1 3.8172 -1.1702 2.1736 34 1 1.9293 0.8364 2.6382 35 1 0.3716 0.0609 2.2636 36 1 0.7227 0.1107 4.9356 37 1 -0.0590 0.1163 8.1805 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690838159.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:44 Heat of formation + Delta-G solvation = -37.459723 kcal Electronic energy + Delta-G solvation = -17962.062847 eV Core-core repulsion = 15159.791302 eV Total energy + Delta-G solvation = -2802.271545 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.51933 -37.68059 -34.96433 -33.85964 -32.41444 -31.14041 -29.94409 -27.57932 -25.55288 -24.46302 -22.84395 -20.97127 -19.68174 -19.05195 -17.77734 -16.34389 -15.84554 -15.49447 -14.76875 -14.51905 -14.28939 -13.97559 -13.84101 -13.58579 -13.43235 -12.85861 -12.33520 -12.24333 -11.84046 -11.80776 -11.45234 -11.39590 -11.03878 -10.84707 -10.78976 -10.54936 -10.34058 -10.18649 -10.10411 -9.41182 -8.61978 -8.35759 -7.89326 -7.77035 -6.35073 -3.75345 3.22668 3.30639 3.37031 3.91640 4.00737 4.26746 4.64487 4.78546 4.90781 5.01577 5.14793 5.24703 5.31863 5.46586 5.50387 5.58439 5.64020 5.73197 5.80997 5.86717 5.90922 6.04273 6.09794 6.20659 6.28021 6.34165 6.45779 6.54738 7.18915 7.36290 7.49790 7.52278 7.61777 8.14096 8.70081 9.25788 9.62683 10.15445 10.82970 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035129 B = 0.005603 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.861436 B = 4995.880818 C = 5544.901579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 H 0.034 0.966 4 C -0.105 4.105 5 C -0.154 4.154 6 C 0.096 3.904 7 H 0.091 0.909 8 N -0.842 5.842 9 C 0.068 3.932 10 N -0.508 5.508 11 C 0.041 3.959 12 C 0.446 3.554 13 O -0.573 6.573 14 N -0.568 5.568 15 C -0.296 4.296 16 H 0.103 0.897 17 C 0.021 3.979 18 N -0.905 5.905 19 Si 0.929 3.071 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.270 1.270 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.339 0.661 31 H 0.335 0.665 32 H 0.018 0.982 33 H 0.102 0.898 34 H 0.046 0.954 35 H 0.094 0.906 36 H 0.391 0.609 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.866 3.683 -15.216 15.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 H 0.052 0.948 4 C -0.144 4.144 5 C -0.194 4.194 6 C -0.015 4.015 7 H 0.109 0.891 8 N -0.369 5.369 9 C -0.060 4.060 10 N -0.233 5.233 11 C -0.090 4.090 12 C 0.231 3.769 13 O -0.456 6.456 14 N -0.205 5.205 15 C -0.425 4.425 16 H 0.120 0.880 17 C -0.180 4.180 18 N -0.546 5.546 19 Si 0.756 3.244 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.194 1.194 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.151 0.849 31 H 0.147 0.853 32 H 0.036 0.964 33 H 0.120 0.880 34 H 0.064 0.936 35 H 0.112 0.888 36 H 0.224 0.776 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.950 2.130 -14.491 14.941 hybrid contribution -0.054 1.514 -0.002 1.515 sum 2.896 3.644 -14.494 15.223 Atomic orbital electron populations 1.21946 0.94432 1.03068 1.01300 1.21637 0.95451 0.95019 0.90841 0.94837 1.21530 0.94799 1.01732 0.96330 1.22484 0.97051 1.00595 0.99250 1.21448 0.86565 1.00846 0.92685 0.89069 1.58767 1.06849 1.21599 1.49735 1.22059 0.86539 0.97337 1.00093 1.61403 1.07067 1.54406 1.00437 1.21953 1.00901 0.95781 0.90361 1.19784 0.84838 0.88668 0.83636 1.90518 1.45997 1.25425 1.83685 1.41864 1.51746 1.20065 1.06864 1.19697 1.34985 1.01300 0.86553 0.87957 1.25236 0.96892 0.97056 0.98833 1.69614 1.39051 1.21923 1.24045 0.85875 0.77725 0.80410 0.80377 1.20484 1.21008 1.19432 0.91301 0.92313 0.92446 0.91900 0.90793 0.92240 0.92712 0.84857 0.85285 0.96383 0.87983 0.93641 0.88788 0.77615 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.57 37.16 0.32 -1.50 16 2 C 0.08 1.06 2.44 -67.72 -0.17 0.89 16 3 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.11 -1.22 5.37 -26.65 -0.14 -1.36 16 5 C -0.15 -1.72 5.57 -26.60 -0.15 -1.87 16 6 C 0.10 1.35 3.41 -67.63 -0.23 1.12 16 7 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 8 N -0.84 -10.33 9.26 -4.59 -0.04 -10.37 16 9 C 0.07 1.15 4.65 -3.83 -0.02 1.13 16 10 N -0.51 -8.69 4.12 -228.13 -0.94 -9.64 16 11 C 0.04 0.76 5.26 -4.97 -0.03 0.74 16 12 C 0.45 10.79 7.47 -10.98 -0.08 10.71 16 13 O -0.57 -15.86 14.42 5.54 0.08 -15.78 16 14 N -0.57 -14.71 5.29 -10.96 -0.06 -14.77 16 15 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 16 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 17 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 18 N -0.90 -25.00 13.05 55.50 0.72 -24.28 16 19 Si 0.93 21.45 29.55 -169.99 -5.02 16.42 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.06 0.71 6.43 -51.93 -0.33 0.38 16 25 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.34 3.37 9.04 -39.29 -0.36 3.01 16 31 H 0.34 3.64 8.98 -39.29 -0.35 3.29 16 32 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.10 2.16 6.35 -51.93 -0.33 1.83 16 34 H 0.05 0.79 8.05 -51.93 -0.42 0.37 16 35 H 0.09 1.58 5.55 -51.93 -0.29 1.29 16 36 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 37 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 295.99 15.07 4.46 4.46 Total: -1.00 -31.22 295.99 -7.25 -38.47 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -5.72 Total: 13.70 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -0.74 Total: 1.77 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.32 Total: -59.05 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.08 Total: -15.78 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.22 -7.25 -38.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690838159.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.009 kcal (2) G-P(sol) polarization free energy of solvation -31.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds