Wall clock time and date at job start Mon Mar 30 2020 03:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.45797 * 2 1 4 4 C 1.53040 * 109.46153 * 240.02745 * 2 1 3 5 5 C 1.53119 * 109.27505 * 180.81166 * 4 2 1 6 6 C 1.53128 * 109.21344 * 57.62044 * 5 4 2 7 7 H 1.08996 * 109.49993 * 62.31761 * 6 5 4 8 8 N 1.46901 * 109.50239 * 182.43552 * 6 5 4 9 9 C 1.53040 * 109.27213 * 302.43971 * 6 5 4 10 10 N 1.46838 * 109.45741 * 119.97199 * 2 1 3 11 11 C 1.46902 * 111.00248 * 305.85585 * 10 2 1 12 12 C 1.50700 * 109.47243 * 163.94790 * 11 10 2 13 13 O 1.21295 * 120.00034 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00244 * 179.97438 * 12 11 10 15 15 C 1.37095 * 119.99944 * 179.97438 * 14 12 11 16 16 H 1.08001 * 120.00084 * 0.02562 * 15 14 12 17 17 C 1.38951 * 119.99357 * 179.97438 * 15 14 12 18 18 N 1.31409 * 120.00430 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 119.99596 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46699 * 90.00412 * 19 17 15 21 21 H 1.48502 * 109.47109 * 210.00060 * 19 17 15 22 22 H 1.48502 * 109.46979 * 330.00279 * 19 17 15 23 23 H 1.08997 * 109.46498 * 187.38433 * 1 2 3 24 24 H 1.08996 * 109.47003 * 307.38279 * 1 2 3 25 25 H 1.08996 * 109.47241 * 67.38591 * 1 2 3 26 26 H 1.09004 * 109.50732 * 60.87355 * 4 2 1 27 27 H 1.08998 * 109.50213 * 300.74933 * 4 2 1 28 28 H 1.09002 * 109.52435 * 177.55795 * 5 4 2 29 29 H 1.08999 * 109.52569 * 297.68470 * 5 4 2 30 30 H 1.00900 * 110.99792 * 300.00305 * 8 6 5 31 31 H 1.00898 * 111.00236 * 63.95245 * 8 6 5 32 32 H 1.08999 * 109.41283 * 299.06745 * 9 6 5 33 33 H 1.09001 * 109.45216 * 179.12682 * 9 6 5 34 34 H 1.08998 * 109.47143 * 283.94511 * 11 10 2 35 35 H 1.09000 * 109.46947 * 43.94550 * 11 10 2 36 36 H 0.96998 * 119.99471 * 359.97438 * 14 12 11 37 37 H 0.97004 * 119.99987 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 3.5710 -0.7362 -1.2355 6 6 4.0560 -1.4181 0.0469 7 1 3.7145 -2.4531 0.0601 8 7 5.5238 -1.3844 0.0953 9 6 3.4863 -0.6778 1.2592 10 7 2.0192 -0.6917 1.1994 11 6 1.4371 -0.1105 2.4165 12 6 1.6327 -1.0604 3.5700 13 8 2.2007 -2.1178 3.3952 14 7 1.1766 -0.7350 4.7958 15 6 1.3541 -1.5995 5.8450 16 1 1.8598 -2.5410 5.6893 17 6 0.8842 -1.2637 7.1088 18 7 0.2694 -0.1179 7.2982 19 14 1.1255 -2.4419 8.5383 20 1 2.4156 -2.1457 9.2114 21 1 0.0125 -2.2784 9.5077 22 1 1.1401 -3.8379 8.0321 23 1 -0.3632 -1.0191 0.1321 24 1 -0.3633 0.6239 0.8166 25 1 -0.3633 0.3951 -0.9486 26 1 1.6897 -0.1981 -2.1400 27 1 1.6659 -1.7446 -1.2577 28 1 3.9380 -1.2864 -2.1019 29 1 3.9458 0.2868 -1.2682 30 1 5.9228 -1.8649 -0.6972 31 1 5.8621 -0.4354 0.1505 32 1 3.8402 0.3531 1.2533 33 1 3.8172 -1.1702 2.1736 34 1 1.9293 0.8364 2.6382 35 1 0.3716 0.0609 2.2636 36 1 0.7227 0.1107 4.9356 37 1 -0.0590 0.1163 8.1805 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690838159.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:44 Heat of formation + Delta-G solvation = -62.702100 kcal Electronic energy + Delta-G solvation = -17963.157439 eV Core-core repulsion = 15159.791302 eV Total energy + Delta-G solvation = -2803.366136 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.87834 -39.43695 -36.19679 -35.82612 -33.63177 -33.21672 -30.96520 -29.11149 -26.93412 -26.10463 -24.09857 -22.11614 -20.98372 -20.71440 -19.84604 -17.82592 -17.28584 -16.80359 -16.48094 -15.98233 -15.68142 -15.60351 -15.08587 -15.01738 -14.74900 -14.18662 -13.83512 -13.50809 -13.41496 -13.01712 -12.95769 -12.78125 -12.57740 -12.41079 -12.11776 -11.96312 -11.86259 -11.74787 -11.44155 -11.20360 -10.28476 -9.98512 -9.55638 -9.16655 -8.45042 -5.93526 1.38394 1.41421 1.54592 2.08164 2.29222 2.69164 3.21167 3.33733 3.74605 3.79277 3.93343 3.98539 4.14325 4.28450 4.32807 4.43795 4.46285 4.52262 4.62812 4.69373 4.89598 4.91425 5.01531 5.03966 5.15143 5.21505 5.29258 5.41883 5.47425 5.92360 6.10859 6.23545 6.33539 6.62691 6.64970 7.15207 7.58727 8.15733 8.72569 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035129 B = 0.005603 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.861436 B = 4995.880818 C = 5544.901579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 H 0.046 0.954 4 C -0.104 4.104 5 C -0.143 4.143 6 C 0.103 3.897 7 H 0.062 0.938 8 N -0.852 5.852 9 C 0.071 3.929 10 N -0.527 5.527 11 C 0.054 3.946 12 C 0.441 3.559 13 O -0.613 6.613 14 N -0.577 5.577 15 C -0.332 4.332 16 H 0.076 0.924 17 C -0.013 4.013 18 N -0.922 5.922 19 Si 0.992 3.008 20 H -0.271 1.271 21 H -0.269 1.269 22 H -0.274 1.274 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.354 0.646 31 H 0.345 0.655 32 H 0.030 0.970 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.115 0.885 36 H 0.395 0.605 37 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.658 4.819 -16.589 17.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 H 0.064 0.936 4 C -0.142 4.142 5 C -0.183 4.183 6 C -0.009 4.009 7 H 0.080 0.920 8 N -0.383 5.383 9 C -0.057 4.057 10 N -0.253 5.253 11 C -0.077 4.077 12 C 0.229 3.771 13 O -0.499 6.499 14 N -0.215 5.215 15 C -0.461 4.461 16 H 0.094 0.906 17 C -0.212 4.212 18 N -0.563 5.563 19 Si 0.816 3.184 20 H -0.197 1.197 21 H -0.194 1.194 22 H -0.199 1.199 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.105 0.895 26 H 0.112 0.888 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.168 0.832 31 H 0.158 0.842 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.133 0.867 36 H 0.229 0.771 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.738 3.296 -15.890 16.457 hybrid contribution 0.030 1.160 0.394 1.226 sum 2.768 4.456 -15.495 16.359 Atomic orbital electron populations 1.21947 0.93485 1.02187 1.02930 1.21822 0.96248 0.95450 0.89627 0.93595 1.21564 0.94967 1.01190 0.96479 1.22380 0.96791 1.01184 0.97910 1.21234 0.87487 0.99094 0.93091 0.91952 1.58660 1.06035 1.22647 1.50933 1.21919 0.86862 0.97674 0.99237 1.61373 1.07119 1.55701 1.01109 1.21808 1.02554 0.94449 0.88918 1.20836 0.82957 0.88922 0.84415 1.90489 1.47334 1.27582 1.84462 1.41928 1.52347 1.19983 1.07193 1.19641 1.36780 1.01424 0.88282 0.90556 1.26015 0.95964 0.98636 1.00626 1.69673 1.38821 1.22802 1.25005 0.84940 0.78274 0.77946 0.77234 1.19672 1.19388 1.19896 0.93005 0.92440 0.89474 0.88796 0.92095 0.90203 0.91356 0.83206 0.84173 0.95228 0.93155 0.92060 0.86705 0.77130 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.57 71.98 0.62 -2.62 16 2 C 0.08 1.86 2.44 44.94 0.11 1.97 16 3 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 4 C -0.10 -2.10 5.37 30.65 0.16 -1.93 16 5 C -0.14 -2.80 5.57 30.68 0.17 -2.63 16 6 C 0.10 2.83 3.41 44.97 0.15 2.98 16 7 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 8 N -0.85 -20.22 9.26 -168.45 -1.56 -21.78 16 9 C 0.07 2.44 4.65 86.33 0.40 2.84 16 10 N -0.53 -17.87 4.12 -875.66 -3.61 -21.48 16 11 C 0.05 1.98 5.26 85.56 0.45 2.43 16 12 C 0.44 22.11 7.47 87.66 0.65 22.76 16 13 O -0.61 -35.66 14.42 -3.08 -0.04 -35.71 16 14 N -0.58 -30.77 5.29 -306.98 -1.62 -32.39 16 15 C -0.33 -19.47 9.68 84.04 0.81 -18.65 16 16 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 17 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 18 N -0.92 -50.80 13.05 21.66 0.28 -50.51 16 19 Si 0.99 44.09 29.55 68.60 2.03 46.12 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 23 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.06 1.26 6.43 -2.39 -0.02 1.24 16 25 H 0.09 1.39 8.13 -2.39 -0.02 1.37 16 26 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.35 6.52 9.04 -89.69 -0.81 5.71 16 31 H 0.34 7.02 8.98 -89.70 -0.81 6.21 16 32 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 2.24 6.35 -2.39 -0.02 2.22 16 34 H 0.06 2.07 8.05 -2.39 -0.02 2.05 16 35 H 0.12 3.74 5.55 -2.39 -0.01 3.73 16 36 H 0.40 19.97 7.90 -92.71 -0.73 19.24 16 37 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -69.68 295.99 -1.78 -71.46 By element: Atomic # 1 Polarization: 38.64 SS G_CDS: -1.26 Total: 37.38 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 4.00 Total: 6.91 kcal Atomic # 7 Polarization: -119.65 SS G_CDS: -6.51 Total: -126.16 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -0.04 Total: -35.71 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -69.68 -1.78 -71.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690838159.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.755 kcal (2) G-P(sol) polarization free energy of solvation -69.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds