Wall clock time and date at job start Mon Mar 30 2020 03:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47427 * 2 1 4 4 C 1.53001 * 109.47345 * 119.99818 * 2 1 3 5 5 C 1.50694 * 109.47168 * 184.99962 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 N 1.46901 * 109.47096 * 239.99858 * 2 1 3 14 14 C 1.46900 * 110.99875 * 85.00163 * 13 2 1 15 15 H 1.08994 * 110.88859 * 34.29868 * 14 13 2 16 16 C 1.55161 * 111.00453 * 158.18309 * 14 13 2 17 17 C 1.54325 * 102.94185 * 153.57337 * 16 14 13 18 18 N 1.47017 * 107.27068 * 337.80560 * 17 16 14 19 19 C 1.34780 * 125.64709 * 178.99658 * 18 17 16 20 20 N 1.34775 * 119.99873 * 359.97438 * 19 18 17 21 21 O 1.21583 * 119.99994 * 179.97438 * 19 18 17 22 22 C 1.47466 * 108.72525 * 358.97404 * 18 17 16 23 23 H 1.09006 * 109.46969 * 299.99825 * 1 2 3 24 24 H 1.08995 * 109.47237 * 60.00111 * 1 2 3 25 25 H 1.09001 * 109.47112 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46922 * 64.99664 * 4 2 1 27 27 H 1.09003 * 109.46836 * 305.00420 * 4 2 1 28 28 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 29 29 H 1.00899 * 110.99833 * 321.04831 * 13 2 1 30 30 H 1.09002 * 110.71543 * 271.93661 * 16 14 13 31 31 H 1.08998 * 110.71564 * 35.20716 * 16 14 13 32 32 H 1.09001 * 109.87882 * 97.22546 * 17 16 14 33 33 H 1.08994 * 109.88001 * 218.38544 * 17 16 14 34 34 H 0.96998 * 119.99868 * 359.97438 * 20 19 18 35 35 H 0.97001 * 120.00143 * 180.02562 * 20 19 18 36 36 H 1.08998 * 110.34719 * 265.25267 * 22 18 17 37 37 H 1.09008 * 110.40695 * 142.91532 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0854 0.5396 7 6 4.2305 -1.1935 2.3578 8 7 3.5765 -1.8377 3.2995 9 14 6.0922 -1.0622 2.4360 10 1 6.5873 -1.7621 3.6486 11 1 6.6838 -1.6882 1.2264 12 1 6.4855 0.3685 2.4957 13 7 2.0197 -0.6925 -1.1994 14 6 2.0825 0.2226 -2.3469 15 1 2.3515 1.2291 -2.0269 16 6 3.0699 -0.3016 -3.4228 17 6 2.5235 0.3199 -4.7255 18 7 1.1073 0.6407 -4.4955 19 6 0.2776 1.2170 -5.3876 20 7 0.7312 1.5503 -6.6122 21 8 -0.8801 1.4363 -5.0877 22 6 0.7444 0.2270 -3.1274 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.7516 -1.7715 1.2056 27 1 1.6054 -0.2617 2.1370 28 1 4.0610 -2.2451 4.0346 29 1 1.4495 -1.4979 -1.4100 30 1 4.0817 0.0509 -3.2221 31 1 3.0426 -1.3900 -3.4737 32 1 3.0759 1.2293 -4.9624 33 1 2.6137 -0.3948 -5.5434 34 1 1.6548 1.3757 -6.8514 35 1 0.1341 1.9654 -7.2542 36 1 0.3073 -0.7715 -3.1367 37 1 0.0500 0.9419 -2.6857 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695811763.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:24 Heat of formation + Delta-G solvation = -34.944744 kcal Electronic energy + Delta-G solvation = -17661.040130 eV Core-core repulsion = 14858.877643 eV Total energy + Delta-G solvation = -2802.162487 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.23939 -38.06094 -35.81427 -33.78608 -32.63041 -31.21499 -29.50154 -27.28198 -27.08508 -23.49409 -22.94230 -20.77843 -20.13107 -19.75595 -18.32898 -17.01827 -16.26680 -16.14622 -15.07066 -14.84196 -14.50643 -14.28160 -13.95333 -13.28918 -13.12290 -12.67272 -12.48650 -12.31186 -11.93100 -11.71220 -11.43251 -11.31299 -10.92078 -10.72411 -10.55772 -10.40741 -10.31312 -10.04766 -9.84792 -9.22911 -8.99158 -8.69147 -8.24526 -7.70482 -5.86861 -3.84722 2.67211 3.10842 3.40733 3.44944 3.47511 4.08565 4.49321 4.57016 4.72331 4.87374 5.05961 5.21924 5.39314 5.48056 5.50734 5.71622 5.78794 5.87739 5.98337 6.01442 6.05866 6.18722 6.28433 6.44907 6.64607 6.69280 6.81153 7.01133 7.53270 7.67315 7.78353 7.98288 8.02482 8.15027 8.50798 8.60112 9.20221 9.76429 11.25239 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.037542 B = 0.005147 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.655570 B = 5438.844011 C = 6047.373530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.088 3.912 3 H 0.066 0.934 4 C 0.033 3.967 5 C -0.489 4.489 6 H 0.058 0.942 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.890 3.110 10 H -0.291 1.291 11 H -0.278 1.278 12 H -0.280 1.280 13 N -0.646 5.646 14 C 0.080 3.920 15 H 0.090 0.910 16 C -0.120 4.120 17 C 0.098 3.902 18 N -0.633 5.633 19 C 0.721 3.279 20 N -0.867 5.867 21 O -0.597 6.597 22 C 0.094 3.906 23 H 0.057 0.943 24 H 0.042 0.958 25 H 0.051 0.949 26 H 0.017 0.983 27 H 0.018 0.982 28 H 0.258 0.742 29 H 0.335 0.665 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.396 0.604 35 H 0.413 0.587 36 H 0.064 0.936 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.041 4.374 -17.637 18.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.022 4.022 3 H 0.084 0.916 4 C -0.004 4.004 5 C -0.528 4.528 6 H 0.076 0.924 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.719 3.281 10 H -0.217 1.217 11 H -0.204 1.204 12 H -0.206 1.206 13 N -0.275 5.275 14 C -0.033 4.033 15 H 0.108 0.892 16 C -0.158 4.158 17 C -0.025 4.025 18 N -0.372 5.372 19 C 0.421 3.579 20 N -0.436 5.436 21 O -0.475 6.475 22 C -0.032 4.032 23 H 0.076 0.924 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.035 0.965 27 H 0.036 0.964 28 H 0.067 0.933 29 H 0.154 0.846 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.224 0.776 35 H 0.244 0.756 36 H 0.082 0.918 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.124 4.453 -16.970 17.673 hybrid contribution 0.332 0.150 -0.578 0.683 sum -1.792 4.603 -17.548 18.230 Atomic orbital electron populations 1.22699 0.99238 1.01400 1.01064 1.21900 0.90116 0.98130 0.92003 0.91597 1.19113 0.96212 0.95423 0.89700 1.21104 0.91872 1.32956 1.06858 0.92415 1.25010 0.97955 0.95932 0.96042 1.69955 1.35278 1.36890 1.12374 0.86696 0.86445 0.77900 0.77081 1.21678 1.20406 1.20601 1.60624 1.57322 1.07830 1.01708 1.22870 0.91823 0.97826 0.90741 0.89154 1.22631 0.99896 1.01556 0.91753 1.22097 0.81401 0.99577 0.99428 1.47557 1.10979 1.63803 1.14837 1.15506 0.83979 0.78059 0.80374 1.42973 1.16275 1.69447 1.14859 1.90963 1.16587 1.61438 1.78561 1.23257 0.99551 1.00048 0.80313 0.92398 0.93920 0.92946 0.96453 0.96383 0.93283 0.84569 0.89474 0.89964 0.91758 0.91812 0.77613 0.75565 0.91755 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.07 8.99 37.16 0.33 -2.74 16 2 C 0.09 1.69 2.53 -67.71 -0.17 1.52 16 3 H 0.07 1.30 7.47 -51.93 -0.39 0.92 16 4 C 0.03 0.82 4.65 -27.89 -0.13 0.69 16 5 C -0.49 -13.48 8.84 -34.44 -0.30 -13.78 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.33 16 8 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 9 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 13 N -0.65 -11.07 5.88 -97.50 -0.57 -11.65 16 14 C 0.08 1.12 3.32 -65.56 -0.22 0.90 16 15 H 0.09 1.34 7.50 -51.93 -0.39 0.95 16 16 C -0.12 -1.37 6.65 -24.89 -0.17 -1.54 16 17 C 0.10 0.93 6.15 -3.07 -0.02 0.91 16 18 N -0.63 -7.89 3.33 -176.21 -0.59 -8.47 16 19 C 0.72 9.80 8.76 -86.92 -0.76 9.04 16 20 N -0.87 -7.41 8.83 27.63 0.24 -7.16 16 21 O -0.60 -10.83 17.44 5.29 0.09 -10.74 16 22 C 0.09 1.28 5.52 -2.50 -0.01 1.27 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.04 0.64 5.76 -51.93 -0.30 0.34 16 25 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 26 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.34 5.41 7.98 -39.29 -0.31 5.09 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.40 2.28 7.81 -40.82 -0.32 1.96 16 35 H 0.41 2.92 8.93 -40.82 -0.36 2.55 16 36 H 0.06 0.88 7.77 -51.93 -0.40 0.48 16 37 H 0.08 1.18 6.60 -51.92 -0.34 0.83 16 LS Contribution 301.50 15.07 4.54 4.54 Total: -1.00 -33.42 301.50 -7.85 -41.27 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.74 Total: 4.32 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -1.55 Total: -2.41 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.18 Total: -53.73 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.42 -7.85 -41.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695811763.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.325 kcal (2) G-P(sol) polarization free energy of solvation -33.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds