Wall clock time and date at job start Mon Mar 30 2020 03:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.36722 * 2 1 4 4 C 1.54379 * 110.41442 * 237.51843 * 2 1 3 5 5 C 1.54259 * 105.06460 * 217.36951 * 4 2 1 6 6 H 1.08996 * 110.32374 * 118.89333 * 5 4 2 7 7 N 1.46898 * 110.32630 * 241.00476 * 5 4 2 8 8 C 1.54386 * 105.05829 * 0.02562 * 5 4 2 9 9 N 1.48558 * 110.41062 * 122.34797 * 2 1 3 10 10 C 1.46906 * 111.00058 * 277.81794 * 9 2 1 11 11 C 1.50701 * 109.46965 * 169.99976 * 10 9 2 12 12 O 1.21283 * 120.00405 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99669 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00000 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47352 * 179.97438 * 14 13 11 16 16 H 1.07995 * 119.99841 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00044 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00516 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00000 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47166 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47299 * 120.00036 * 19 17 15 22 22 H 1.48501 * 109.47478 * 239.99887 * 19 17 15 23 23 H 1.09001 * 109.47176 * 297.65447 * 1 2 3 24 24 H 1.09003 * 109.46975 * 57.64967 * 1 2 3 25 25 H 1.08999 * 109.47301 * 177.65281 * 1 2 3 26 26 H 1.09000 * 110.32213 * 336.27088 * 4 2 1 27 27 H 1.09004 * 110.32323 * 98.37111 * 4 2 1 28 28 H 1.00897 * 110.99833 * 180.02562 * 7 5 4 29 29 H 1.00910 * 110.99640 * 303.95333 * 7 5 4 30 30 H 1.08996 * 110.40505 * 265.07372 * 8 5 4 31 31 H 1.08992 * 110.41287 * 142.63152 * 8 5 4 32 32 H 1.08993 * 109.47164 * 289.99919 * 10 9 2 33 33 H 1.08996 * 109.46920 * 49.99953 * 10 9 2 34 34 H 0.97001 * 120.00106 * 359.97438 * 13 11 10 35 35 H 1.09008 * 109.47033 * 300.00175 * 14 13 11 36 36 H 1.09005 * 109.47366 * 59.99240 * 14 13 11 37 37 H 0.97001 * 120.00440 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0685 -0.7770 -1.2205 5 6 3.3178 -1.5197 -0.7036 6 1 3.1861 -2.5971 -0.8035 7 7 4.5121 -1.0821 -1.4386 8 6 3.4287 -1.1295 0.7860 9 7 2.0481 -0.7450 1.1762 10 6 2.0569 0.1041 2.3751 11 6 2.3503 -0.7416 3.5874 12 8 2.5344 -1.9341 3.4649 13 7 2.4080 -0.1727 4.8079 14 6 2.6937 -0.9947 5.9864 15 6 2.7026 -0.1238 7.2162 16 1 2.5146 0.9361 7.1286 17 6 2.9507 -0.6800 8.4531 18 7 3.1801 -1.9706 8.5598 19 14 2.9624 0.3997 9.9774 20 1 2.6791 1.8052 9.5906 21 1 1.9215 -0.0716 10.9259 22 1 4.2953 0.3238 10.6276 23 1 -0.3633 0.4770 0.9103 24 1 -0.3633 0.5499 -0.8682 25 1 -0.3634 -1.0268 -0.0421 26 1 1.3236 -1.4898 -1.5742 27 1 2.3400 -0.0866 -2.0191 28 1 5.3358 -1.5623 -1.1086 29 1 4.3925 -1.2109 -2.4323 30 1 4.1068 -0.2849 0.9081 31 1 3.7686 -1.9796 1.3774 32 1 2.8251 0.8703 2.2720 33 1 1.0829 0.5794 2.4907 34 1 2.2610 0.7811 4.9059 35 1 1.9260 -1.7616 6.0893 36 1 3.6681 -1.4694 5.8707 37 1 3.3543 -2.3620 9.4301 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702642836.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:58 Heat of formation + Delta-G solvation = -36.501323 kcal Electronic energy + Delta-G solvation = -17417.386173 eV Core-core repulsion = 14615.156188 eV Total energy + Delta-G solvation = -2802.229985 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.65526 -38.11625 -34.34597 -34.02396 -32.29234 -31.74588 -29.25533 -27.59482 -26.01282 -24.78985 -22.37095 -20.65632 -20.14160 -19.55679 -17.11148 -16.31331 -15.85569 -15.53867 -15.28199 -14.94468 -14.83991 -14.25115 -14.06941 -13.51482 -13.20688 -12.55659 -12.48037 -12.17246 -11.96234 -11.85481 -11.62562 -11.25263 -11.02795 -10.96526 -10.92413 -10.85039 -10.81173 -10.29409 -9.35312 -8.99556 -8.89887 -8.71132 -8.30368 -7.81194 -6.14738 -4.21426 3.24597 3.31568 3.34710 3.46249 3.71413 4.21811 4.38025 4.50633 4.56940 4.72186 4.97805 5.21337 5.22175 5.38674 5.40623 5.45386 5.47796 5.64561 5.65255 5.77355 5.83732 5.92570 5.97035 6.15878 6.23616 6.80480 6.98818 7.08618 7.23699 7.36457 7.50659 7.55753 7.71351 7.99887 8.68889 8.82845 9.19011 9.45682 10.95556 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.045044 B = 0.004331 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.469082 B = 6463.585147 C = 6752.020462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.059 3.941 3 H 0.053 0.947 4 C -0.113 4.113 5 C 0.083 3.917 6 H 0.048 0.952 7 N -0.845 5.845 8 C 0.042 3.958 9 N -0.484 5.484 10 C 0.024 3.976 11 C 0.500 3.500 12 O -0.539 6.539 13 N -0.717 5.717 14 C 0.251 3.749 15 C -0.542 4.542 16 H 0.063 0.937 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.903 3.097 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.343 0.657 29 H 0.340 0.660 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.389 0.611 35 H 0.026 0.974 36 H 0.025 0.975 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.732 5.267 -18.702 19.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.050 4.050 3 H 0.071 0.929 4 C -0.151 4.151 5 C -0.029 4.029 6 H 0.066 0.934 7 N -0.376 5.376 8 C -0.086 4.086 9 N -0.208 5.208 10 C -0.107 4.107 11 C 0.284 3.716 12 O -0.416 6.416 13 N -0.366 5.366 14 C 0.130 3.870 15 C -0.580 4.580 16 H 0.081 0.919 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.155 0.845 29 H 0.152 0.848 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.221 0.779 35 H 0.044 0.956 36 H 0.043 0.957 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.053 4.495 -18.176 18.836 hybrid contribution 0.546 0.729 0.585 1.082 sum -1.507 5.223 -17.591 18.412 Atomic orbital electron populations 1.21740 0.93841 1.02591 1.01340 1.22631 0.96019 0.95957 0.90347 0.92945 1.22420 0.96342 0.99113 0.97246 1.22077 0.90009 0.97039 0.93779 0.93440 1.58843 1.05015 1.65566 1.08188 1.23171 0.89831 1.01589 0.94005 1.65098 1.18554 1.35911 1.01282 1.22212 1.02761 0.94807 0.90962 1.20266 0.78318 0.88665 0.84378 1.90640 1.49651 1.15360 1.85996 1.46444 1.70491 1.12179 1.07503 1.19073 0.96713 0.90841 0.80333 1.21276 1.50444 0.94760 0.91542 0.91874 1.24955 0.94768 0.95130 0.99194 1.69989 1.46939 1.10652 1.24758 0.86368 0.77753 0.80368 0.82456 1.19641 1.20801 1.20813 0.92543 0.92464 0.91709 0.90959 0.90690 0.84482 0.84766 0.93077 0.89034 0.92174 0.88397 0.77895 0.95583 0.95693 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.36 37.16 0.35 -1.07 16 2 C 0.06 0.68 2.88 -66.07 -0.19 0.49 16 3 H 0.05 0.59 7.99 -51.93 -0.42 0.18 16 4 C -0.11 -1.16 6.29 -25.35 -0.16 -1.32 16 5 C 0.08 0.94 4.19 -66.33 -0.28 0.67 16 6 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 7 N -0.85 -7.96 9.16 -3.49 -0.03 -7.99 16 8 C 0.04 0.62 5.64 -2.19 -0.01 0.60 16 9 N -0.48 -7.23 4.66 -223.59 -1.04 -8.27 16 10 C 0.02 0.37 5.27 -4.97 -0.03 0.35 16 11 C 0.50 10.29 7.68 -10.98 -0.08 10.20 16 12 O -0.54 -13.31 15.22 5.56 0.08 -13.23 16 13 N -0.72 -15.41 5.55 -61.47 -0.34 -15.75 16 14 C 0.25 6.78 5.43 -5.20 -0.03 6.75 16 15 C -0.54 -14.88 9.28 -34.44 -0.32 -15.20 16 16 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 19 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H 0.06 0.59 7.28 -51.93 -0.38 0.21 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 26 H 0.07 0.70 7.82 -51.93 -0.41 0.29 16 27 H 0.07 0.69 7.95 -51.93 -0.41 0.27 16 28 H 0.34 2.95 9.08 -39.29 -0.36 2.60 16 29 H 0.34 2.49 9.01 -39.29 -0.35 2.14 16 30 H 0.05 0.75 7.67 -51.93 -0.40 0.35 16 31 H 0.09 1.57 7.23 -51.93 -0.38 1.20 16 32 H 0.06 0.82 7.77 -51.93 -0.40 0.42 16 33 H 0.10 1.30 7.16 -51.93 -0.37 0.92 16 34 H 0.39 7.14 8.32 -40.82 -0.34 6.80 16 35 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 36 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 304.03 15.07 4.58 4.58 Total: -1.00 -32.58 304.03 -7.74 -40.31 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -5.86 Total: 6.87 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -0.85 Total: 3.14 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -0.68 Total: -57.66 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.08 Total: -13.23 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.58 -7.74 -40.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702642836.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.811 kcal (2) G-P(sol) polarization free energy of solvation -32.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds