Wall clock time and date at job start Mon Mar 30 2020 03:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.36722 * 2 1 4 4 C 1.54379 * 110.41442 * 237.51843 * 2 1 3 5 5 C 1.54259 * 105.06460 * 217.36951 * 4 2 1 6 6 H 1.08996 * 110.32374 * 118.89333 * 5 4 2 7 7 N 1.46898 * 110.32630 * 241.00476 * 5 4 2 8 8 C 1.54386 * 105.05829 * 0.02562 * 5 4 2 9 9 N 1.48558 * 110.41062 * 122.34797 * 2 1 3 10 10 C 1.46906 * 111.00058 * 277.81794 * 9 2 1 11 11 C 1.50701 * 109.46965 * 169.99976 * 10 9 2 12 12 O 1.21283 * 120.00405 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99669 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00000 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47352 * 179.97438 * 14 13 11 16 16 H 1.07995 * 119.99841 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00044 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00516 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00000 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47166 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47299 * 120.00036 * 19 17 15 22 22 H 1.48501 * 109.47478 * 239.99887 * 19 17 15 23 23 H 1.09001 * 109.47176 * 297.65447 * 1 2 3 24 24 H 1.09003 * 109.46975 * 57.64967 * 1 2 3 25 25 H 1.08999 * 109.47301 * 177.65281 * 1 2 3 26 26 H 1.09000 * 110.32213 * 336.27088 * 4 2 1 27 27 H 1.09004 * 110.32323 * 98.37111 * 4 2 1 28 28 H 1.00897 * 110.99833 * 180.02562 * 7 5 4 29 29 H 1.00910 * 110.99640 * 303.95333 * 7 5 4 30 30 H 1.08996 * 110.40505 * 265.07372 * 8 5 4 31 31 H 1.08992 * 110.41287 * 142.63152 * 8 5 4 32 32 H 1.08993 * 109.47164 * 289.99919 * 10 9 2 33 33 H 1.08996 * 109.46920 * 49.99953 * 10 9 2 34 34 H 0.97001 * 120.00106 * 359.97438 * 13 11 10 35 35 H 1.09008 * 109.47033 * 300.00175 * 14 13 11 36 36 H 1.09005 * 109.47366 * 59.99240 * 14 13 11 37 37 H 0.97001 * 120.00440 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0685 -0.7770 -1.2205 5 6 3.3178 -1.5197 -0.7036 6 1 3.1861 -2.5971 -0.8035 7 7 4.5121 -1.0821 -1.4386 8 6 3.4287 -1.1295 0.7860 9 7 2.0481 -0.7450 1.1762 10 6 2.0569 0.1041 2.3751 11 6 2.3503 -0.7416 3.5874 12 8 2.5344 -1.9341 3.4649 13 7 2.4080 -0.1727 4.8079 14 6 2.6937 -0.9947 5.9864 15 6 2.7026 -0.1238 7.2162 16 1 2.5146 0.9361 7.1286 17 6 2.9507 -0.6800 8.4531 18 7 3.1801 -1.9706 8.5598 19 14 2.9624 0.3997 9.9774 20 1 2.6791 1.8052 9.5906 21 1 1.9215 -0.0716 10.9259 22 1 4.2953 0.3238 10.6276 23 1 -0.3633 0.4770 0.9103 24 1 -0.3633 0.5499 -0.8682 25 1 -0.3634 -1.0268 -0.0421 26 1 1.3236 -1.4898 -1.5742 27 1 2.3400 -0.0866 -2.0191 28 1 5.3358 -1.5623 -1.1086 29 1 4.3925 -1.2109 -2.4323 30 1 4.1068 -0.2849 0.9081 31 1 3.7686 -1.9796 1.3774 32 1 2.8251 0.8703 2.2720 33 1 1.0829 0.5794 2.4907 34 1 2.2610 0.7811 4.9059 35 1 1.9260 -1.7616 6.0893 36 1 3.6681 -1.4694 5.8707 37 1 3.3543 -2.3620 9.4301 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702642836.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:58 Heat of formation + Delta-G solvation = -64.179813 kcal Electronic energy + Delta-G solvation = -17418.586402 eV Core-core repulsion = 14615.156188 eV Total energy + Delta-G solvation = -2803.430215 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.95086 -39.58451 -36.12405 -35.20036 -34.33084 -32.77572 -30.42713 -29.28308 -27.27587 -25.99515 -24.31651 -21.78028 -21.24400 -21.06198 -18.94042 -17.57466 -17.34069 -17.00454 -16.51558 -16.40945 -16.14352 -15.73548 -15.36899 -14.80668 -14.58790 -14.14258 -13.90773 -13.73857 -13.42771 -13.00739 -12.90657 -12.76802 -12.64124 -12.29390 -12.22601 -12.05246 -11.84514 -11.70640 -11.45885 -10.81698 -10.70172 -9.81694 -9.70228 -9.43741 -8.29573 -6.46408 1.43013 1.44340 1.57904 1.80161 2.27039 2.46299 3.03544 3.05373 3.55470 3.68724 3.74628 4.03186 4.09744 4.26134 4.28555 4.37006 4.52131 4.57987 4.80224 4.84422 4.95221 5.03499 5.04814 5.11281 5.19120 5.23634 5.40731 5.49309 5.69058 5.82182 5.84971 5.97379 6.22888 6.57471 6.65207 6.95332 7.23474 7.53613 8.83018 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.045044 B = 0.004331 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.469082 B = 6463.585147 C = 6752.020462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.059 3.941 3 H 0.064 0.936 4 C -0.106 4.106 5 C 0.089 3.911 6 H 0.039 0.961 7 N -0.844 5.844 8 C 0.043 3.957 9 N -0.509 5.509 10 C 0.039 3.961 11 C 0.495 3.505 12 O -0.586 6.586 13 N -0.711 5.711 14 C 0.268 3.732 15 C -0.555 4.555 16 H 0.085 0.915 17 C 0.003 3.997 18 N -0.932 5.932 19 Si 0.986 3.014 20 H -0.252 1.252 21 H -0.279 1.279 22 H -0.279 1.279 23 H 0.053 0.947 24 H 0.082 0.918 25 H 0.052 0.948 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.346 0.654 29 H 0.354 0.646 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.126 0.874 34 H 0.408 0.592 35 H -0.015 1.015 36 H -0.015 1.015 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.397 8.068 -19.735 21.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.049 4.049 3 H 0.082 0.918 4 C -0.145 4.145 5 C -0.023 4.023 6 H 0.057 0.943 7 N -0.376 5.376 8 C -0.086 4.086 9 N -0.234 5.234 10 C -0.092 4.092 11 C 0.282 3.718 12 O -0.467 6.467 13 N -0.362 5.362 14 C 0.145 3.855 15 C -0.593 4.593 16 H 0.103 0.897 17 C -0.197 4.197 18 N -0.571 5.571 19 Si 0.809 3.191 20 H -0.176 1.176 21 H -0.204 1.204 22 H -0.204 1.204 23 H 0.073 0.927 24 H 0.101 0.899 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.112 0.888 28 H 0.159 0.841 29 H 0.169 0.831 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.144 0.856 34 H 0.243 0.757 35 H 0.003 0.997 36 H 0.003 0.997 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.729 7.343 -19.263 20.795 hybrid contribution 0.767 -0.209 0.841 1.158 sum -1.962 7.134 -18.421 19.851 Atomic orbital electron populations 1.21746 0.92771 1.02262 1.02461 1.22760 0.96790 0.96212 0.89091 0.91793 1.22421 0.95595 0.99330 0.97115 1.21932 0.91535 0.96807 0.92073 0.94302 1.58799 1.04371 1.65368 1.09061 1.23053 0.89846 1.00011 0.95649 1.65035 1.18775 1.37191 1.02394 1.22111 1.04876 0.93880 0.88369 1.21330 0.76461 0.88650 0.85367 1.90621 1.51388 1.17930 1.86727 1.46185 1.70694 1.12664 1.06611 1.18505 0.93203 0.90793 0.82971 1.21658 1.50291 0.95687 0.91650 0.89744 1.26089 0.93860 0.96540 1.03174 1.70152 1.47935 1.13080 1.25929 0.85091 0.77742 0.78925 0.77325 1.17552 1.20426 1.20441 0.92747 0.89890 0.92907 0.90283 0.88808 0.84104 0.83124 0.93227 0.92976 0.89756 0.85633 0.75683 0.99692 0.99739 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 9.36 71.98 0.67 -1.72 16 2 C 0.06 1.21 2.88 45.06 0.13 1.34 16 3 H 0.06 1.20 7.99 -2.39 -0.02 1.18 16 4 C -0.11 -1.91 6.29 31.49 0.20 -1.71 16 5 C 0.09 1.93 4.19 45.81 0.19 2.13 16 6 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 7 N -0.84 -14.49 9.16 -164.97 -1.51 -16.00 16 8 C 0.04 1.26 5.64 86.46 0.49 1.74 16 9 N -0.51 -14.73 4.66 -861.31 -4.01 -18.74 16 10 C 0.04 1.13 5.27 85.56 0.45 1.58 16 11 C 0.50 20.73 7.68 87.66 0.67 21.40 16 12 O -0.59 -30.45 15.22 -3.04 -0.05 -30.50 16 13 N -0.71 -30.95 5.55 -466.78 -2.59 -33.54 16 14 C 0.27 15.13 5.43 85.63 0.46 15.59 16 15 C -0.56 -30.67 9.28 25.60 0.24 -30.43 16 16 H 0.08 4.21 7.60 -2.91 -0.02 4.18 16 17 C 0.00 0.16 5.46 84.65 0.46 0.62 16 18 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 19 Si 0.99 42.69 29.54 68.60 2.03 44.72 16 20 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 21 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 23 H 0.05 0.99 7.28 -2.39 -0.02 0.97 16 24 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.05 1.07 8.09 -2.39 -0.02 1.05 16 26 H 0.08 1.33 7.82 -2.39 -0.02 1.31 16 27 H 0.09 1.36 7.95 -2.38 -0.02 1.35 16 28 H 0.35 5.65 9.08 -89.70 -0.81 4.83 16 29 H 0.35 4.38 9.01 -89.69 -0.81 3.58 16 30 H 0.05 1.43 7.67 -2.39 -0.02 1.41 16 31 H 0.05 1.91 7.23 -2.39 -0.02 1.89 16 32 H 0.08 2.08 7.77 -2.39 -0.02 2.06 16 33 H 0.13 2.96 7.16 -2.39 -0.02 2.95 16 34 H 0.41 14.52 8.32 -92.71 -0.77 13.75 16 35 H -0.01 -0.95 8.14 -2.38 -0.02 -0.97 16 36 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 37 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -73.77 304.03 -3.19 -76.96 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: -1.31 Total: 23.36 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 3.97 Total: 10.53 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -7.83 Total: -125.07 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.05 Total: -30.50 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -73.77 -3.19 -76.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702642836.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.775 kcal (2) G-P(sol) polarization free energy of solvation -73.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds