Wall clock time and date at job start Mon Mar 30 2020 04:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00475 * 2 1 4 4 H 1.48491 * 109.47630 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46673 * 300.00440 * 3 2 1 6 6 H 1.48503 * 109.46726 * 59.99662 * 3 2 1 7 7 C 1.37878 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00367 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00060 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47227 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47163 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46905 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.46717 * 179.97438 * 12 11 10 14 14 C 1.46903 * 110.99872 * 66.04595 * 13 12 11 15 15 C 1.52999 * 109.47363 * 53.80167 * 14 13 12 16 16 O 1.42901 * 109.46884 * 67.23173 * 15 14 13 17 17 C 1.46897 * 111.00056 * 189.99615 * 13 12 11 18 18 C 1.53002 * 109.47250 * 174.20218 * 17 13 12 19 19 C 1.53006 * 117.49782 * 244.61445 * 18 17 13 20 20 C 1.52996 * 59.99897 * 252.51060 * 19 18 17 21 21 H 0.97000 * 119.99491 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47057 * 60.00189 * 9 7 2 23 23 H 1.09002 * 109.47413 * 300.00153 * 9 7 2 24 24 H 1.08996 * 109.47045 * 60.00063 * 10 9 7 25 25 H 1.09001 * 109.47420 * 300.00064 * 10 9 7 26 26 H 1.08996 * 109.47372 * 59.99916 * 11 10 9 27 27 H 1.09001 * 109.46722 * 300.00145 * 11 10 9 28 28 H 1.08992 * 109.46850 * 299.99782 * 12 11 10 29 29 H 1.09000 * 109.47084 * 60.00115 * 12 11 10 30 30 H 1.09008 * 109.46818 * 173.80457 * 14 13 12 31 31 H 1.08997 * 109.47119 * 293.79757 * 14 13 12 32 32 H 1.08998 * 109.46850 * 187.23278 * 15 14 13 33 33 H 1.08995 * 109.47160 * 307.23688 * 15 14 13 34 34 H 0.96699 * 114.00200 * 179.97438 * 16 15 14 35 35 H 1.08999 * 109.47513 * 294.20495 * 17 13 12 36 36 H 1.09000 * 109.46902 * 54.20541 * 17 13 12 37 37 H 1.09000 * 115.54915 * 30.32098 * 18 17 13 38 38 H 1.09004 * 117.49593 * 0.02562 * 19 18 17 39 39 H 1.09001 * 117.49763 * 145.01832 * 19 18 17 40 40 H 1.09000 * 117.50174 * 252.50883 * 20 19 18 41 41 H 1.09004 * 117.49559 * 107.49019 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4745 -6.1501 -0.0005 13 7 1.7399 -7.4222 -0.0005 14 6 0.9949 -7.5999 -1.2541 15 6 1.9482 -7.4430 -2.4405 16 8 2.8792 -8.5271 -2.4501 17 6 2.6462 -8.5534 0.2381 18 6 1.8303 -9.8405 0.3750 19 6 1.8559 -10.5525 1.7290 20 6 2.6016 -11.1521 0.5352 21 1 -0.4849 0.8401 -0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 2.8718 -3.6044 0.8894 25 1 2.8719 -3.6044 -0.8905 26 1 0.8538 -5.0447 -0.8913 27 1 0.8532 -5.0451 0.8886 28 1 3.1017 -6.0922 -0.8900 29 1 3.1004 -6.0924 0.8899 30 1 0.5501 -8.5949 -1.2745 31 1 0.2078 -6.8488 -1.3186 32 1 1.3767 -7.4466 -3.3687 33 1 2.4886 -6.5008 -2.3502 34 1 3.5155 -8.4927 -3.1774 35 1 3.3371 -8.6485 -0.5995 36 1 3.2090 -8.3807 1.1555 37 1 0.8998 -9.8698 -0.1919 38 1 2.4536 -10.1037 2.5224 39 1 0.9420 -11.0503 2.0532 40 1 2.1784 -12.0444 0.0739 41 1 3.6903 -11.0981 0.5431 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706670942.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:19 Heat of formation + Delta-G solvation = -36.495746 kcal Electronic energy + Delta-G solvation = -17520.227971 eV Core-core repulsion = 14821.538571 eV Total energy + Delta-G solvation = -2698.689400 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.19085 -36.94424 -35.84996 -34.09857 -32.13963 -29.35558 -28.80830 -25.73301 -24.23883 -22.86460 -22.38729 -20.61859 -19.89798 -19.51030 -17.69644 -16.56474 -16.20791 -15.90384 -15.17610 -14.42008 -14.29259 -13.96655 -13.81130 -13.34609 -12.82036 -12.49994 -12.29395 -12.11425 -11.65259 -11.59601 -11.53845 -11.31242 -10.97207 -10.84953 -10.56280 -10.45895 -10.34327 -10.28731 -10.15741 -9.70312 -9.56713 -9.22808 -8.96761 -8.31723 -7.99412 -5.96610 -3.98642 3.32383 3.39709 3.43999 3.72286 4.05332 4.26275 4.48798 4.70547 4.93777 5.00887 5.06721 5.16775 5.29147 5.38981 5.41976 5.48215 5.50597 5.57247 5.64169 5.82517 5.85206 5.98400 6.03100 6.05869 6.15550 6.20743 6.25832 6.37494 6.57017 6.85862 7.01470 7.15774 7.24436 7.35314 7.46248 7.73139 7.89146 8.04898 8.47863 9.09196 9.65193 11.14762 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.042056 B = 0.003787 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.617825 B = 7392.868150 C = 7622.268100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.113 4.113 12 C 0.051 3.949 13 N -0.531 5.531 14 C 0.050 3.950 15 C 0.030 3.970 16 O -0.563 6.563 17 C 0.074 3.926 18 C -0.132 4.132 19 C -0.183 4.183 20 C -0.182 4.182 21 H 0.259 0.741 22 H 0.014 0.986 23 H 0.016 0.984 24 H 0.046 0.954 25 H 0.043 0.957 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.036 0.964 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.369 0.631 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.599 -19.974 -2.853 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.151 4.151 12 C -0.077 4.077 13 N -0.253 5.253 14 C -0.079 4.079 15 C -0.049 4.049 16 O -0.369 6.369 17 C -0.053 4.053 18 C -0.150 4.150 19 C -0.220 4.220 20 C -0.220 4.220 21 H 0.069 0.931 22 H 0.032 0.968 23 H 0.034 0.966 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.216 0.784 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.771 -20.010 -1.915 20.452 hybrid contribution 1.228 1.162 -1.189 2.067 sum 4.999 -18.848 -3.104 19.745 Atomic orbital electron populations 1.69979 1.06035 1.26376 1.51152 1.25036 0.94844 0.99224 0.95465 0.86563 0.80123 0.83926 0.77551 1.19779 1.21069 1.21017 1.21334 0.93041 0.91229 1.50139 0.92751 1.19090 0.94026 0.91343 0.97134 1.21597 0.99071 0.94089 0.99963 1.21661 0.97898 0.93588 1.01974 1.22307 0.96160 0.88671 1.00521 1.62189 1.28124 1.02168 1.32837 1.22401 0.96063 1.03099 0.86296 1.23090 0.92175 0.90039 0.99578 1.86592 1.47788 1.49088 1.53416 1.21933 0.93986 0.88188 1.01224 1.22228 1.00962 0.92258 0.99541 1.23010 1.02357 1.04585 0.92005 1.22893 0.99038 0.97049 1.02973 0.93123 0.96782 0.96596 0.93485 0.93856 0.92766 0.91671 0.94619 0.91248 0.90128 0.88910 0.93590 0.92421 0.78429 0.90970 0.91877 0.87855 0.89023 0.89292 0.89282 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 11 C -0.11 -1.97 5.14 -26.73 -0.14 -2.10 16 12 C 0.05 0.74 4.60 -3.82 -0.02 0.73 16 13 N -0.53 -7.20 4.74 -234.63 -1.11 -8.32 16 14 C 0.05 0.61 5.39 -3.82 -0.02 0.59 16 15 C 0.03 0.33 6.80 37.16 0.25 0.59 16 16 O -0.56 -5.81 10.53 -35.23 -0.37 -6.18 16 17 C 0.07 0.91 4.85 -3.82 -0.02 0.90 16 18 C -0.13 -1.48 5.64 -90.62 -0.51 -1.99 16 19 C -0.18 -1.86 10.18 -26.73 -0.27 -2.13 16 20 C -0.18 -1.76 10.25 -26.73 -0.27 -2.04 16 21 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 22 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.05 0.92 6.69 -51.93 -0.35 0.58 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.04 0.51 5.71 -51.93 -0.30 0.22 16 29 H 0.07 1.03 7.99 -51.93 -0.41 0.61 16 30 H 0.08 0.94 5.81 -51.92 -0.30 0.64 16 31 H 0.09 1.16 6.78 -51.93 -0.35 0.81 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.70 5.78 -51.93 -0.30 0.40 16 34 H 0.37 2.40 9.12 45.56 0.42 2.82 16 35 H 0.07 0.92 5.21 -51.93 -0.27 0.65 16 36 H 0.06 0.79 7.75 -51.93 -0.40 0.39 16 37 H 0.10 1.21 6.06 -51.93 -0.31 0.89 16 38 H 0.09 0.93 8.03 -51.93 -0.42 0.51 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 321.22 15.07 4.84 4.84 Total: -1.00 -31.15 321.22 -8.96 -40.11 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.35 Total: 0.50 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -1.69 Total: -21.24 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: -0.38 Total: -34.92 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.37 Total: -6.18 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.15 -8.96 -40.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706670942.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.619 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds