Wall clock time and date at job start Mon Mar 30 2020 04:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00475 * 2 1 4 4 H 1.48491 * 109.47630 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46673 * 300.00440 * 3 2 1 6 6 H 1.48503 * 109.46726 * 59.99662 * 3 2 1 7 7 C 1.37878 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00367 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00060 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47227 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47163 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46905 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.46717 * 179.97438 * 12 11 10 14 14 C 1.46903 * 110.99872 * 66.04595 * 13 12 11 15 15 C 1.52999 * 109.47363 * 53.80167 * 14 13 12 16 16 O 1.42901 * 109.46884 * 67.23173 * 15 14 13 17 17 C 1.46897 * 111.00056 * 189.99615 * 13 12 11 18 18 C 1.53002 * 109.47250 * 174.20218 * 17 13 12 19 19 C 1.53006 * 117.49782 * 244.61445 * 18 17 13 20 20 C 1.52996 * 59.99897 * 252.51060 * 19 18 17 21 21 H 0.97000 * 119.99491 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47057 * 60.00189 * 9 7 2 23 23 H 1.09002 * 109.47413 * 300.00153 * 9 7 2 24 24 H 1.08996 * 109.47045 * 60.00063 * 10 9 7 25 25 H 1.09001 * 109.47420 * 300.00064 * 10 9 7 26 26 H 1.08996 * 109.47372 * 59.99916 * 11 10 9 27 27 H 1.09001 * 109.46722 * 300.00145 * 11 10 9 28 28 H 1.08992 * 109.46850 * 299.99782 * 12 11 10 29 29 H 1.09000 * 109.47084 * 60.00115 * 12 11 10 30 30 H 1.09008 * 109.46818 * 173.80457 * 14 13 12 31 31 H 1.08997 * 109.47119 * 293.79757 * 14 13 12 32 32 H 1.08998 * 109.46850 * 187.23278 * 15 14 13 33 33 H 1.08995 * 109.47160 * 307.23688 * 15 14 13 34 34 H 0.96699 * 114.00200 * 179.97438 * 16 15 14 35 35 H 1.08999 * 109.47513 * 294.20495 * 17 13 12 36 36 H 1.09000 * 109.46902 * 54.20541 * 17 13 12 37 37 H 1.09000 * 115.54915 * 30.32098 * 18 17 13 38 38 H 1.09004 * 117.49593 * 0.02562 * 19 18 17 39 39 H 1.09001 * 117.49763 * 145.01832 * 19 18 17 40 40 H 1.09000 * 117.50174 * 252.50883 * 20 19 18 41 41 H 1.09004 * 117.49559 * 107.49019 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4745 -6.1501 -0.0005 13 7 1.7399 -7.4222 -0.0005 14 6 0.9949 -7.5999 -1.2541 15 6 1.9482 -7.4430 -2.4405 16 8 2.8792 -8.5271 -2.4501 17 6 2.6462 -8.5534 0.2381 18 6 1.8303 -9.8405 0.3750 19 6 1.8559 -10.5525 1.7290 20 6 2.6016 -11.1521 0.5352 21 1 -0.4849 0.8401 -0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 2.8718 -3.6044 0.8894 25 1 2.8719 -3.6044 -0.8905 26 1 0.8538 -5.0447 -0.8913 27 1 0.8532 -5.0451 0.8886 28 1 3.1017 -6.0922 -0.8900 29 1 3.1004 -6.0924 0.8899 30 1 0.5501 -8.5949 -1.2745 31 1 0.2078 -6.8488 -1.3186 32 1 1.3767 -7.4466 -3.3687 33 1 2.4886 -6.5008 -2.3502 34 1 3.5155 -8.4927 -3.1774 35 1 3.3371 -8.6485 -0.5995 36 1 3.2090 -8.3807 1.1555 37 1 0.8998 -9.8698 -0.1919 38 1 2.4536 -10.1037 2.5224 39 1 0.9420 -11.0503 2.0532 40 1 2.1784 -12.0444 0.0739 41 1 3.6903 -11.0981 0.5431 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706670942.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:19 Heat of formation + Delta-G solvation = -57.211267 kcal Electronic energy + Delta-G solvation = -17521.126263 eV Core-core repulsion = 14821.538571 eV Total energy + Delta-G solvation = -2699.587692 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.17338 -37.78342 -36.99731 -35.78079 -34.04437 -30.60998 -30.17809 -27.29914 -25.47058 -24.31202 -23.15603 -22.15006 -21.31214 -20.48690 -18.52442 -18.41044 -17.58621 -16.86292 -16.53890 -16.07454 -15.81270 -14.98189 -14.67987 -14.47894 -14.24430 -13.89763 -13.83049 -13.45941 -13.08755 -13.01117 -12.82572 -12.39301 -12.35257 -12.27942 -12.20708 -11.93062 -11.82715 -11.34298 -11.27614 -11.19506 -11.02311 -10.86059 -10.55490 -10.55242 -9.01854 -8.19516 -6.30840 1.39738 1.40199 1.53698 2.41110 2.82119 3.13267 3.17310 3.43765 3.83639 4.03255 4.12579 4.14868 4.20452 4.25556 4.34036 4.48523 4.51372 4.59655 4.61018 4.72079 4.81912 4.85037 4.88954 4.98601 5.08085 5.11692 5.20396 5.26355 5.29068 5.31723 5.38011 5.43984 5.56769 5.78929 5.87827 6.20013 6.24960 6.28233 6.85109 6.86955 7.38494 8.92539 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.042056 B = 0.003787 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.617825 B = 7392.868150 C = 7622.268100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.024 3.976 10 C -0.096 4.096 11 C -0.101 4.101 12 C 0.062 3.938 13 N -0.541 5.541 14 C 0.046 3.954 15 C 0.037 3.963 16 O -0.572 6.572 17 C 0.078 3.922 18 C -0.145 4.145 19 C -0.184 4.184 20 C -0.170 4.170 21 H 0.263 0.737 22 H -0.009 1.009 23 H -0.012 1.012 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.387 0.613 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.950 -20.598 -3.257 21.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.134 4.134 11 C -0.139 4.139 12 C -0.066 4.066 13 N -0.264 5.264 14 C -0.082 4.082 15 C -0.042 4.042 16 O -0.380 6.380 17 C -0.049 4.049 18 C -0.163 4.163 19 C -0.221 4.221 20 C -0.207 4.207 21 H 0.072 0.928 22 H 0.009 0.991 23 H 0.006 0.994 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.236 0.764 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.139 -20.655 -2.329 21.412 hybrid contribution 0.771 1.314 -1.071 1.862 sum 5.910 -19.341 -3.401 20.508 Atomic orbital electron populations 1.70111 1.07836 1.27674 1.51836 1.26016 0.95798 1.03453 0.94778 0.85387 0.79079 0.78695 0.77809 1.18539 1.20281 1.20376 1.21773 0.93552 0.92526 1.50296 0.92230 1.19013 0.94481 0.93238 0.94608 1.21398 0.97962 0.93708 1.00352 1.21469 0.97973 0.93057 1.01408 1.22084 0.95271 0.88328 1.00897 1.62136 1.28365 1.02005 1.33876 1.22418 0.96137 1.03213 0.86407 1.22916 0.92094 0.89686 0.99488 1.86534 1.48169 1.48613 1.54654 1.21897 0.93881 0.88137 1.00936 1.22170 1.01096 0.92507 1.00551 1.23070 1.02839 1.04428 0.91780 1.22954 0.99256 0.96447 1.02059 0.92793 0.99107 0.99369 0.93269 0.93108 0.92677 0.92948 0.93873 0.91250 0.89487 0.89691 0.92250 0.93527 0.76379 0.91030 0.92297 0.88369 0.89116 0.88609 0.88157 0.88682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.87 13.29 21.45 0.28 -57.58 16 2 C 0.00 -0.18 5.46 84.66 0.46 0.29 16 3 Si 0.97 44.80 29.54 68.60 2.03 46.82 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 7 C -0.54 -31.63 9.11 25.60 0.23 -31.40 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.02 1.28 4.97 29.85 0.15 1.43 16 10 C -0.10 -4.01 5.15 30.60 0.16 -3.85 16 11 C -0.10 -3.51 5.14 30.60 0.16 -3.36 16 12 C 0.06 1.76 4.60 86.30 0.40 2.16 16 13 N -0.54 -14.23 4.74 -896.22 -4.25 -18.48 16 14 C 0.05 1.09 5.39 86.30 0.47 1.56 16 15 C 0.04 0.77 6.80 71.98 0.49 1.26 16 16 O -0.57 -10.63 10.53 -148.98 -1.57 -12.20 16 17 C 0.08 1.84 4.85 86.30 0.42 2.26 16 18 C -0.14 -3.05 5.64 -10.79 -0.06 -3.11 16 19 C -0.18 -3.47 10.18 30.60 0.31 -3.16 16 20 C -0.17 -2.94 10.25 30.59 0.31 -2.63 16 21 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 22 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 23 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 24 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.05 1.89 6.69 -2.39 -0.02 1.88 16 27 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.04 1.18 5.71 -2.39 -0.01 1.17 16 29 H 0.07 1.98 7.99 -2.39 -0.02 1.96 16 30 H 0.09 1.93 5.81 -2.38 -0.01 1.92 16 31 H 0.08 2.10 6.78 -2.39 -0.02 2.09 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.05 1.06 5.78 -2.39 -0.01 1.05 16 34 H 0.39 4.15 9.12 -74.06 -0.68 3.48 16 35 H 0.07 1.70 5.21 -2.39 -0.01 1.69 16 36 H 0.06 1.41 7.75 -2.39 -0.02 1.39 16 37 H 0.10 2.17 6.06 -2.39 -0.01 2.16 16 38 H 0.09 1.72 8.03 -2.39 -0.02 1.70 16 39 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -66.17 321.22 0.30 -65.86 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.32 Total: 14.13 kcal Atomic # 6 Polarization: -42.04 SS G_CDS: 3.49 Total: -38.55 kcal Atomic # 7 Polarization: -72.09 SS G_CDS: -3.97 Total: -76.06 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -1.57 Total: -12.20 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -66.17 0.30 -65.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706670942.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.652 kcal (2) G-P(sol) polarization free energy of solvation -66.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds