Wall clock time and date at job start Mon Mar 30 2020 03:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.36564 * 2 1 4 4 C 1.54378 * 110.32154 * 237.82144 * 2 1 3 5 5 N 1.48561 * 104.59513 * 217.24900 * 4 2 1 6 6 C 1.46901 * 111.00109 * 159.03627 * 5 4 2 7 7 C 1.50701 * 109.46921 * 54.58315 * 6 5 4 8 8 O 1.21294 * 119.99849 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.37101 * 119.99707 * 180.02562 * 9 7 6 11 11 H 1.08002 * 119.99704 * 359.97438 * 10 9 7 12 12 C 1.38941 * 119.99927 * 180.02562 * 10 9 7 13 13 N 1.31418 * 120.00215 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 120.00009 * 359.97438 * 12 10 9 15 15 H 1.48494 * 109.47177 * 89.99959 * 14 12 10 16 16 H 1.48505 * 109.47036 * 210.00243 * 14 12 10 17 17 H 1.48499 * 109.46776 * 329.99732 * 14 12 10 18 18 C 1.48562 * 104.22110 * 39.48429 * 5 4 2 19 19 C 1.54259 * 110.32423 * 122.18458 * 2 1 3 20 20 H 1.09001 * 110.32022 * 237.78970 * 19 2 1 21 21 C 1.52997 * 110.41044 * 359.94972 * 19 2 1 22 22 N 1.46897 * 109.47114 * 182.14348 * 21 19 2 23 23 H 1.09007 * 109.47382 * 297.81905 * 1 2 3 24 24 H 1.09003 * 109.47767 * 57.81376 * 1 2 3 25 25 H 1.08996 * 109.47312 * 177.82196 * 1 2 3 26 26 H 1.09004 * 110.41586 * 98.47114 * 4 2 1 27 27 H 1.09000 * 110.41455 * 336.03049 * 4 2 1 28 28 H 1.09002 * 109.47401 * 294.58343 * 6 5 4 29 29 H 1.09001 * 109.46874 * 174.58355 * 6 5 4 30 30 H 0.96995 * 120.00011 * 0.02562 * 9 7 6 31 31 H 0.96996 * 119.99520 * 179.97438 * 13 12 10 32 32 H 1.08997 * 110.41642 * 79.29355 * 18 5 4 33 33 H 1.08995 * 110.41441 * 201.73999 * 18 5 4 34 34 H 1.08996 * 109.47504 * 302.14672 * 21 19 2 35 35 H 1.09002 * 109.46912 * 62.14511 * 21 19 2 36 36 H 1.00898 * 111.00293 * 180.02562 * 22 21 19 37 37 H 1.00906 * 110.99995 * 303.95794 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0661 -0.7710 -1.2253 5 7 3.2693 -1.4828 -0.7226 6 6 3.6067 -2.6217 -1.5870 7 6 3.7554 -2.1461 -3.0092 8 8 3.5964 -0.9737 -3.2764 9 7 4.0660 -3.0234 -3.9841 10 6 4.2018 -2.5907 -5.2779 11 1 4.0594 -1.5468 -5.5159 12 6 4.5215 -3.4951 -6.2830 13 7 4.6511 -3.0804 -7.5233 14 14 4.7670 -5.3006 -5.8714 15 1 3.4698 -6.0147 -5.9836 16 1 5.7434 -5.8960 -6.8188 17 1 5.2831 -5.4263 -4.4847 18 6 2.8806 -1.9422 0.6357 19 6 2.0658 -0.7705 1.2243 20 1 2.7082 -0.1268 1.8252 21 6 0.9064 -1.3012 2.0699 22 7 1.4386 -1.9862 3.2555 23 1 -0.3634 0.4796 0.9089 24 1 -0.3635 0.5474 -0.8697 25 1 -0.3634 -1.0269 -0.0391 26 1 2.3393 -0.0778 -2.0210 27 1 1.3228 -1.4848 -1.5805 28 1 2.8121 -3.3660 -1.5340 29 1 4.5440 -3.0664 -1.2526 30 1 4.1935 -3.9609 -3.7704 31 1 4.8747 -3.7118 -8.2249 32 1 2.2648 -2.8393 0.5719 33 1 3.7670 -2.1309 1.2413 34 1 0.2750 -0.4700 2.3834 35 1 0.3171 -2.0025 1.4791 36 1 0.6919 -2.3465 3.8306 37 1 2.0783 -2.7207 2.9920 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708830758.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:48 Heat of formation + Delta-G solvation = -26.203600 kcal Electronic energy + Delta-G solvation = -17776.480029 eV Core-core repulsion = 14974.696586 eV Total energy + Delta-G solvation = -2801.783442 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.73689 -38.06184 -34.96636 -33.89200 -32.80898 -31.67063 -29.35069 -27.70219 -25.45451 -24.53802 -23.15674 -21.07631 -19.42550 -18.96795 -18.18155 -16.45908 -16.05354 -15.79544 -15.13390 -14.85035 -14.66499 -14.30497 -13.70177 -13.52727 -13.26005 -12.78069 -12.51602 -12.36487 -12.22296 -12.03217 -11.84001 -11.47475 -11.22524 -11.01327 -10.62684 -10.61736 -10.37360 -10.31752 -9.98404 -9.55456 -8.88424 -8.52287 -8.20789 -8.03000 -6.32216 -3.83619 3.01888 3.05541 3.14007 3.72043 4.06409 4.10242 4.30722 4.58525 4.70765 4.84293 5.03991 5.20615 5.23896 5.28986 5.40950 5.45785 5.55101 5.63324 5.64411 5.73451 5.87694 5.90024 5.93689 6.03146 6.15135 6.19883 6.43986 6.66707 6.90711 7.15880 7.18608 7.22430 7.57500 8.13642 8.58856 8.94027 9.41127 9.81762 10.80880 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.041563 B = 0.005167 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.520184 B = 5417.477954 C = 5793.794842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 H 0.080 0.920 4 C 0.039 3.961 5 N -0.488 5.488 6 C 0.032 3.968 7 C 0.452 3.548 8 O -0.561 6.561 9 N -0.590 5.590 10 C -0.305 4.305 11 H 0.120 0.880 12 C 0.042 3.958 13 N -0.881 5.881 14 Si 0.879 3.121 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.269 1.269 18 C 0.034 3.966 19 C -0.087 4.087 20 H 0.086 0.914 21 C 0.068 3.932 22 N -0.853 5.853 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.115 0.885 27 H 0.034 0.966 28 H 0.048 0.952 29 H 0.091 0.909 30 H 0.370 0.630 31 H 0.273 0.727 32 H 0.035 0.965 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.028 0.972 36 H 0.338 0.662 37 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.197 -1.816 17.833 19.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 H 0.099 0.901 4 C -0.088 4.088 5 N -0.211 5.211 6 C -0.100 4.100 7 C 0.237 3.763 8 O -0.444 6.444 9 N -0.229 5.229 10 C -0.433 4.433 11 H 0.138 0.862 12 C -0.161 4.161 13 N -0.521 5.521 14 Si 0.705 3.295 15 H -0.197 1.197 16 H -0.201 1.201 17 H -0.195 1.195 18 C -0.095 4.095 19 C -0.106 4.106 20 H 0.104 0.896 21 C -0.063 4.063 22 N -0.383 5.383 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.133 0.867 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.203 0.797 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.046 0.954 36 H 0.150 0.850 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.467 -0.020 17.591 18.742 hybrid contribution -0.860 -3.087 -0.344 3.223 sum -7.326 -3.107 17.247 18.994 Atomic orbital electron populations 1.21931 0.95236 1.01572 1.01627 1.21974 0.95095 1.00112 0.94286 0.90126 1.23424 0.89804 0.98166 0.97455 1.65222 1.34142 1.21043 1.00715 1.22122 1.01555 0.92901 0.93456 1.19623 0.84008 0.86893 0.85736 1.90493 1.54206 1.16875 1.82782 1.42201 1.63723 1.08746 1.08211 1.19434 1.45078 0.98235 0.80598 0.86239 1.25031 0.97556 0.98455 0.95055 1.69623 1.47327 1.35292 0.99856 0.86681 0.78967 0.85240 0.78581 1.19683 1.20107 1.19469 1.23244 0.98590 0.95947 0.91695 1.21940 0.96138 0.96841 0.95674 0.89587 1.22025 0.96080 0.97898 0.90296 1.58760 1.22226 1.35895 1.21370 0.92497 0.92448 0.92836 0.86749 0.94716 0.93448 0.89089 0.79707 0.91603 0.94684 0.90242 0.90598 0.95403 0.84998 0.84809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 7.94 37.16 0.30 -1.28 16 2 C -0.09 -1.23 3.65 -89.24 -0.33 -1.55 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.04 0.65 4.86 -2.18 -0.01 0.64 16 5 N -0.49 -8.17 5.34 -231.41 -1.23 -9.41 16 6 C 0.03 0.55 5.55 -4.97 -0.03 0.52 16 7 C 0.45 10.39 7.50 -10.98 -0.08 10.30 16 8 O -0.56 -14.92 13.24 5.55 0.07 -14.84 16 9 N -0.59 -14.18 5.09 -10.96 -0.06 -14.24 16 10 C -0.30 -8.65 10.16 -14.94 -0.15 -8.80 16 11 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 12 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 13 N -0.88 -25.78 13.96 55.50 0.77 -25.01 16 14 Si 0.88 19.42 27.74 -169.99 -4.71 14.70 16 15 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 16 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 18 C 0.03 0.43 5.19 -2.18 -0.01 0.42 16 19 C -0.09 -1.01 3.31 -89.24 -0.30 -1.31 16 20 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 21 C 0.07 0.65 4.98 -3.83 -0.02 0.63 16 22 N -0.85 -7.38 9.62 -10.37 -0.10 -7.48 16 23 H 0.06 0.52 6.75 -51.93 -0.35 0.17 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.57 6.82 -51.93 -0.35 0.21 16 26 H 0.11 2.33 6.05 -51.93 -0.31 2.01 16 27 H 0.03 0.59 7.68 -51.93 -0.40 0.19 16 28 H 0.05 0.74 7.88 -51.93 -0.41 0.33 16 29 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.37 7.84 5.76 -40.82 -0.24 7.60 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.03 0.42 7.48 -51.93 -0.39 0.03 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 0.70 6.67 -51.93 -0.35 0.35 16 35 H 0.03 0.27 6.84 -51.93 -0.36 -0.08 16 36 H 0.34 2.31 9.08 -39.29 -0.36 1.95 16 37 H 0.34 2.76 8.19 -39.29 -0.32 2.43 16 LS Contribution 289.95 15.07 4.37 4.37 Total: -1.00 -31.67 289.95 -7.11 -38.78 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -5.50 Total: 12.49 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -0.72 Total: 0.64 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.62 Total: -56.13 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.07 Total: -14.84 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.71 Total: 14.70 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.67 -7.11 -38.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708830758.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.577 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds