Wall clock time and date at job start Mon Mar 30 2020 03:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.36564 * 2 1 4 4 C 1.54378 * 110.32154 * 237.82144 * 2 1 3 5 5 N 1.48561 * 104.59513 * 217.24900 * 4 2 1 6 6 C 1.46901 * 111.00109 * 159.03627 * 5 4 2 7 7 C 1.50701 * 109.46921 * 54.58315 * 6 5 4 8 8 O 1.21294 * 119.99849 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.37101 * 119.99707 * 180.02562 * 9 7 6 11 11 H 1.08002 * 119.99704 * 359.97438 * 10 9 7 12 12 C 1.38941 * 119.99927 * 180.02562 * 10 9 7 13 13 N 1.31418 * 120.00215 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 120.00009 * 359.97438 * 12 10 9 15 15 H 1.48494 * 109.47177 * 89.99959 * 14 12 10 16 16 H 1.48505 * 109.47036 * 210.00243 * 14 12 10 17 17 H 1.48499 * 109.46776 * 329.99732 * 14 12 10 18 18 C 1.48562 * 104.22110 * 39.48429 * 5 4 2 19 19 C 1.54259 * 110.32423 * 122.18458 * 2 1 3 20 20 H 1.09001 * 110.32022 * 237.78970 * 19 2 1 21 21 C 1.52997 * 110.41044 * 359.94972 * 19 2 1 22 22 N 1.46897 * 109.47114 * 182.14348 * 21 19 2 23 23 H 1.09007 * 109.47382 * 297.81905 * 1 2 3 24 24 H 1.09003 * 109.47767 * 57.81376 * 1 2 3 25 25 H 1.08996 * 109.47312 * 177.82196 * 1 2 3 26 26 H 1.09004 * 110.41586 * 98.47114 * 4 2 1 27 27 H 1.09000 * 110.41455 * 336.03049 * 4 2 1 28 28 H 1.09002 * 109.47401 * 294.58343 * 6 5 4 29 29 H 1.09001 * 109.46874 * 174.58355 * 6 5 4 30 30 H 0.96995 * 120.00011 * 0.02562 * 9 7 6 31 31 H 0.96996 * 119.99520 * 179.97438 * 13 12 10 32 32 H 1.08997 * 110.41642 * 79.29355 * 18 5 4 33 33 H 1.08995 * 110.41441 * 201.73999 * 18 5 4 34 34 H 1.08996 * 109.47504 * 302.14672 * 21 19 2 35 35 H 1.09002 * 109.46912 * 62.14511 * 21 19 2 36 36 H 1.00898 * 111.00293 * 180.02562 * 22 21 19 37 37 H 1.00906 * 110.99995 * 303.95794 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0661 -0.7710 -1.2253 5 7 3.2693 -1.4828 -0.7226 6 6 3.6067 -2.6217 -1.5870 7 6 3.7554 -2.1461 -3.0092 8 8 3.5964 -0.9737 -3.2764 9 7 4.0660 -3.0234 -3.9841 10 6 4.2018 -2.5907 -5.2779 11 1 4.0594 -1.5468 -5.5159 12 6 4.5215 -3.4951 -6.2830 13 7 4.6511 -3.0804 -7.5233 14 14 4.7670 -5.3006 -5.8714 15 1 3.4698 -6.0147 -5.9836 16 1 5.7434 -5.8960 -6.8188 17 1 5.2831 -5.4263 -4.4847 18 6 2.8806 -1.9422 0.6357 19 6 2.0658 -0.7705 1.2243 20 1 2.7082 -0.1268 1.8252 21 6 0.9064 -1.3012 2.0699 22 7 1.4386 -1.9862 3.2555 23 1 -0.3634 0.4796 0.9089 24 1 -0.3635 0.5474 -0.8697 25 1 -0.3634 -1.0269 -0.0391 26 1 2.3393 -0.0778 -2.0210 27 1 1.3228 -1.4848 -1.5805 28 1 2.8121 -3.3660 -1.5340 29 1 4.5440 -3.0664 -1.2526 30 1 4.1935 -3.9609 -3.7704 31 1 4.8747 -3.7118 -8.2249 32 1 2.2648 -2.8393 0.5719 33 1 3.7670 -2.1309 1.2413 34 1 0.2750 -0.4700 2.3834 35 1 0.3171 -2.0025 1.4791 36 1 0.6919 -2.3465 3.8306 37 1 2.0783 -2.7207 2.9920 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708830758.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:48 Heat of formation + Delta-G solvation = -53.687261 kcal Electronic energy + Delta-G solvation = -17777.671810 eV Core-core repulsion = 14974.696586 eV Total energy + Delta-G solvation = -2802.975223 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.05579 -39.69271 -36.29120 -35.60598 -33.92242 -33.65185 -30.44106 -29.03510 -26.92375 -25.82372 -24.36154 -22.28795 -21.33076 -20.29973 -19.81281 -17.71461 -17.36734 -16.95626 -16.69497 -16.33342 -15.89693 -15.56483 -15.04991 -14.89689 -14.62240 -14.43980 -14.02507 -13.60784 -13.36738 -13.17187 -13.04146 -12.99378 -12.59690 -12.42068 -12.20058 -11.99668 -11.59847 -11.53220 -11.38375 -11.32467 -10.32661 -10.24843 -9.52918 -9.38937 -8.43318 -6.04435 1.28685 1.33396 1.42963 1.91042 2.21167 2.66439 3.12460 3.19002 3.58351 3.60299 3.84747 4.05865 4.18185 4.24863 4.31515 4.41425 4.48430 4.50358 4.58610 4.64816 4.75707 4.79764 4.91873 5.04157 5.21512 5.27879 5.36477 5.44468 5.51126 5.87365 5.90399 6.05317 6.29187 6.57129 6.65170 6.85805 7.36159 7.93288 8.74336 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.041563 B = 0.005167 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.520184 B = 5417.477954 C = 5793.794842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 H 0.071 0.929 4 C 0.041 3.959 5 N -0.512 5.512 6 C 0.043 3.957 7 C 0.448 3.552 8 O -0.606 6.606 9 N -0.590 5.590 10 C -0.329 4.329 11 H 0.055 0.945 12 C -0.014 4.014 13 N -0.934 5.934 14 Si 0.964 3.036 15 H -0.256 1.256 16 H -0.274 1.274 17 H -0.232 1.232 18 C 0.038 3.962 19 C -0.079 4.079 20 H 0.080 0.920 21 C 0.075 3.925 22 N -0.858 5.858 23 H 0.079 0.921 24 H 0.048 0.952 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.029 0.971 28 H 0.078 0.922 29 H 0.120 0.880 30 H 0.389 0.611 31 H 0.280 0.720 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.031 0.969 36 H 0.350 0.650 37 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.657 -4.729 20.966 22.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 H 0.089 0.911 4 C -0.087 4.087 5 N -0.236 5.236 6 C -0.089 4.089 7 C 0.236 3.764 8 O -0.490 6.490 9 N -0.231 5.231 10 C -0.458 4.458 11 H 0.073 0.927 12 C -0.212 4.212 13 N -0.574 5.574 14 Si 0.784 3.216 15 H -0.181 1.181 16 H -0.199 1.199 17 H -0.155 1.155 18 C -0.090 4.090 19 C -0.099 4.099 20 H 0.099 0.901 21 C -0.055 4.055 22 N -0.389 5.389 23 H 0.098 0.902 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.047 0.953 28 H 0.095 0.905 29 H 0.138 0.862 30 H 0.225 0.775 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.050 0.950 36 H 0.164 0.836 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.936 -2.934 20.766 22.090 hybrid contribution -0.723 -2.016 -1.333 2.523 sum -7.659 -4.950 19.433 21.467 Atomic orbital electron populations 1.21896 0.93343 1.02120 1.02426 1.21910 0.96633 0.99220 0.93273 0.91075 1.23223 0.89947 0.97594 0.97937 1.65186 1.34553 1.21461 1.02406 1.22075 1.04078 0.93557 0.89171 1.20838 0.81504 0.86176 0.87894 1.90504 1.55245 1.19142 1.84092 1.42021 1.64471 1.09889 1.06766 1.19002 1.47368 0.96038 0.83423 0.92676 1.26106 0.96053 1.04901 0.94166 1.69805 1.48170 1.37955 1.01493 0.85374 0.79584 0.76373 0.80259 1.18092 1.19868 1.15539 1.23315 0.99637 0.96808 0.89207 1.21878 0.96727 0.96226 0.95028 0.90124 1.21903 0.95003 0.98287 0.90337 1.58722 1.22876 1.36310 1.21003 0.90217 0.93293 0.92236 0.91578 0.95259 0.90460 0.86247 0.77516 0.91088 0.92962 0.88919 0.89945 0.95044 0.83643 0.84332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 7.94 71.98 0.57 -2.22 16 2 C -0.09 -2.27 3.65 -9.90 -0.04 -2.31 16 3 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 4 C 0.04 1.39 4.86 86.45 0.42 1.81 16 5 N -0.51 -16.47 5.34 -886.03 -4.73 -21.20 16 6 C 0.04 1.39 5.55 85.56 0.47 1.86 16 7 C 0.45 20.82 7.50 87.66 0.66 21.47 16 8 O -0.61 -34.02 13.24 -3.07 -0.04 -34.06 16 9 N -0.59 -28.35 5.09 -306.98 -1.56 -29.91 16 10 C -0.33 -19.52 10.16 84.04 0.85 -18.66 16 11 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 12 C -0.01 -0.76 5.50 84.92 0.47 -0.29 16 13 N -0.93 -56.63 13.96 21.66 0.30 -56.33 16 14 Si 0.96 38.94 27.74 68.60 1.90 40.84 16 15 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 16 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 17 H -0.23 -7.92 6.52 99.48 0.65 -7.27 16 18 C 0.04 0.84 5.19 86.45 0.45 1.29 16 19 C -0.08 -1.65 3.31 -9.90 -0.03 -1.69 16 20 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 21 C 0.08 1.19 4.98 86.30 0.43 1.62 16 22 N -0.86 -11.75 9.62 -186.73 -1.80 -13.55 16 23 H 0.08 1.23 6.75 -2.38 -0.02 1.21 16 24 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 25 H 0.06 1.12 6.82 -2.39 -0.02 1.10 16 26 H 0.07 2.88 6.05 -2.38 -0.01 2.87 16 27 H 0.03 0.99 7.68 -2.39 -0.02 0.98 16 28 H 0.08 2.10 7.88 -2.39 -0.02 2.08 16 29 H 0.12 3.26 8.14 -2.39 -0.02 3.24 16 30 H 0.39 15.48 5.76 -92.71 -0.53 14.94 16 31 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 32 H 0.05 1.02 7.48 -2.39 -0.02 1.00 16 33 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.08 1.22 6.67 -2.39 -0.02 1.20 16 35 H 0.03 0.49 6.84 -2.39 -0.02 0.47 16 36 H 0.35 3.52 9.08 -89.70 -0.81 2.70 16 37 H 0.34 4.25 8.19 -89.69 -0.73 3.52 16 Total: -1.00 -74.78 289.95 -2.71 -77.49 By element: Atomic # 1 Polarization: 34.88 SS G_CDS: -1.04 Total: 33.83 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 4.25 Total: 2.88 kcal Atomic # 7 Polarization: -113.20 SS G_CDS: -7.78 Total: -120.98 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.04 Total: -34.06 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 1.90 Total: 40.84 kcal Total: -74.78 -2.71 -77.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708830758.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.802 kcal (2) G-P(sol) polarization free energy of solvation -74.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds