Wall clock time and date at job start Mon Mar 30 2020 03:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.27336 * 2 1 4 4 C 1.53987 * 110.39393 * 122.14977 * 2 1 3 5 5 N 1.47898 * 107.06194 * 117.73700 * 4 2 1 6 6 C 1.46901 * 111.00213 * 145.84228 * 5 4 2 7 7 C 1.50710 * 109.46794 * 183.36584 * 6 5 4 8 8 O 1.21284 * 119.99963 * 353.85995 * 7 6 5 9 9 N 1.34774 * 119.99563 * 173.86689 * 7 6 5 10 10 C 1.37100 * 119.99768 * 179.97438 * 9 7 6 11 11 H 1.07997 * 120.00185 * 359.97438 * 10 9 7 12 12 C 1.38950 * 119.99747 * 179.97438 * 10 9 7 13 13 N 1.31411 * 119.99702 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 120.00426 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47256 * 89.99876 * 14 12 10 16 16 H 1.48497 * 109.47201 * 210.00238 * 14 12 10 17 17 H 1.48504 * 109.46893 * 329.99666 * 14 12 10 18 18 C 1.48732 * 105.94405 * 25.20043 * 5 4 2 19 19 C 1.54597 * 110.30794 * 237.91689 * 2 1 3 20 20 H 1.09002 * 110.72685 * 337.55532 * 19 2 1 21 21 C 1.53000 * 110.72509 * 100.66733 * 19 2 1 22 22 N 1.46900 * 109.46925 * 182.54603 * 21 19 2 23 23 H 1.09004 * 109.46676 * 182.08184 * 1 2 3 24 24 H 1.08996 * 109.46977 * 302.08407 * 1 2 3 25 25 H 1.08999 * 109.47199 * 62.08990 * 1 2 3 26 26 H 1.09006 * 109.91769 * 237.08536 * 4 2 1 27 27 H 1.08997 * 109.91771 * 358.18156 * 4 2 1 28 28 H 1.08997 * 109.47344 * 303.35842 * 6 5 4 29 29 H 1.08998 * 109.47292 * 63.36641 * 6 5 4 30 30 H 0.97001 * 120.00070 * 359.97438 * 9 7 6 31 31 H 0.97004 * 120.00335 * 180.02562 * 13 12 10 32 32 H 1.09000 * 110.84401 * 202.57863 * 18 5 4 33 33 H 1.09000 * 110.58894 * 79.38123 * 18 5 4 34 34 H 1.08998 * 109.47340 * 62.54742 * 21 19 2 35 35 H 1.08998 * 109.47327 * 302.54477 * 21 19 2 36 36 H 1.00907 * 111.00128 * 179.97438 * 22 21 19 37 37 H 1.00896 * 111.00503 * 303.95229 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0666 -0.7681 1.2220 5 7 2.8346 -1.9220 0.7063 6 6 3.9796 -2.2233 1.5759 7 6 4.7834 -3.3484 0.9762 8 8 4.3779 -3.9240 -0.0113 9 7 5.9526 -3.7149 1.5375 10 6 6.6835 -4.7387 0.9923 11 1 6.3222 -5.2518 0.1134 12 6 7.8892 -5.1161 1.5707 13 7 8.5896 -6.0978 1.0484 14 14 8.5140 -4.2292 3.0913 15 1 8.0025 -4.9111 4.3073 16 1 9.9988 -4.2484 3.1006 17 1 8.0373 -2.8228 3.0749 18 6 3.2865 -1.5356 -0.6570 19 6 2.0666 -0.7701 -1.2284 20 1 1.3168 -1.4657 -1.6053 21 6 2.5029 0.2005 -2.3277 22 7 2.9500 -0.5594 -3.5027 23 1 -0.3633 -1.0270 0.0373 24 1 -0.3633 0.5458 0.8707 25 1 -0.3633 0.4810 -0.9081 26 1 2.7180 -0.1216 1.8102 27 1 1.2360 -1.1157 1.8362 28 1 4.6080 -1.3376 1.6692 29 1 3.6197 -2.5190 2.5613 30 1 6.2770 -3.2542 2.3271 31 1 9.4311 -6.3616 1.4523 32 1 3.5029 -2.4184 -1.2586 33 1 4.1582 -0.8835 -0.6015 34 1 3.3223 0.8192 -1.9619 35 1 1.6627 0.8371 -2.6049 36 1 3.2432 0.0597 -4.2436 37 1 3.6860 -1.2045 -3.2576 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708830760.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:52 Heat of formation + Delta-G solvation = -32.312314 kcal Electronic energy + Delta-G solvation = -17760.797209 eV Core-core repulsion = 14958.748872 eV Total energy + Delta-G solvation = -2802.048336 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.58379 -37.95354 -34.82606 -33.96026 -32.77733 -31.65700 -29.36017 -27.64605 -25.62637 -24.56384 -22.72812 -20.65346 -19.87412 -19.35017 -18.27544 -16.25230 -16.03795 -15.18840 -15.12693 -14.77921 -14.70511 -14.13526 -13.64491 -13.31543 -13.20920 -13.06254 -12.81269 -12.50968 -12.25287 -12.07630 -11.62875 -11.39086 -11.18412 -10.93194 -10.71498 -10.60295 -10.53082 -10.36853 -9.97371 -9.53702 -8.72711 -8.50795 -8.18348 -8.01036 -6.30919 -3.82138 3.01854 3.06601 3.14541 3.74830 4.05441 4.10682 4.44815 4.55587 4.69980 4.92518 4.95374 5.21703 5.24793 5.30396 5.44077 5.53890 5.56913 5.62997 5.66604 5.70412 5.82259 5.88126 5.97330 6.01628 6.06894 6.19017 6.44013 6.56218 7.09433 7.18343 7.21785 7.41071 7.59219 8.15028 8.60766 8.95703 9.42891 9.84129 10.82261 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.034139 B = 0.005516 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.990891 B = 5075.235458 C = 5519.629153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 H 0.070 0.930 4 C 0.038 3.962 5 N -0.493 5.493 6 C 0.034 3.966 7 C 0.452 3.548 8 O -0.558 6.558 9 N -0.592 5.592 10 C -0.304 4.304 11 H 0.120 0.880 12 C 0.042 3.958 13 N -0.882 5.882 14 Si 0.879 3.121 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.271 1.271 18 C 0.043 3.957 19 C -0.089 4.089 20 H 0.092 0.908 21 C 0.073 3.927 22 N -0.852 5.852 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.079 0.921 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.370 0.630 31 H 0.273 0.727 32 H 0.108 0.892 33 H 0.031 0.969 34 H 0.022 0.978 35 H 0.069 0.931 36 H 0.338 0.662 37 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.595 15.389 0.329 18.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.117 4.117 3 H 0.089 0.911 4 C -0.091 4.091 5 N -0.216 5.216 6 C -0.098 4.098 7 C 0.237 3.763 8 O -0.440 6.440 9 N -0.231 5.231 10 C -0.433 4.433 11 H 0.138 0.862 12 C -0.161 4.161 13 N -0.522 5.522 14 Si 0.705 3.295 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 C -0.084 4.084 19 C -0.109 4.109 20 H 0.111 0.889 21 C -0.058 4.058 22 N -0.381 5.381 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.064 0.936 29 H 0.109 0.891 30 H 0.202 0.798 31 H 0.084 0.916 32 H 0.126 0.874 33 H 0.050 0.950 34 H 0.041 0.959 35 H 0.087 0.913 36 H 0.149 0.851 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.732 14.092 -0.357 18.340 hybrid contribution 2.253 1.832 1.626 3.328 sum -9.480 15.924 1.269 18.576 Atomic orbital electron populations 1.21805 0.94352 1.02287 1.01194 1.21991 0.96389 0.98675 0.94665 0.91118 1.23004 0.98125 0.91330 0.96600 1.64502 1.20234 1.34918 1.01989 1.22124 0.92324 0.97562 0.97795 1.19631 0.82661 0.87028 0.86932 1.90532 1.70002 1.56482 1.26943 1.42219 1.19817 1.33349 1.27760 1.19433 1.01366 1.09408 1.13060 0.86239 1.25027 0.96270 0.96682 0.98144 1.69621 1.14704 1.27485 1.40375 0.86684 0.79491 0.79684 0.83594 1.19564 1.20195 1.19631 1.23434 0.94509 0.99797 0.90664 1.22262 0.98425 0.96767 0.93403 0.88937 1.21769 0.98720 0.94792 0.90515 1.58696 1.46442 1.22734 1.10269 0.91974 0.92923 0.92754 0.94251 0.90274 0.93630 0.89061 0.79765 0.91632 0.87367 0.95036 0.95938 0.91265 0.85066 0.83937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.89 37.16 0.33 -1.00 16 2 C -0.10 -1.09 3.16 -89.27 -0.28 -1.37 16 3 H 0.07 0.71 7.85 -51.93 -0.41 0.31 16 4 C 0.04 0.48 6.37 -2.76 -0.02 0.46 16 5 N -0.49 -8.24 5.11 -231.71 -1.18 -9.42 16 6 C 0.03 0.59 5.31 -4.97 -0.03 0.57 16 7 C 0.45 10.40 7.41 -10.98 -0.08 10.32 16 8 O -0.56 -14.92 13.87 5.55 0.08 -14.84 16 9 N -0.59 -14.24 5.09 -10.96 -0.06 -14.29 16 10 C -0.30 -8.63 10.16 -14.93 -0.15 -8.78 16 11 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 12 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 13 N -0.88 -25.83 13.96 55.50 0.77 -25.06 16 14 Si 0.88 19.46 27.74 -169.99 -4.71 14.75 16 15 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 18 C 0.04 0.71 4.35 -1.78 -0.01 0.70 16 19 C -0.09 -1.16 2.83 -88.75 -0.25 -1.41 16 20 H 0.09 1.34 7.86 -51.93 -0.41 0.93 16 21 C 0.07 0.82 6.15 -3.82 -0.02 0.80 16 22 N -0.85 -9.92 9.62 -10.37 -0.10 -10.02 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.04 0.47 7.68 -51.93 -0.40 0.07 16 27 H 0.08 0.95 7.69 -51.93 -0.40 0.55 16 28 H 0.05 0.71 7.99 -51.93 -0.41 0.30 16 29 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.37 7.85 5.76 -40.82 -0.24 7.61 16 31 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.11 2.15 6.36 -51.93 -0.33 1.82 16 33 H 0.03 0.51 7.85 -51.93 -0.41 0.10 16 34 H 0.02 0.25 8.05 -51.93 -0.42 -0.17 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.34 3.17 9.08 -39.29 -0.36 2.81 16 37 H 0.35 4.39 8.25 -39.29 -0.32 4.06 16 LS Contribution 297.09 15.07 4.48 4.48 Total: -1.00 -31.79 297.09 -7.10 -38.89 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -5.77 Total: 14.18 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -0.61 Total: 1.34 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -0.56 Total: -58.79 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.08 Total: -14.84 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.71 Total: 14.75 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.79 -7.10 -38.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708830760.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.580 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds