Wall clock time and date at job start Mon Mar 30 2020 03:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.27336 * 2 1 4 4 C 1.53987 * 110.39393 * 122.14977 * 2 1 3 5 5 N 1.47898 * 107.06194 * 117.73700 * 4 2 1 6 6 C 1.46901 * 111.00213 * 145.84228 * 5 4 2 7 7 C 1.50710 * 109.46794 * 183.36584 * 6 5 4 8 8 O 1.21284 * 119.99963 * 353.85995 * 7 6 5 9 9 N 1.34774 * 119.99563 * 173.86689 * 7 6 5 10 10 C 1.37100 * 119.99768 * 179.97438 * 9 7 6 11 11 H 1.07997 * 120.00185 * 359.97438 * 10 9 7 12 12 C 1.38950 * 119.99747 * 179.97438 * 10 9 7 13 13 N 1.31411 * 119.99702 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 120.00426 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47256 * 89.99876 * 14 12 10 16 16 H 1.48497 * 109.47201 * 210.00238 * 14 12 10 17 17 H 1.48504 * 109.46893 * 329.99666 * 14 12 10 18 18 C 1.48732 * 105.94405 * 25.20043 * 5 4 2 19 19 C 1.54597 * 110.30794 * 237.91689 * 2 1 3 20 20 H 1.09002 * 110.72685 * 337.55532 * 19 2 1 21 21 C 1.53000 * 110.72509 * 100.66733 * 19 2 1 22 22 N 1.46900 * 109.46925 * 182.54603 * 21 19 2 23 23 H 1.09004 * 109.46676 * 182.08184 * 1 2 3 24 24 H 1.08996 * 109.46977 * 302.08407 * 1 2 3 25 25 H 1.08999 * 109.47199 * 62.08990 * 1 2 3 26 26 H 1.09006 * 109.91769 * 237.08536 * 4 2 1 27 27 H 1.08997 * 109.91771 * 358.18156 * 4 2 1 28 28 H 1.08997 * 109.47344 * 303.35842 * 6 5 4 29 29 H 1.08998 * 109.47292 * 63.36641 * 6 5 4 30 30 H 0.97001 * 120.00070 * 359.97438 * 9 7 6 31 31 H 0.97004 * 120.00335 * 180.02562 * 13 12 10 32 32 H 1.09000 * 110.84401 * 202.57863 * 18 5 4 33 33 H 1.09000 * 110.58894 * 79.38123 * 18 5 4 34 34 H 1.08998 * 109.47340 * 62.54742 * 21 19 2 35 35 H 1.08998 * 109.47327 * 302.54477 * 21 19 2 36 36 H 1.00907 * 111.00128 * 179.97438 * 22 21 19 37 37 H 1.00896 * 111.00503 * 303.95229 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0666 -0.7681 1.2220 5 7 2.8346 -1.9220 0.7063 6 6 3.9796 -2.2233 1.5759 7 6 4.7834 -3.3484 0.9762 8 8 4.3779 -3.9240 -0.0113 9 7 5.9526 -3.7149 1.5375 10 6 6.6835 -4.7387 0.9923 11 1 6.3222 -5.2518 0.1134 12 6 7.8892 -5.1161 1.5707 13 7 8.5896 -6.0978 1.0484 14 14 8.5140 -4.2292 3.0913 15 1 8.0025 -4.9111 4.3073 16 1 9.9988 -4.2484 3.1006 17 1 8.0373 -2.8228 3.0749 18 6 3.2865 -1.5356 -0.6570 19 6 2.0666 -0.7701 -1.2284 20 1 1.3168 -1.4657 -1.6053 21 6 2.5029 0.2005 -2.3277 22 7 2.9500 -0.5594 -3.5027 23 1 -0.3633 -1.0270 0.0373 24 1 -0.3633 0.5458 0.8707 25 1 -0.3633 0.4810 -0.9081 26 1 2.7180 -0.1216 1.8102 27 1 1.2360 -1.1157 1.8362 28 1 4.6080 -1.3376 1.6692 29 1 3.6197 -2.5190 2.5613 30 1 6.2770 -3.2542 2.3271 31 1 9.4311 -6.3616 1.4523 32 1 3.5029 -2.4184 -1.2586 33 1 4.1582 -0.8835 -0.6015 34 1 3.3223 0.8192 -1.9619 35 1 1.6627 0.8371 -2.6049 36 1 3.2432 0.0597 -4.2436 37 1 3.6860 -1.2045 -3.2576 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708830760.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:52 Heat of formation + Delta-G solvation = -59.550239 kcal Electronic energy + Delta-G solvation = -17761.978334 eV Core-core repulsion = 14958.748872 eV Total energy + Delta-G solvation = -2803.229461 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.93012 -39.58254 -36.17176 -35.68886 -33.90523 -33.69851 -30.46296 -29.04226 -26.77686 -26.19523 -23.98008 -21.76063 -21.28624 -20.84712 -20.20882 -17.85924 -17.19906 -16.75677 -16.38799 -16.28477 -15.97426 -15.33041 -15.18568 -14.68898 -14.54115 -14.37801 -14.12137 -13.90466 -13.67238 -13.33293 -13.02027 -12.78535 -12.43401 -12.38133 -12.03274 -11.98645 -11.59914 -11.57062 -11.54156 -11.35562 -10.34378 -10.24924 -9.63831 -9.30099 -8.42357 -6.03175 1.28273 1.34142 1.42708 1.93352 2.21574 2.67218 3.13371 3.20274 3.51141 3.64729 3.84150 4.02104 4.15622 4.25278 4.32151 4.40987 4.45190 4.53041 4.63081 4.69670 4.71215 4.85673 4.97591 5.10178 5.18250 5.28610 5.32339 5.50177 5.51818 5.89405 5.95771 6.09044 6.18755 6.54172 6.58787 6.87177 7.38048 7.95334 8.75367 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.034139 B = 0.005516 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.990891 B = 5075.235458 C = 5519.629153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 H 0.092 0.908 4 C 0.037 3.963 5 N -0.519 5.519 6 C 0.045 3.955 7 C 0.449 3.551 8 O -0.604 6.604 9 N -0.592 5.592 10 C -0.328 4.328 11 H 0.055 0.945 12 C -0.014 4.014 13 N -0.934 5.934 14 Si 0.964 3.036 15 H -0.256 1.256 16 H -0.274 1.274 17 H -0.233 1.233 18 C 0.047 3.953 19 C -0.081 4.081 20 H 0.071 0.929 21 C 0.077 3.923 22 N -0.863 5.863 23 H 0.046 0.954 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.389 0.611 31 H 0.279 0.721 32 H 0.060 0.940 33 H 0.031 0.969 34 H 0.030 0.970 35 H 0.088 0.912 36 H 0.350 0.650 37 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.271 18.912 2.881 22.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.110 4.110 3 H 0.110 0.890 4 C -0.090 4.090 5 N -0.244 5.244 6 C -0.086 4.086 7 C 0.237 3.763 8 O -0.488 6.488 9 N -0.234 5.234 10 C -0.457 4.457 11 H 0.073 0.927 12 C -0.212 4.212 13 N -0.575 5.575 14 Si 0.784 3.216 15 H -0.181 1.181 16 H -0.199 1.199 17 H -0.157 1.157 18 C -0.081 4.081 19 C -0.101 4.101 20 H 0.089 0.911 21 C -0.054 4.054 22 N -0.393 5.393 23 H 0.065 0.935 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.106 0.894 28 H 0.093 0.907 29 H 0.137 0.863 30 H 0.224 0.776 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.106 0.894 36 H 0.163 0.837 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.440 17.648 2.192 21.703 hybrid contribution 2.391 0.651 0.699 2.574 sum -10.049 18.299 2.891 21.076 Atomic orbital electron populations 1.21775 0.93069 1.01796 1.02602 1.22003 0.97391 0.99034 0.92531 0.88985 1.23121 0.98136 0.90337 0.97445 1.64444 1.20220 1.37674 1.02065 1.22067 0.92361 0.95913 0.98291 1.20842 0.82190 0.87398 0.85893 1.90529 1.70970 1.58230 1.29041 1.42038 1.20066 1.32764 1.28494 1.18999 1.02994 1.11327 1.12369 0.92668 1.26094 0.95597 0.97269 1.02284 1.69804 1.15441 1.29501 1.42749 0.85375 0.78593 0.79958 0.77658 1.18088 1.19912 1.15671 1.23230 0.96119 0.98143 0.90616 1.22169 0.96337 0.96711 0.94861 0.91051 1.21782 0.99570 0.94332 0.89734 1.58716 1.46243 1.23238 1.11120 0.93476 0.91006 0.91842 0.92256 0.89354 0.90655 0.86284 0.77585 0.91125 0.92128 0.95051 0.95144 0.89404 0.83652 0.84995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.89 71.98 0.64 -1.53 16 2 C -0.09 -1.73 3.16 -9.92 -0.03 -1.76 16 3 H 0.09 1.43 7.85 -2.39 -0.02 1.41 16 4 C 0.04 0.81 6.37 86.44 0.55 1.37 16 5 N -0.52 -16.66 5.11 -887.00 -4.53 -21.19 16 6 C 0.05 1.47 5.31 85.56 0.45 1.92 16 7 C 0.45 20.88 7.41 87.66 0.65 21.53 16 8 O -0.60 -34.12 13.87 -3.04 -0.04 -34.16 16 9 N -0.59 -28.44 5.09 -306.99 -1.56 -30.00 16 10 C -0.33 -19.43 10.16 84.04 0.85 -18.57 16 11 H 0.06 3.90 7.39 -2.91 -0.02 3.88 16 12 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 13 N -0.93 -56.72 13.96 21.66 0.30 -56.42 16 14 Si 0.96 39.04 27.74 68.60 1.90 40.95 16 15 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 16 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 17 H -0.23 -7.98 6.52 99.48 0.65 -7.33 16 18 C 0.05 1.54 4.35 86.61 0.38 1.91 16 19 C -0.08 -2.03 2.83 -9.58 -0.03 -2.06 16 20 H 0.07 2.08 7.86 -2.39 -0.02 2.06 16 21 C 0.08 1.60 6.15 86.30 0.53 2.13 16 22 N -0.86 -19.93 9.62 -186.72 -1.80 -21.73 16 23 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 1.11 7.68 -2.38 -0.02 1.09 16 27 H 0.09 1.81 7.69 -2.39 -0.02 1.79 16 28 H 0.08 2.05 7.99 -2.39 -0.02 2.03 16 29 H 0.12 3.26 8.14 -2.39 -0.02 3.24 16 30 H 0.39 15.49 5.76 -92.71 -0.53 14.96 16 31 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 32 H 0.06 2.57 6.36 -2.39 -0.02 2.55 16 33 H 0.03 1.00 7.85 -2.39 -0.02 0.99 16 34 H 0.03 0.60 8.05 -2.39 -0.02 0.58 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.35 6.32 9.08 -89.69 -0.81 5.51 16 37 H 0.34 8.94 8.25 -89.70 -0.74 8.20 16 Total: -1.00 -75.21 297.09 -2.32 -77.53 By element: Atomic # 1 Polarization: 41.45 SS G_CDS: -1.06 Total: 40.39 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 4.47 Total: 4.63 kcal Atomic # 7 Polarization: -121.75 SS G_CDS: -7.59 Total: -129.34 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.04 Total: -34.16 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 1.90 Total: 40.95 kcal Total: -75.21 -2.32 -77.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708830760.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.983 kcal (2) G-P(sol) polarization free energy of solvation -75.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds