Wall clock time and date at job start Mon Mar 30 2020 03:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00602 * 2 1 4 4 C 1.52998 * 109.47745 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.79297 * 31.23761 * 4 3 2 6 6 C 1.53059 * 109.63282 * 270.73666 * 4 3 2 7 7 C 1.51795 * 110.74595 * 325.21701 * 6 4 3 8 8 C 1.51775 * 113.70472 * 293.25816 * 7 6 4 9 9 C 1.52782 * 111.01228 * 67.08032 * 8 7 6 10 10 N 1.47194 * 108.56891 * 273.43134 * 9 8 7 11 11 C 1.46499 * 119.78763 * 251.93480 * 10 9 8 12 12 C 1.50699 * 109.46765 * 270.02127 * 11 10 9 13 13 H 1.08002 * 120.00190 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00027 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00327 * 180.02562 * 14 12 11 16 16 Si 1.86807 * 119.99662 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47244 * 89.99897 * 16 14 12 18 18 H 1.48503 * 109.46653 * 210.00039 * 16 14 12 19 19 H 1.48501 * 109.47027 * 329.99472 * 16 14 12 20 20 C 1.33379 * 120.42801 * 71.95543 * 10 9 8 21 21 O 1.21282 * 119.89150 * 179.65854 * 20 10 9 22 22 H 1.09000 * 109.46959 * 299.99735 * 1 2 3 23 23 H 1.08998 * 109.47262 * 59.99999 * 1 2 3 24 24 H 1.09001 * 109.47459 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47064 * 59.99663 * 3 2 1 26 26 H 1.09006 * 109.47049 * 300.00636 * 3 2 1 27 27 H 1.09001 * 109.21676 * 204.89421 * 6 4 3 28 28 H 1.08992 * 109.22407 * 85.54237 * 6 4 3 29 29 H 1.08995 * 108.61704 * 54.30664 * 7 6 4 30 30 H 1.08999 * 108.61634 * 172.21000 * 7 6 4 31 31 H 1.09004 * 109.19775 * 187.28796 * 8 7 6 32 32 H 1.09001 * 109.19560 * 306.56610 * 8 7 6 33 33 H 1.09000 * 109.68380 * 153.69519 * 9 8 7 34 34 H 1.09000 * 109.62108 * 33.13918 * 9 8 7 35 35 H 1.08997 * 109.46791 * 30.01995 * 11 10 9 36 36 H 1.08994 * 109.47494 * 150.02386 * 11 10 9 37 37 H 0.97000 * 119.99998 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8340 0.2813 -0.5328 6 6 4.0473 1.1252 1.4406 7 6 3.1961 1.9932 2.3496 8 6 3.3080 3.4780 2.0556 9 6 2.7071 3.8131 0.6914 10 7 3.7434 3.6235 -0.3366 11 6 4.3409 4.7899 -0.9914 12 6 3.5409 5.1412 -2.2192 13 1 2.6738 4.5547 -2.4849 14 6 3.9152 6.2121 -3.0028 15 7 3.2168 6.5191 -4.0740 16 14 5.4145 7.2271 -2.5428 17 1 6.6202 6.6506 -3.1901 18 1 5.2258 8.6259 -3.0043 19 1 5.5892 7.2117 -1.0681 20 6 4.1416 2.3967 -0.6761 21 8 4.9918 2.2515 -1.5288 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.6887 1.8463 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 5.0783 1.4778 1.4701 28 1 4.0112 0.0942 1.7921 29 1 2.1537 1.6944 2.2399 30 1 3.5002 1.8190 3.3817 31 1 2.7754 4.0369 2.8251 32 1 4.3589 3.7672 2.0663 33 1 2.3695 4.8495 0.6836 34 1 1.8658 3.1502 0.4893 35 1 4.3385 5.6343 -0.3022 36 1 5.3664 4.5591 -1.2797 37 1 3.4804 7.2723 -4.6255 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711550010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:57 Heat of formation + Delta-G solvation = -60.925459 kcal Electronic energy + Delta-G solvation = -18567.749647 eV Core-core repulsion = 15732.167801 eV Total energy + Delta-G solvation = -2835.581846 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.46613 -37.69637 -36.23789 -34.53316 -32.40184 -31.29295 -28.97856 -27.57651 -26.09433 -24.30820 -23.62722 -22.22465 -19.62255 -18.42253 -16.96988 -16.83560 -16.50501 -15.74947 -15.49870 -14.71790 -14.57135 -13.97294 -13.79655 -13.45745 -13.27626 -13.15908 -12.63872 -12.37302 -11.98380 -11.76061 -11.48808 -11.38530 -11.22852 -11.00310 -10.60790 -10.58605 -10.44061 -10.17164 -10.08652 -9.53925 -9.39936 -8.90636 -8.59233 -7.72637 -6.09241 -4.08036 3.27973 3.28750 3.34712 3.36778 3.77298 3.94281 4.39192 4.64791 4.81731 4.97462 5.00798 5.18419 5.21717 5.24486 5.34387 5.42285 5.46799 5.57657 5.64337 5.66078 5.74688 5.90907 5.99241 6.04039 6.07199 6.17801 6.23643 6.43829 6.70973 6.95468 7.18518 7.32512 7.60553 8.28501 8.46406 8.92402 9.00249 9.51083 11.04157 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.028708 B = 0.007412 C = 0.006836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.090671 B = 3776.786382 C = 4094.700875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.392 6.392 3 C 0.043 3.957 4 C -0.104 4.104 5 H 0.109 0.891 6 C -0.106 4.106 7 C -0.129 4.129 8 C -0.142 4.142 9 C 0.086 3.914 10 N -0.585 5.585 11 C 0.213 3.787 12 C -0.529 4.529 13 H 0.074 0.926 14 C 0.072 3.928 15 N -0.898 5.898 16 Si 0.877 3.123 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.266 1.266 20 C 0.517 3.483 21 O -0.544 6.544 22 H 0.039 0.961 23 H 0.042 0.958 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.030 0.970 36 H 0.037 0.963 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.243 -8.639 14.653 17.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.311 6.311 3 C -0.032 4.032 4 C -0.126 4.126 5 H 0.127 0.873 6 C -0.143 4.143 7 C -0.166 4.166 8 C -0.180 4.180 9 C -0.037 4.037 10 N -0.315 5.315 11 C 0.093 3.907 12 C -0.567 4.567 13 H 0.092 0.908 14 C -0.130 4.130 15 N -0.536 5.536 16 Si 0.704 3.296 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.191 1.191 20 C 0.302 3.698 21 O -0.421 6.421 22 H 0.058 0.942 23 H 0.061 0.939 24 H 0.102 0.898 25 H 0.104 0.896 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.684 -8.716 14.046 16.936 hybrid contribution 0.454 0.893 0.020 1.002 sum -3.230 -7.823 14.067 16.417 Atomic orbital electron populations 1.22718 0.81268 1.02476 1.00107 1.87861 1.19472 1.28319 1.95460 1.23514 0.92946 0.84692 1.02086 1.21599 0.94101 0.98834 0.98021 0.87255 1.21239 0.99925 1.00513 0.92664 1.21302 1.00831 0.95003 0.99414 1.21828 1.02640 0.95962 0.97606 1.22256 0.91381 1.03561 0.86512 1.47754 1.38685 1.06760 1.38349 1.19711 0.95128 0.82608 0.93300 1.21321 1.13577 1.14009 1.07798 0.90813 1.24858 0.96521 0.97042 0.94588 1.69896 1.39661 1.28756 1.15290 0.86844 0.83859 0.79625 0.79320 1.19886 1.21067 1.19082 1.19935 0.83144 0.84194 0.82504 1.90691 1.33446 1.85837 1.32170 0.94205 0.93899 0.89828 0.89584 0.92411 0.91440 0.90818 0.91151 0.91848 0.90957 0.91168 0.89278 0.89724 0.95204 0.94528 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.44 16 2 O -0.39 -5.47 10.67 -35.23 -0.38 -5.85 16 3 C 0.04 0.62 3.52 37.16 0.13 0.75 16 4 C -0.10 -1.67 2.85 -91.39 -0.26 -1.94 16 5 H 0.11 1.83 8.08 -51.93 -0.42 1.41 16 6 C -0.11 -1.36 5.48 -27.31 -0.15 -1.51 16 7 C -0.13 -1.39 5.20 -27.96 -0.15 -1.54 16 8 C -0.14 -1.72 5.71 -27.46 -0.16 -1.88 16 9 C 0.09 1.33 5.80 -3.77 -0.02 1.31 16 10 N -0.58 -12.08 2.43 -174.73 -0.42 -12.50 16 11 C 0.21 5.24 4.14 -5.19 -0.02 5.22 16 12 C -0.53 -15.28 9.94 -34.44 -0.34 -15.62 16 13 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 14 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 15 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 16 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 17 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 20 C 0.52 10.94 6.17 -11.25 -0.07 10.87 16 21 O -0.54 -14.12 16.60 5.56 0.09 -14.03 16 22 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 23 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.09 1.06 2.80 -51.93 -0.15 0.91 16 26 H 0.06 0.96 7.57 -51.93 -0.39 0.57 16 27 H 0.07 0.93 7.86 -51.93 -0.41 0.52 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.71 5.56 -51.93 -0.29 0.42 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.95 8.04 -51.93 -0.42 0.53 16 33 H 0.09 1.38 7.92 -51.93 -0.41 0.97 16 34 H 0.09 1.18 3.62 -51.93 -0.19 1.00 16 35 H 0.03 0.69 7.09 -51.93 -0.37 0.32 16 36 H 0.04 0.97 6.81 -51.93 -0.35 0.62 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 287.74 15.07 4.34 4.34 Total: -1.00 -34.27 287.74 -5.81 -40.08 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -5.52 Total: -1.15 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -0.02 Total: -0.88 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.35 Total: -39.53 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.28 Total: -19.88 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -34.27 -5.81 -40.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711550010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.844 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds