Wall clock time and date at job start Mon Mar 30 2020 03:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00602 * 2 1 4 4 C 1.52998 * 109.47745 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.79297 * 31.23761 * 4 3 2 6 6 C 1.53059 * 109.63282 * 270.73666 * 4 3 2 7 7 C 1.51795 * 110.74595 * 325.21701 * 6 4 3 8 8 C 1.51775 * 113.70472 * 293.25816 * 7 6 4 9 9 C 1.52782 * 111.01228 * 67.08032 * 8 7 6 10 10 N 1.47194 * 108.56891 * 273.43134 * 9 8 7 11 11 C 1.46499 * 119.78763 * 251.93480 * 10 9 8 12 12 C 1.50699 * 109.46765 * 270.02127 * 11 10 9 13 13 H 1.08002 * 120.00190 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00027 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00327 * 180.02562 * 14 12 11 16 16 Si 1.86807 * 119.99662 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47244 * 89.99897 * 16 14 12 18 18 H 1.48503 * 109.46653 * 210.00039 * 16 14 12 19 19 H 1.48501 * 109.47027 * 329.99472 * 16 14 12 20 20 C 1.33379 * 120.42801 * 71.95543 * 10 9 8 21 21 O 1.21282 * 119.89150 * 179.65854 * 20 10 9 22 22 H 1.09000 * 109.46959 * 299.99735 * 1 2 3 23 23 H 1.08998 * 109.47262 * 59.99999 * 1 2 3 24 24 H 1.09001 * 109.47459 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47064 * 59.99663 * 3 2 1 26 26 H 1.09006 * 109.47049 * 300.00636 * 3 2 1 27 27 H 1.09001 * 109.21676 * 204.89421 * 6 4 3 28 28 H 1.08992 * 109.22407 * 85.54237 * 6 4 3 29 29 H 1.08995 * 108.61704 * 54.30664 * 7 6 4 30 30 H 1.08999 * 108.61634 * 172.21000 * 7 6 4 31 31 H 1.09004 * 109.19775 * 187.28796 * 8 7 6 32 32 H 1.09001 * 109.19560 * 306.56610 * 8 7 6 33 33 H 1.09000 * 109.68380 * 153.69519 * 9 8 7 34 34 H 1.09000 * 109.62108 * 33.13918 * 9 8 7 35 35 H 1.08997 * 109.46791 * 30.01995 * 11 10 9 36 36 H 1.08994 * 109.47494 * 150.02386 * 11 10 9 37 37 H 0.97000 * 119.99998 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8340 0.2813 -0.5328 6 6 4.0473 1.1252 1.4406 7 6 3.1961 1.9932 2.3496 8 6 3.3080 3.4780 2.0556 9 6 2.7071 3.8131 0.6914 10 7 3.7434 3.6235 -0.3366 11 6 4.3409 4.7899 -0.9914 12 6 3.5409 5.1412 -2.2192 13 1 2.6738 4.5547 -2.4849 14 6 3.9152 6.2121 -3.0028 15 7 3.2168 6.5191 -4.0740 16 14 5.4145 7.2271 -2.5428 17 1 6.6202 6.6506 -3.1901 18 1 5.2258 8.6259 -3.0043 19 1 5.5892 7.2117 -1.0681 20 6 4.1416 2.3967 -0.6761 21 8 4.9918 2.2515 -1.5288 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.6887 1.8463 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 5.0783 1.4778 1.4701 28 1 4.0112 0.0942 1.7921 29 1 2.1537 1.6944 2.2399 30 1 3.5002 1.8190 3.3817 31 1 2.7754 4.0369 2.8251 32 1 4.3589 3.7672 2.0663 33 1 2.3695 4.8495 0.6836 34 1 1.8658 3.1502 0.4893 35 1 4.3385 5.6343 -0.3022 36 1 5.3664 4.5591 -1.2797 37 1 3.4804 7.2723 -4.6255 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711550010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:56 Heat of formation + Delta-G solvation = -85.865473 kcal Electronic energy + Delta-G solvation = -18568.831127 eV Core-core repulsion = 15732.167801 eV Total energy + Delta-G solvation = -2836.663327 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.88212 -38.99065 -37.59471 -36.15359 -34.48927 -32.52845 -30.65062 -28.95686 -27.21773 -25.45949 -25.10967 -23.98838 -20.78335 -19.93912 -19.13176 -18.14848 -17.83624 -17.00662 -16.98633 -16.28833 -15.80907 -15.49257 -15.07395 -14.82695 -14.64705 -14.44346 -14.40442 -13.90342 -13.52837 -13.19142 -12.87615 -12.75336 -12.47390 -12.43362 -12.27254 -12.04710 -11.79538 -11.61716 -11.51935 -11.19418 -10.85962 -10.70344 -10.38306 -9.44525 -8.36748 -6.42356 1.30417 1.35270 1.43424 1.68385 2.24943 2.28947 2.76000 2.97597 3.50725 3.76164 3.77174 3.94682 4.07324 4.20775 4.34105 4.43779 4.45776 4.55715 4.58765 4.62226 4.72402 4.81978 4.86178 4.88598 4.95558 5.06711 5.12226 5.20966 5.27008 5.42143 5.50051 5.59405 6.16423 6.20002 6.58455 6.66798 7.17568 7.35204 8.80257 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.028708 B = 0.007412 C = 0.006836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.090671 B = 3776.786382 C = 4094.700875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.406 6.406 3 C 0.052 3.948 4 C -0.096 4.096 5 H 0.097 0.903 6 C -0.101 4.101 7 C -0.126 4.126 8 C -0.134 4.134 9 C 0.075 3.925 10 N -0.588 5.588 11 C 0.221 3.779 12 C -0.538 4.538 13 H 0.027 0.973 14 C 0.011 3.989 15 N -0.945 5.945 16 Si 0.949 3.051 17 H -0.278 1.278 18 H -0.272 1.272 19 H -0.236 1.236 20 C 0.505 3.495 21 O -0.607 6.607 22 H 0.064 0.936 23 H 0.034 0.966 24 H 0.104 0.896 25 H 0.117 0.883 26 H 0.025 0.975 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.016 0.984 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.504 -8.648 18.181 20.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.325 6.325 3 C -0.023 4.023 4 C -0.118 4.118 5 H 0.115 0.885 6 C -0.139 4.139 7 C -0.162 4.162 8 C -0.172 4.172 9 C -0.046 4.046 10 N -0.317 5.317 11 C 0.099 3.901 12 C -0.577 4.577 13 H 0.045 0.955 14 C -0.187 4.187 15 N -0.585 5.585 16 Si 0.771 3.229 17 H -0.204 1.204 18 H -0.197 1.197 19 H -0.159 1.159 20 C 0.293 3.707 21 O -0.489 6.489 22 H 0.082 0.918 23 H 0.053 0.947 24 H 0.122 0.878 25 H 0.134 0.866 26 H 0.043 0.957 27 H 0.074 0.926 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.072 0.928 36 H 0.034 0.966 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.997 -8.734 17.633 20.079 hybrid contribution 0.413 0.819 -1.153 1.473 sum -3.584 -7.915 16.480 18.630 Atomic orbital electron populations 1.22986 0.79280 1.04196 1.00933 1.87831 1.21591 1.27560 1.95557 1.23373 0.91695 0.85279 1.01947 1.21506 0.95219 0.95277 0.99800 0.88506 1.21289 0.99559 1.02628 0.90415 1.21311 1.01183 0.93319 1.00408 1.21791 1.01980 0.97604 0.95843 1.22668 0.90765 1.04102 0.87095 1.47873 1.39297 1.05618 1.38889 1.19403 0.93483 0.84850 0.92396 1.21543 1.12726 1.13570 1.09856 0.95468 1.25866 1.00045 0.98472 0.94293 1.70047 1.41884 1.29786 1.16744 0.85705 0.78616 0.77802 0.80766 1.20395 1.19733 1.15902 1.20908 0.82341 0.85646 0.81764 1.90641 1.36357 1.86888 1.35044 0.91755 0.94686 0.87763 0.86573 0.95651 0.92609 0.88419 0.89660 0.88643 0.87351 0.92457 0.89409 0.88368 0.92751 0.96593 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 11.01 113.37 1.25 1.66 16 2 O -0.41 -10.63 10.67 -148.98 -1.59 -12.21 16 3 C 0.05 1.46 3.52 71.98 0.25 1.71 16 4 C -0.10 -3.08 2.85 -11.29 -0.03 -3.11 16 5 H 0.10 3.30 8.08 -2.39 -0.02 3.29 16 6 C -0.10 -2.33 5.48 30.22 0.17 -2.17 16 7 C -0.13 -2.14 5.20 29.80 0.15 -1.99 16 8 C -0.13 -2.75 5.71 30.12 0.17 -2.57 16 9 C 0.07 2.18 5.80 86.17 0.50 2.68 16 10 N -0.59 -24.52 2.43 -825.89 -2.01 -26.53 16 11 C 0.22 11.01 4.14 85.63 0.35 11.36 16 12 C -0.54 -32.34 9.94 25.60 0.25 -32.08 16 13 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 14 C 0.01 0.68 5.47 84.66 0.46 1.14 16 15 N -0.94 -60.42 13.96 21.45 0.30 -60.12 16 16 Si 0.95 44.93 27.47 68.60 1.88 46.81 16 17 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.24 -9.95 6.54 99.48 0.65 -9.30 16 20 C 0.51 22.07 6.17 88.10 0.54 22.62 16 21 O -0.61 -33.29 16.60 -3.04 -0.05 -33.34 16 22 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.12 2.49 2.80 -2.38 -0.01 2.48 16 26 H 0.03 0.86 7.57 -2.38 -0.02 0.85 16 27 H 0.06 1.43 7.86 -2.39 -0.02 1.41 16 28 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.09 1.25 5.56 -2.39 -0.01 1.23 16 30 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.37 8.04 -2.39 -0.02 1.35 16 33 H 0.09 2.58 7.92 -2.39 -0.02 2.56 16 34 H 0.10 2.57 3.62 -2.39 -0.01 2.57 16 35 H 0.05 2.44 7.09 -2.39 -0.02 2.42 16 36 H 0.02 0.86 6.81 -2.39 -0.02 0.85 16 37 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -79.78 287.74 3.61 -76.16 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 1.00 Total: 9.98 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 4.08 Total: -0.76 kcal Atomic # 7 Polarization: -84.94 SS G_CDS: -1.71 Total: -86.65 kcal Atomic # 8 Polarization: -43.91 SS G_CDS: -1.64 Total: -45.55 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.88 Total: 46.81 kcal Total: -79.78 3.61 -76.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711550010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.701 kcal (2) G-P(sol) polarization free energy of solvation -79.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds