Wall clock time and date at job start Mon Mar 30 2020 03:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00110 * 2 1 4 4 C 1.52995 * 109.47292 * 184.95047 * 3 2 1 5 5 N 1.46498 * 109.47407 * 66.43807 * 4 3 2 6 6 C 1.36943 * 120.00215 * 93.10280 * 5 4 3 7 7 H 1.08001 * 119.99579 * 347.86515 * 6 5 4 8 8 C 1.38809 * 120.00406 * 167.86754 * 6 5 4 9 9 N 1.31621 * 119.99708 * 5.52212 * 8 6 5 10 10 Si 1.86797 * 120.00114 * 185.53142 * 8 6 5 11 11 H 1.48500 * 109.47459 * 89.99530 * 10 8 6 12 12 H 1.48498 * 109.47143 * 209.99614 * 10 8 6 13 13 H 1.48498 * 109.47108 * 329.99707 * 10 8 6 14 14 C 1.46501 * 120.00060 * 273.10481 * 5 4 3 15 15 C 1.53001 * 109.46769 * 277.24703 * 14 5 4 16 16 C 1.54825 * 119.62289 * 192.61599 * 15 14 5 17 17 C 1.55229 * 81.33832 * 161.70112 * 16 15 14 18 18 C 1.55596 * 118.87459 * 290.84916 * 15 14 5 19 19 C 1.56786 * 101.25284 * 62.19369 * 17 16 15 20 20 O 1.45498 * 99.22462 * 316.81359 * 19 17 16 21 21 H 1.08998 * 109.46832 * 64.96149 * 1 2 3 22 22 H 1.08997 * 109.46979 * 184.95875 * 1 2 3 23 23 H 1.09000 * 109.47387 * 304.96379 * 1 2 3 24 24 H 1.08998 * 109.47415 * 64.94638 * 3 2 1 25 25 H 1.09003 * 109.46634 * 304.94793 * 3 2 1 26 26 H 1.09000 * 109.47247 * 186.44019 * 4 3 2 27 27 H 1.09005 * 109.47102 * 306.43848 * 4 3 2 28 28 H 0.97000 * 119.99772 * 180.02562 * 9 8 6 29 29 H 1.08989 * 109.47285 * 37.24937 * 14 5 4 30 30 H 1.08999 * 109.47071 * 157.25131 * 14 5 4 31 31 H 1.09004 * 114.55525 * 274.22769 * 16 15 14 32 32 H 1.09001 * 114.55870 * 48.00384 * 16 15 14 33 33 H 1.08999 * 121.31293 * 196.18392 * 17 16 15 34 34 H 1.09008 * 114.62917 * 311.30985 * 18 15 14 35 35 H 1.08993 * 114.63107 * 85.33539 * 18 15 14 36 36 H 1.08998 * 111.44976 * 199.30716 * 19 17 16 37 37 H 1.08996 * 111.49442 * 74.33176 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5305 1.1869 -0.1245 5 7 3.8718 0.6434 -1.4414 6 6 4.1433 1.4906 -2.4825 7 1 3.9187 2.5433 -2.3945 8 6 4.7070 0.9964 -3.6507 9 7 4.8804 -0.2997 -3.8006 10 14 5.2199 2.1708 -5.0098 11 1 6.6299 2.5863 -4.7991 12 1 5.0952 1.4913 -6.3243 13 1 4.3422 3.3684 -4.9864 14 6 3.9226 -0.8066 -1.6447 15 6 5.2800 -1.3392 -1.1814 16 6 5.7039 -2.7810 -1.5535 17 6 7.1028 -2.2111 -1.1958 18 6 6.5509 -0.9709 -2.0002 19 6 6.9075 -1.8480 0.3169 20 8 5.5889 -1.2377 0.2419 21 1 -0.3633 0.4349 -0.9311 22 1 -0.3633 -1.0238 0.0888 23 1 -0.3634 0.5889 0.8422 24 1 1.7605 1.8144 0.9309 25 1 1.6202 1.8768 -0.8424 26 1 3.9824 2.1721 -0.0098 27 1 3.9079 0.5215 0.6521 28 1 5.2747 -0.6450 -4.6168 29 1 3.1296 -1.2823 -1.0679 30 1 3.7865 -1.0301 -2.7028 31 1 5.3488 -3.5492 -0.8665 32 1 5.5641 -3.0376 -2.6037 33 1 8.0169 -2.7221 -1.4981 34 1 6.4590 -1.1251 -3.0754 35 1 7.0023 -0.0155 -1.7330 36 1 7.6584 -1.1342 0.6556 37 1 6.8989 -2.7396 0.9437 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716107286.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:04 Heat of formation + Delta-G solvation = 14.571325 kcal Electronic energy + Delta-G solvation = -18956.478734 eV Core-core repulsion = 16124.170674 eV Total energy + Delta-G solvation = -2832.308060 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.19220 -37.32255 -35.26586 -32.47842 -31.45001 -28.98204 -27.69305 -25.70803 -25.05694 -24.13580 -22.97658 -20.65596 -19.71579 -18.62407 -16.91516 -15.68743 -15.45660 -15.30251 -14.60742 -14.42322 -14.08359 -13.93774 -13.35352 -13.17101 -12.36925 -11.96401 -11.45813 -11.42317 -11.23524 -11.11773 -10.98549 -10.77709 -10.62154 -10.57930 -10.40066 -10.04583 -9.85630 -9.69122 -9.23439 -9.19317 -8.99100 -8.53871 -8.17602 -6.66348 -5.52128 -3.12488 3.38309 3.44857 3.45411 4.47697 4.52355 4.76819 5.15198 5.36230 5.40552 5.56194 5.64553 5.71801 5.77717 5.94999 6.01143 6.11241 6.12671 6.22301 6.27184 6.33936 6.36619 6.56550 6.61081 6.73537 6.91078 7.01239 7.14765 7.27713 7.48481 7.51385 7.75426 7.84860 7.90301 8.05893 8.64752 9.35227 9.93213 10.37029 11.26876 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.014965 B = 0.013487 C = 0.008149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.611563 B = 2075.554040 C = 3435.029222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.042 3.958 4 C 0.146 3.854 5 N -0.585 5.585 6 C -0.216 4.216 7 H 0.072 0.928 8 C -0.018 4.018 9 N -0.908 5.908 10 Si 0.911 3.089 11 H -0.291 1.291 12 H -0.292 1.292 13 H -0.284 1.284 14 C 0.173 3.827 15 C 0.086 3.914 16 C -0.158 4.158 17 C -0.197 4.197 18 C -0.100 4.100 19 C 0.051 3.949 20 O -0.373 6.373 21 H 0.034 0.966 22 H 0.075 0.925 23 H 0.028 0.972 24 H 0.028 0.972 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.249 0.751 29 H 0.018 0.982 30 H 0.164 0.836 31 H 0.047 0.953 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.136 0.864 35 H 0.043 0.957 36 H 0.058 0.942 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.424 -1.753 4.456 4.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.037 4.037 4 C 0.018 3.982 5 N -0.303 5.303 6 C -0.346 4.346 7 H 0.090 0.910 8 C -0.210 4.210 9 N -0.560 5.560 10 Si 0.743 3.257 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.210 1.210 14 C 0.047 3.953 15 C 0.045 3.955 16 C -0.197 4.197 17 C -0.216 4.216 18 C -0.137 4.137 19 C -0.026 4.026 20 O -0.293 6.293 21 H 0.053 0.947 22 H 0.094 0.906 23 H 0.047 0.953 24 H 0.046 0.954 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.036 0.964 30 H 0.179 0.821 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.154 0.846 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.416 -1.833 4.476 5.040 hybrid contribution 0.417 0.718 -0.521 0.980 sum -0.999 -1.115 3.955 4.229 Atomic orbital electron populations 1.22621 0.83278 1.01509 0.99002 1.88003 1.17740 1.28527 1.95071 1.23502 0.98384 0.84067 0.97722 1.20887 0.89672 0.98196 0.89422 1.43980 1.78966 1.02505 1.04890 1.19513 1.30989 0.91043 0.93017 0.91029 1.24703 1.01508 0.96110 0.98722 1.69568 1.50335 1.09949 1.26113 0.86102 0.78533 0.79834 0.81260 1.21816 1.21818 1.21022 1.21752 0.87240 0.81108 1.05163 1.25052 0.99462 0.92654 0.78328 1.24238 0.95923 0.98180 1.01312 1.25530 0.97402 1.03048 0.95599 1.24973 0.94136 0.93025 1.01615 1.23636 0.87220 0.96258 0.95502 1.89652 1.31792 1.81101 1.26775 0.94723 0.90625 0.95300 0.95407 0.93803 0.92424 0.92434 0.93829 0.96375 0.82068 0.93435 0.88898 0.89019 0.84634 0.93788 0.92341 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.37 -7.60 9.23 -35.23 -0.33 -7.92 16 3 C 0.04 0.83 6.28 37.15 0.23 1.06 16 4 C 0.15 3.20 6.10 -4.05 -0.02 3.18 16 5 N -0.59 -14.56 2.52 -173.24 -0.44 -15.00 16 6 C -0.22 -5.64 9.77 -15.06 -0.15 -5.79 16 7 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 8 C -0.02 -0.46 5.11 -17.43 -0.09 -0.55 16 9 N -0.91 -23.12 5.71 55.49 0.32 -22.81 16 10 Si 0.91 20.94 29.56 -169.99 -5.02 15.91 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 C 0.17 4.30 5.26 -4.04 -0.02 4.28 16 15 C 0.09 1.99 2.08 -96.75 -0.20 1.79 16 16 C -0.16 -3.23 7.40 -28.63 -0.21 -3.44 16 17 C -0.20 -3.82 6.52 -93.24 -0.61 -4.42 16 18 C -0.10 -2.27 6.24 -26.77 -0.17 -2.44 16 19 C 0.05 0.98 7.91 39.20 0.31 1.29 16 20 O -0.37 -8.71 10.81 -35.23 -0.38 -9.09 16 21 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.06 1.20 8.01 -51.93 -0.42 0.79 16 27 H 0.06 1.32 7.02 -51.93 -0.36 0.96 16 28 H 0.25 6.19 8.07 -40.82 -0.33 5.86 16 29 H 0.02 0.46 6.78 -51.94 -0.35 0.11 16 30 H 0.16 4.32 4.88 -67.18 -0.33 3.99 16 31 H 0.05 0.93 8.10 -51.93 -0.42 0.51 16 32 H 0.09 1.87 7.89 -51.93 -0.41 1.46 16 33 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 34 H 0.14 3.21 5.27 -51.92 -0.27 2.94 16 35 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 289.93 15.07 4.37 4.37 Total: -1.00 -27.41 289.93 -7.20 -34.61 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.90 Total: 3.33 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 0.19 Total: -3.41 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: -0.12 Total: -37.81 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.71 Total: -17.01 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.41 -7.20 -34.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716107286.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.180 kcal (2) G-P(sol) polarization free energy of solvation -27.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds