Wall clock time and date at job start Mon Mar 30 2020 03:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.46071 * 2 1 4 4 C 1.54378 * 110.41176 * 237.58954 * 2 1 3 5 5 H 1.08996 * 110.40910 * 336.30535 * 4 2 1 6 6 N 1.46901 * 110.32691 * 98.47391 * 4 2 1 7 7 C 1.46895 * 110.99816 * 202.09023 * 6 4 2 8 8 C 1.50706 * 109.47182 * 179.97438 * 7 6 4 9 9 O 1.21297 * 119.99667 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00081 * 179.72734 * 8 7 6 11 11 C 1.37095 * 119.99878 * 180.02562 * 10 8 7 12 12 H 1.08004 * 120.00160 * 359.97438 * 11 10 8 13 13 C 1.38950 * 120.00380 * 179.97438 * 11 10 8 14 14 N 1.31404 * 120.00261 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99599 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47644 * 89.99834 * 15 13 11 17 17 H 1.48506 * 109.47143 * 209.99780 * 15 13 11 18 18 H 1.48501 * 109.47120 * 329.99495 * 15 13 11 19 19 C 1.54264 * 105.05834 * 217.36783 * 4 2 1 20 20 C 1.54381 * 105.06127 * 359.97438 * 19 4 2 21 21 N 1.48555 * 104.59399 * 23.85241 * 20 19 4 22 22 C 1.46895 * 110.99985 * 200.95924 * 21 20 19 23 23 H 1.08988 * 109.47122 * 182.41386 * 1 2 3 24 24 H 1.09005 * 109.46778 * 302.41806 * 1 2 3 25 25 H 1.09007 * 109.46896 * 62.40970 * 1 2 3 26 26 H 1.00902 * 110.99849 * 326.04402 * 6 4 2 27 27 H 1.09001 * 109.47613 * 60.00104 * 7 6 4 28 28 H 1.08998 * 109.47678 * 300.00000 * 7 6 4 29 29 H 0.96998 * 120.00525 * 359.97438 * 10 8 7 30 30 H 0.97009 * 120.00065 * 180.02562 * 14 13 11 31 31 H 1.09004 * 110.32037 * 118.89718 * 19 4 2 32 32 H 1.08998 * 110.32242 * 241.00127 * 19 4 2 33 33 H 1.08999 * 110.40784 * 142.62978 * 20 19 4 34 34 H 1.09001 * 110.41169 * 264.95441 * 20 19 4 35 35 H 1.08998 * 109.47152 * 60.12501 * 22 21 20 36 36 H 1.09011 * 109.47445 * 180.12837 * 22 21 20 37 37 H 1.09003 * 109.47152 * 300.12038 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0684 -0.7755 -1.2215 5 1 1.3242 -1.4878 -1.5776 6 7 2.4366 0.1564 -2.2957 7 6 2.4451 -0.5202 -3.5995 8 6 2.8257 0.4652 -4.6744 9 8 3.0667 1.6176 -4.3828 10 7 2.9042 0.0645 -5.9588 11 6 3.2509 0.9608 -6.9365 12 1 3.4608 1.9881 -6.6775 13 6 3.3324 0.5476 -8.2607 14 7 3.6643 1.4069 -9.1978 15 14 2.9687 -1.2290 -8.7087 16 1 1.5225 -1.3772 -9.0111 17 1 3.7656 -1.6117 -9.9019 18 1 3.3291 -2.1106 -7.5693 19 6 3.3177 -1.5188 -0.7054 20 6 3.4294 -1.1293 0.7843 21 7 2.0486 -0.7455 1.1754 22 6 2.0577 0.1025 2.3748 23 1 -0.3633 -1.0266 0.0433 24 1 -0.3633 0.5510 0.8676 25 1 -0.3633 0.4760 -0.9109 26 1 1.8214 0.9561 -2.3073 27 1 1.4525 -0.9195 -3.8083 28 1 3.1682 -1.3356 -3.5812 29 1 2.7161 -0.8582 -6.1914 30 1 3.7208 1.1185 -10.1223 31 1 3.1860 -2.5961 -0.8067 32 1 4.2038 -1.1935 -1.2504 33 1 3.7693 -1.9799 1.3751 34 1 4.1094 -0.2863 0.9069 35 1 2.6271 1.0100 2.1739 36 1 1.0342 0.3672 2.6406 37 1 2.5185 -0.4404 3.2001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719595924.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:43 Heat of formation + Delta-G solvation = -24.357734 kcal Electronic energy + Delta-G solvation = -17450.624878 eV Core-core repulsion = 14648.921478 eV Total energy + Delta-G solvation = -2801.703400 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.55389 -38.27689 -35.04093 -33.86658 -31.67790 -31.51567 -30.90257 -27.10761 -25.19800 -24.85947 -23.45835 -20.77361 -20.12732 -19.32011 -18.28241 -16.62779 -15.74152 -15.39397 -15.26253 -14.74936 -14.68762 -14.25017 -13.76110 -13.53942 -13.11401 -12.93638 -12.66670 -12.50015 -12.20881 -11.89734 -11.73334 -11.53734 -11.31935 -11.28204 -11.13119 -10.98337 -10.58863 -10.56244 -9.97088 -9.56863 -8.67408 -8.57217 -8.19842 -8.14012 -6.30723 -3.82147 3.03428 3.07207 3.15489 3.72506 3.76696 4.10506 4.23619 4.50294 4.63065 4.88057 5.06252 5.13036 5.20047 5.22836 5.28649 5.30992 5.40585 5.59766 5.62365 5.66006 5.70256 5.73145 5.84243 5.91634 5.93319 6.03687 6.11341 6.15567 6.63748 6.86224 7.17961 7.58268 7.59636 8.15001 8.60387 8.95444 9.42993 9.83438 10.82430 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.047486 B = 0.004505 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.509644 B = 6214.058463 C = 6335.557563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.055 3.945 3 H 0.065 0.935 4 C 0.086 3.914 5 H 0.054 0.946 6 N -0.662 5.662 7 C 0.049 3.951 8 C 0.450 3.550 9 O -0.565 6.565 10 N -0.591 5.591 11 C -0.305 4.305 12 H 0.119 0.881 13 C 0.041 3.959 14 N -0.882 5.882 15 Si 0.880 3.120 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.269 1.269 19 C -0.119 4.119 20 C 0.035 3.965 21 N -0.512 5.512 22 C 0.014 3.986 23 H 0.063 0.937 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.350 0.650 27 H 0.045 0.955 28 H 0.087 0.913 29 H 0.371 0.629 30 H 0.273 0.727 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.046 0.954 35 H 0.029 0.971 36 H 0.067 0.933 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.872 -8.517 18.007 20.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.053 4.053 3 H 0.083 0.917 4 C -0.025 4.025 5 H 0.072 0.928 6 N -0.295 5.295 7 C -0.084 4.084 8 C 0.236 3.764 9 O -0.447 6.447 10 N -0.230 5.230 11 C -0.434 4.434 12 H 0.137 0.863 13 C -0.161 4.161 14 N -0.522 5.522 15 Si 0.706 3.294 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.195 1.195 19 C -0.157 4.157 20 C -0.093 4.093 21 N -0.236 5.236 22 C -0.135 4.135 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.171 0.829 27 H 0.063 0.937 28 H 0.105 0.895 29 H 0.203 0.797 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.086 0.914 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.327 -8.208 18.206 20.434 hybrid contribution -0.637 -0.770 -0.881 1.332 sum -4.964 -8.978 17.326 20.135 Atomic orbital electron populations 1.21739 0.93797 1.02432 1.01606 1.22807 0.95815 0.96680 0.90031 0.91740 1.22306 0.95681 0.93699 0.90820 0.92778 1.60249 1.58299 1.09064 1.01897 1.21741 1.00348 0.96962 0.89376 1.19724 0.84447 0.89287 0.82967 1.90564 1.53254 1.19429 1.81463 1.42205 1.63006 1.11124 1.06677 1.19435 1.43572 0.94837 0.85563 0.86305 1.25036 0.97555 0.98115 0.95441 1.69622 1.47091 1.34344 1.01115 0.86669 0.79178 0.84529 0.79011 1.19648 1.20159 1.19453 1.22411 0.99012 0.99646 0.94649 1.23077 0.89724 1.00216 0.96277 1.65324 1.18389 1.36973 1.02940 1.22505 1.01903 0.95671 0.93448 0.91808 0.92645 0.92159 0.82947 0.93690 0.89486 0.79678 0.91617 0.91408 0.89786 0.90393 0.93521 0.95211 0.91375 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.32 37.16 0.35 -1.05 16 2 C 0.06 0.64 2.34 -66.09 -0.15 0.49 16 3 H 0.06 0.82 7.77 -51.93 -0.40 0.42 16 4 C 0.09 1.08 2.93 -66.33 -0.19 0.89 16 5 H 0.05 0.67 7.58 -51.93 -0.39 0.27 16 6 N -0.66 -10.41 5.81 -106.53 -0.62 -11.03 16 7 C 0.05 0.81 6.00 -4.98 -0.03 0.78 16 8 C 0.45 10.30 7.82 -10.98 -0.09 10.21 16 9 O -0.57 -15.31 15.78 5.54 0.09 -15.22 16 10 N -0.59 -14.17 5.09 -10.96 -0.06 -14.23 16 11 C -0.31 -8.70 10.16 -14.93 -0.15 -8.85 16 12 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 13 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 14 N -0.88 -25.88 13.96 55.50 0.77 -25.10 16 15 Si 0.88 19.43 27.74 -169.99 -4.71 14.71 16 16 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.27 -5.42 6.52 56.52 0.37 -5.06 16 19 C -0.12 -1.40 6.70 -25.35 -0.17 -1.57 16 20 C 0.04 0.38 6.49 -2.18 -0.01 0.36 16 21 N -0.51 -5.61 5.34 -230.37 -1.23 -6.84 16 22 C 0.01 0.12 9.42 60.06 0.57 0.69 16 23 H 0.06 0.64 8.14 -51.94 -0.42 0.22 16 24 H 0.05 0.51 7.65 -51.93 -0.40 0.11 16 25 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 26 H 0.35 5.72 8.11 -39.29 -0.32 5.40 16 27 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 28 H 0.09 1.33 8.11 -51.93 -0.42 0.91 16 29 H 0.37 7.80 5.76 -40.82 -0.24 7.56 16 30 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.11 7.95 -51.93 -0.41 0.69 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.52 7.98 -51.93 -0.41 0.11 16 35 H 0.03 0.28 7.97 -51.93 -0.41 -0.14 16 36 H 0.07 0.57 7.62 -51.92 -0.40 0.17 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 302.08 15.07 4.55 4.55 Total: -1.00 -31.87 302.08 -7.08 -38.96 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -5.89 Total: 11.20 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 0.02 Total: 3.00 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -1.13 Total: -57.21 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.09 Total: -15.22 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.71 Total: 14.71 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.87 -7.08 -38.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719595924.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.600 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds