Wall clock time and date at job start Mon Mar 30 2020 03:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.46071 * 2 1 4 4 C 1.54378 * 110.41176 * 237.58954 * 2 1 3 5 5 H 1.08996 * 110.40910 * 336.30535 * 4 2 1 6 6 N 1.46901 * 110.32691 * 98.47391 * 4 2 1 7 7 C 1.46895 * 110.99816 * 202.09023 * 6 4 2 8 8 C 1.50706 * 109.47182 * 179.97438 * 7 6 4 9 9 O 1.21297 * 119.99667 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00081 * 179.72734 * 8 7 6 11 11 C 1.37095 * 119.99878 * 180.02562 * 10 8 7 12 12 H 1.08004 * 120.00160 * 359.97438 * 11 10 8 13 13 C 1.38950 * 120.00380 * 179.97438 * 11 10 8 14 14 N 1.31404 * 120.00261 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99599 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47644 * 89.99834 * 15 13 11 17 17 H 1.48506 * 109.47143 * 209.99780 * 15 13 11 18 18 H 1.48501 * 109.47120 * 329.99495 * 15 13 11 19 19 C 1.54264 * 105.05834 * 217.36783 * 4 2 1 20 20 C 1.54381 * 105.06127 * 359.97438 * 19 4 2 21 21 N 1.48555 * 104.59399 * 23.85241 * 20 19 4 22 22 C 1.46895 * 110.99985 * 200.95924 * 21 20 19 23 23 H 1.08988 * 109.47122 * 182.41386 * 1 2 3 24 24 H 1.09005 * 109.46778 * 302.41806 * 1 2 3 25 25 H 1.09007 * 109.46896 * 62.40970 * 1 2 3 26 26 H 1.00902 * 110.99849 * 326.04402 * 6 4 2 27 27 H 1.09001 * 109.47613 * 60.00104 * 7 6 4 28 28 H 1.08998 * 109.47678 * 300.00000 * 7 6 4 29 29 H 0.96998 * 120.00525 * 359.97438 * 10 8 7 30 30 H 0.97009 * 120.00065 * 180.02562 * 14 13 11 31 31 H 1.09004 * 110.32037 * 118.89718 * 19 4 2 32 32 H 1.08998 * 110.32242 * 241.00127 * 19 4 2 33 33 H 1.08999 * 110.40784 * 142.62978 * 20 19 4 34 34 H 1.09001 * 110.41169 * 264.95441 * 20 19 4 35 35 H 1.08998 * 109.47152 * 60.12501 * 22 21 20 36 36 H 1.09011 * 109.47445 * 180.12837 * 22 21 20 37 37 H 1.09003 * 109.47152 * 300.12038 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0684 -0.7755 -1.2215 5 1 1.3242 -1.4878 -1.5776 6 7 2.4366 0.1564 -2.2957 7 6 2.4451 -0.5202 -3.5995 8 6 2.8257 0.4652 -4.6744 9 8 3.0667 1.6176 -4.3828 10 7 2.9042 0.0645 -5.9588 11 6 3.2509 0.9608 -6.9365 12 1 3.4608 1.9881 -6.6775 13 6 3.3324 0.5476 -8.2607 14 7 3.6643 1.4069 -9.1978 15 14 2.9687 -1.2290 -8.7087 16 1 1.5225 -1.3772 -9.0111 17 1 3.7656 -1.6117 -9.9019 18 1 3.3291 -2.1106 -7.5693 19 6 3.3177 -1.5188 -0.7054 20 6 3.4294 -1.1293 0.7843 21 7 2.0486 -0.7455 1.1754 22 6 2.0577 0.1025 2.3748 23 1 -0.3633 -1.0266 0.0433 24 1 -0.3633 0.5510 0.8676 25 1 -0.3633 0.4760 -0.9109 26 1 1.8214 0.9561 -2.3073 27 1 1.4525 -0.9195 -3.8083 28 1 3.1682 -1.3356 -3.5812 29 1 2.7161 -0.8582 -6.1914 30 1 3.7208 1.1185 -10.1223 31 1 3.1860 -2.5961 -0.8067 32 1 4.2038 -1.1935 -1.2504 33 1 3.7693 -1.9799 1.3751 34 1 4.1094 -0.2863 0.9069 35 1 2.6271 1.0100 2.1739 36 1 1.0342 0.3672 2.6406 37 1 2.5185 -0.4404 3.2001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719595924.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:42 Heat of formation + Delta-G solvation = -50.887086 kcal Electronic energy + Delta-G solvation = -17451.775277 eV Core-core repulsion = 14648.921478 eV Total energy + Delta-G solvation = -2802.853799 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.65272 -39.95529 -36.38758 -35.73608 -33.76015 -32.36162 -31.94334 -28.57998 -26.33324 -25.98304 -24.84788 -21.78646 -21.21387 -21.06274 -20.18236 -18.00186 -17.17035 -16.83062 -16.40773 -16.17749 -15.90303 -15.45708 -14.99778 -14.88400 -14.49185 -14.40016 -14.15289 -13.72206 -13.37929 -13.20837 -12.95200 -12.77407 -12.42488 -12.37254 -12.18621 -12.09260 -11.97994 -11.91296 -11.52074 -11.47344 -10.44824 -10.25957 -9.52509 -9.37733 -8.41936 -6.03179 1.30773 1.35667 1.44991 1.94186 2.22974 2.62478 3.05426 3.14570 3.47605 3.56538 3.78768 4.13248 4.16672 4.26259 4.36963 4.42813 4.47809 4.50559 4.53313 4.60444 4.82494 4.85064 4.88949 4.98497 5.06058 5.15568 5.19090 5.32148 5.51770 5.74605 5.91919 6.03297 6.11300 6.36128 6.58920 6.86950 7.38563 7.95005 8.75744 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.047486 B = 0.004505 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.509644 B = 6214.058463 C = 6335.557563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 H 0.046 0.954 4 C 0.086 3.914 5 H 0.067 0.933 6 N -0.678 5.678 7 C 0.064 3.936 8 C 0.448 3.552 9 O -0.615 6.615 10 N -0.590 5.590 11 C -0.331 4.331 12 H 0.054 0.946 13 C -0.014 4.014 14 N -0.934 5.934 15 Si 0.965 3.035 16 H -0.256 1.256 17 H -0.275 1.275 18 H -0.231 1.231 19 C -0.118 4.118 20 C 0.035 3.965 21 N -0.514 5.514 22 C 0.012 3.988 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.344 0.656 27 H 0.078 0.922 28 H 0.112 0.888 29 H 0.390 0.610 30 H 0.280 0.720 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.036 0.964 35 H 0.022 0.978 36 H 0.076 0.924 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.994 -12.088 19.178 23.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.053 4.053 3 H 0.064 0.936 4 C -0.024 4.024 5 H 0.085 0.915 6 N -0.311 5.311 7 C -0.069 4.069 8 C 0.236 3.764 9 O -0.500 6.500 10 N -0.231 5.231 11 C -0.460 4.460 12 H 0.073 0.927 13 C -0.213 4.213 14 N -0.575 5.575 15 Si 0.785 3.215 16 H -0.180 1.180 17 H -0.200 1.200 18 H -0.154 1.154 19 C -0.157 4.157 20 C -0.092 4.092 21 N -0.238 5.238 22 C -0.136 4.136 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.163 0.837 27 H 0.096 0.904 28 H 0.130 0.870 29 H 0.226 0.774 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.055 0.945 35 H 0.041 0.959 36 H 0.095 0.905 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.452 -11.797 19.413 23.362 hybrid contribution -0.256 0.484 -1.168 1.290 sum -5.708 -11.313 18.246 22.214 Atomic orbital electron populations 1.21697 0.92569 1.02825 1.01959 1.22779 0.96763 0.95648 0.90082 0.93561 1.22392 0.96466 0.93388 0.90106 0.91514 1.60255 1.58918 1.09728 1.02226 1.21654 1.02554 0.95221 0.87431 1.20968 0.82023 0.89706 0.83662 1.90544 1.54809 1.22267 1.82376 1.42020 1.63452 1.11326 1.06329 1.19014 1.45898 0.93445 0.87645 0.92748 1.26126 0.96232 1.04570 0.94375 1.69804 1.48057 1.37712 1.01899 0.85358 0.79608 0.76816 0.79701 1.18031 1.19983 1.15447 1.22417 0.97818 1.00486 0.94948 1.23102 0.89619 1.00484 0.96041 1.65375 1.18296 1.37095 1.03066 1.22566 1.02542 0.95371 0.93129 0.91324 0.91836 0.92314 0.83711 0.90378 0.87044 0.77421 0.91099 0.89695 0.91422 0.88711 0.94519 0.95902 0.90515 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 9.32 71.98 0.67 -1.73 16 2 C 0.06 1.21 2.34 45.07 0.11 1.32 16 3 H 0.05 1.17 7.77 -2.39 -0.02 1.15 16 4 C 0.09 1.98 2.93 45.81 0.13 2.12 16 5 H 0.07 1.40 7.58 -2.39 -0.02 1.38 16 6 N -0.68 -20.47 5.81 -490.95 -2.85 -23.32 16 7 C 0.06 1.97 6.00 85.56 0.51 2.49 16 8 C 0.45 20.46 7.82 87.66 0.69 21.14 16 9 O -0.62 -34.60 15.78 -3.08 -0.05 -34.65 16 10 N -0.59 -27.99 5.09 -306.98 -1.56 -29.55 16 11 C -0.33 -19.55 10.16 84.04 0.85 -18.69 16 12 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 13 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 14 N -0.93 -56.56 13.96 21.66 0.30 -56.26 16 15 Si 0.97 38.73 27.74 68.60 1.90 40.64 16 16 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 17 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 18 H -0.23 -7.81 6.52 99.48 0.65 -7.16 16 19 C -0.12 -2.51 6.70 31.49 0.21 -2.30 16 20 C 0.04 0.69 6.49 86.45 0.56 1.25 16 21 N -0.51 -10.15 5.34 -882.76 -4.71 -14.86 16 22 C 0.01 0.21 9.42 127.69 1.20 1.41 16 23 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.06 1.03 7.65 -2.38 -0.02 1.02 16 25 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.34 11.11 8.11 -89.69 -0.73 10.39 16 27 H 0.08 1.97 8.08 -2.39 -0.02 1.95 16 28 H 0.11 2.98 8.11 -2.39 -0.02 2.96 16 29 H 0.39 15.26 5.76 -92.71 -0.53 14.72 16 30 H 0.28 15.43 8.31 -92.70 -0.77 14.66 16 31 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.07 1.67 7.95 -2.39 -0.02 1.65 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.04 0.78 7.98 -2.39 -0.02 0.76 16 35 H 0.02 0.40 7.97 -2.39 -0.02 0.39 16 36 H 0.08 1.12 7.62 -2.38 -0.02 1.11 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -73.63 302.08 -1.82 -75.46 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: -0.26 Total: 35.87 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 5.41 Total: 6.67 kcal Atomic # 7 Polarization: -115.16 SS G_CDS: -8.82 Total: -123.99 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -0.05 Total: -34.65 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 1.90 Total: 40.64 kcal Total: -73.63 -1.82 -75.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719595924.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.569 kcal (2) G-P(sol) polarization free energy of solvation -73.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds