Wall clock time and date at job start Mon Mar 30 2020 03:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47270 * 2 1 4 4 C 1.53008 * 109.47179 * 119.99894 * 2 1 3 5 5 C 1.50697 * 109.46958 * 183.46651 * 4 2 1 6 6 H 1.08003 * 120.00261 * 4.99680 * 5 4 2 7 7 C 1.37880 * 120.00039 * 184.99644 * 5 4 2 8 8 N 1.31524 * 119.99472 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00385 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46819 * 90.00254 * 9 7 5 11 11 H 1.48496 * 109.47329 * 209.99930 * 9 7 5 12 12 H 1.48497 * 109.47012 * 330.00223 * 9 7 5 13 13 N 1.46904 * 109.46882 * 239.99536 * 2 1 3 14 14 C 1.46899 * 110.99855 * 70.44414 * 13 2 1 15 15 C 1.53240 * 109.33993 * 172.74473 * 14 13 2 16 16 N 1.47079 * 108.52206 * 53.82593 * 15 14 13 17 17 C 1.34775 * 120.87831 * 128.83374 * 16 15 14 18 18 N 1.34779 * 120.00219 * 4.93988 * 17 16 15 19 19 O 1.21582 * 120.00118 * 184.93468 * 17 16 15 20 20 C 1.47081 * 118.23896 * 308.81811 * 16 15 14 21 21 C 1.46890 * 111.00420 * 306.13898 * 13 2 1 22 22 H 1.09002 * 109.47045 * 300.00067 * 1 2 3 23 23 H 1.09000 * 109.47270 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47064 * 59.99784 * 1 2 3 25 25 H 1.08996 * 109.46820 * 303.46996 * 4 2 1 26 26 H 1.08999 * 109.46909 * 63.46499 * 4 2 1 27 27 H 0.97003 * 119.99270 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.49385 * 292.70756 * 14 13 2 29 29 H 1.08999 * 109.49245 * 52.78348 * 14 13 2 30 30 H 1.09006 * 109.62459 * 294.11739 * 15 14 13 31 31 H 1.08999 * 109.62521 * 173.53802 * 15 14 13 32 32 H 0.97007 * 119.99754 * 355.01804 * 18 17 16 33 33 H 0.96994 * 120.00149 * 175.02610 * 18 17 16 34 34 H 1.08995 * 109.62650 * 291.47396 * 20 16 15 35 35 H 1.08998 * 109.62403 * 170.89010 * 20 16 15 36 36 H 1.09003 * 109.49402 * 307.21870 * 21 13 2 37 37 H 1.08999 * 109.49227 * 67.26639 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5445 -0.6473 1.2930 6 1 4.0785 -0.0691 0.5533 7 6 4.2395 -1.3177 2.2772 8 7 3.5892 -2.0221 3.1776 9 14 6.1045 -1.2266 2.3310 10 1 6.5197 -0.0737 3.1699 11 1 6.6448 -2.4817 2.9123 12 1 6.6314 -1.0519 0.9537 13 7 2.0196 -0.6926 -1.1994 14 6 1.7622 0.1018 -2.4080 15 6 2.4441 -0.5642 -3.6078 16 7 2.0015 -1.9651 -3.6784 17 6 1.5180 -2.4807 -4.8259 18 7 1.5273 -1.7421 -5.9533 19 8 1.0735 -3.6122 -4.8442 20 6 2.1009 -2.7884 -2.4637 21 6 1.4326 -2.0347 -1.3089 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 1.6268 -0.2446 2.1381 26 1 1.7283 -1.7653 1.2188 27 1 4.0782 -2.4940 3.8698 28 1 0.6881 0.1576 -2.5847 29 1 2.1619 1.1071 -2.2743 30 1 3.5261 -0.5280 -3.4807 31 1 2.1626 -0.0447 -4.5238 32 1 1.8144 -0.8160 -5.9240 33 1 1.2468 -2.1366 -6.7939 34 1 3.1498 -2.9659 -2.2266 35 1 1.5925 -3.7392 -2.6233 36 1 1.5930 -2.5789 -0.3782 37 1 0.3630 -1.9493 -1.5005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722154365.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:12 Heat of formation + Delta-G solvation = -19.086107 kcal Electronic energy + Delta-G solvation = -18268.143620 eV Core-core repulsion = 15466.668815 eV Total energy + Delta-G solvation = -2801.474805 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.19461 -38.22134 -35.23149 -33.68473 -32.64007 -30.91831 -30.34972 -27.35582 -26.21795 -23.59034 -23.14447 -21.69329 -19.83293 -18.92995 -17.90753 -16.90037 -16.17030 -15.53692 -15.10550 -14.78795 -14.58189 -14.29899 -14.03673 -13.79242 -13.06119 -12.94596 -12.24716 -12.04352 -11.76473 -11.66547 -11.36009 -11.11831 -10.81615 -10.60710 -10.51569 -10.41969 -10.07684 -9.97740 -9.70722 -9.23169 -8.99893 -8.48232 -8.27101 -7.53160 -5.89920 -3.87846 2.89535 3.26972 3.38085 3.44913 3.48934 4.12712 4.42426 4.55575 5.06394 5.19129 5.29021 5.47501 5.52647 5.65991 5.69676 5.81650 5.89164 5.92507 6.02239 6.03759 6.29562 6.35516 6.45909 6.55605 6.68523 6.85506 6.93102 6.94715 7.47664 7.61450 7.83961 7.91847 7.97280 8.10345 8.55265 8.66690 9.17295 9.73829 11.21993 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027591 B = 0.006613 C = 0.006082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.576152 B = 4233.364065 C = 4602.975654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.070 0.930 4 C 0.029 3.971 5 C -0.489 4.489 6 H 0.059 0.941 7 C 0.051 3.949 8 N -0.903 5.903 9 Si 0.889 3.111 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.507 5.507 14 C 0.038 3.962 15 C 0.117 3.883 16 N -0.625 5.625 17 C 0.707 3.293 18 N -0.872 5.872 19 O -0.600 6.600 20 C 0.133 3.867 21 C 0.043 3.957 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.038 0.962 25 H 0.016 0.984 26 H 0.023 0.977 27 H 0.257 0.743 28 H 0.029 0.971 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.395 0.605 33 H 0.410 0.590 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.977 4.648 -14.437 15.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.020 4.020 3 H 0.088 0.912 4 C -0.008 4.008 5 C -0.528 4.528 6 H 0.077 0.923 7 C -0.148 4.148 8 N -0.544 5.544 9 Si 0.718 3.282 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.199 1.199 13 N -0.231 5.231 14 C -0.091 4.091 15 C -0.006 4.006 16 N -0.363 5.363 17 C 0.407 3.593 18 N -0.442 5.442 19 O -0.479 6.479 20 C 0.010 3.990 21 C -0.086 4.086 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.034 0.966 26 H 0.041 0.959 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.225 0.775 33 H 0.241 0.759 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.119 0.881 37 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -3.680 3.717 -14.069 15.010 hybrid contribution 0.195 0.538 -0.294 0.644 sum -3.485 4.255 -14.363 15.380 Atomic orbital electron populations 1.22522 0.99689 1.01436 1.00600 1.21934 0.90065 0.98247 0.91791 0.91219 1.19213 0.96431 0.95544 0.89618 1.21116 0.91452 1.29136 1.11051 0.92265 1.24996 0.97990 0.95835 0.96004 1.69965 1.35179 1.32924 1.16333 0.86640 0.86455 0.77103 0.78026 1.21072 1.21577 1.19948 1.62057 1.58379 1.01666 1.00994 1.22447 0.97748 0.97720 0.91225 1.21754 1.00256 0.80949 0.97669 1.47390 1.66312 1.12501 1.10084 1.15883 0.78476 0.84235 0.80694 1.43149 1.75153 1.16001 1.09915 1.90931 1.53234 1.18796 1.84964 1.21708 1.01969 0.93862 0.81450 1.22500 0.95397 0.91361 0.99335 0.92493 0.92794 0.94321 0.96619 0.95862 0.93296 0.95272 0.90019 0.90347 0.91052 0.77517 0.75858 0.90516 0.89133 0.88055 0.95307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.06 8.45 37.16 0.31 -2.74 16 2 C 0.09 1.68 2.27 -67.71 -0.15 1.53 16 3 H 0.07 1.35 7.96 -51.93 -0.41 0.93 16 4 C 0.03 0.71 4.36 -27.88 -0.12 0.59 16 5 C -0.49 -13.22 8.80 -34.44 -0.30 -13.53 16 6 H 0.06 1.59 7.75 -52.48 -0.41 1.19 16 7 C 0.05 1.44 5.46 -17.81 -0.10 1.34 16 8 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 9 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.51 -9.02 4.25 -226.34 -0.96 -9.98 16 14 C 0.04 0.53 5.26 -3.70 -0.02 0.51 16 15 C 0.12 1.40 6.54 -3.60 -0.02 1.38 16 16 N -0.62 -9.04 3.01 -178.19 -0.54 -9.57 16 17 C 0.71 10.48 8.58 -86.92 -0.75 9.73 16 18 N -0.87 -8.47 8.78 27.63 0.24 -8.22 16 19 O -0.60 -11.38 16.63 5.29 0.09 -11.29 16 20 C 0.13 2.18 6.61 -3.60 -0.02 2.15 16 21 C 0.04 0.75 4.65 -3.71 -0.02 0.73 16 22 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.05 0.92 6.49 -51.93 -0.34 0.58 16 24 H 0.04 0.57 6.86 -51.93 -0.36 0.22 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.02 0.61 6.27 -51.93 -0.33 0.28 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.03 0.41 6.96 -51.93 -0.36 0.04 16 29 H 0.08 1.05 7.98 -51.93 -0.41 0.63 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.59 5.73 -51.93 -0.30 0.29 16 32 H 0.39 2.75 6.37 -40.82 -0.26 2.49 16 33 H 0.41 3.34 8.93 -40.82 -0.36 2.97 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.09 1.52 7.04 -51.93 -0.37 1.16 16 36 H 0.10 2.01 6.12 -51.93 -0.32 1.69 16 37 H 0.03 0.50 6.67 -51.93 -0.35 0.15 16 LS Contribution 289.81 15.07 4.37 4.37 Total: -1.00 -32.54 289.81 -7.67 -40.20 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.39 Total: 2.19 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -1.19 Total: 1.69 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.52 Total: -53.79 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.54 -7.67 -40.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722154365.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.119 kcal (2) G-P(sol) polarization free energy of solvation -32.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds