Wall clock time and date at job start Mon Mar 30 2020 03:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47270 * 2 1 4 4 C 1.53008 * 109.47179 * 119.99894 * 2 1 3 5 5 C 1.50697 * 109.46958 * 183.46651 * 4 2 1 6 6 H 1.08003 * 120.00261 * 4.99680 * 5 4 2 7 7 C 1.37880 * 120.00039 * 184.99644 * 5 4 2 8 8 N 1.31524 * 119.99472 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00385 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46819 * 90.00254 * 9 7 5 11 11 H 1.48496 * 109.47329 * 209.99930 * 9 7 5 12 12 H 1.48497 * 109.47012 * 330.00223 * 9 7 5 13 13 N 1.46904 * 109.46882 * 239.99536 * 2 1 3 14 14 C 1.46899 * 110.99855 * 70.44414 * 13 2 1 15 15 C 1.53240 * 109.33993 * 172.74473 * 14 13 2 16 16 N 1.47079 * 108.52206 * 53.82593 * 15 14 13 17 17 C 1.34775 * 120.87831 * 128.83374 * 16 15 14 18 18 N 1.34779 * 120.00219 * 4.93988 * 17 16 15 19 19 O 1.21582 * 120.00118 * 184.93468 * 17 16 15 20 20 C 1.47081 * 118.23896 * 308.81811 * 16 15 14 21 21 C 1.46890 * 111.00420 * 306.13898 * 13 2 1 22 22 H 1.09002 * 109.47045 * 300.00067 * 1 2 3 23 23 H 1.09000 * 109.47270 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47064 * 59.99784 * 1 2 3 25 25 H 1.08996 * 109.46820 * 303.46996 * 4 2 1 26 26 H 1.08999 * 109.46909 * 63.46499 * 4 2 1 27 27 H 0.97003 * 119.99270 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.49385 * 292.70756 * 14 13 2 29 29 H 1.08999 * 109.49245 * 52.78348 * 14 13 2 30 30 H 1.09006 * 109.62459 * 294.11739 * 15 14 13 31 31 H 1.08999 * 109.62521 * 173.53802 * 15 14 13 32 32 H 0.97007 * 119.99754 * 355.01804 * 18 17 16 33 33 H 0.96994 * 120.00149 * 175.02610 * 18 17 16 34 34 H 1.08995 * 109.62650 * 291.47396 * 20 16 15 35 35 H 1.08998 * 109.62403 * 170.89010 * 20 16 15 36 36 H 1.09003 * 109.49402 * 307.21870 * 21 13 2 37 37 H 1.08999 * 109.49227 * 67.26639 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5445 -0.6473 1.2930 6 1 4.0785 -0.0691 0.5533 7 6 4.2395 -1.3177 2.2772 8 7 3.5892 -2.0221 3.1776 9 14 6.1045 -1.2266 2.3310 10 1 6.5197 -0.0737 3.1699 11 1 6.6448 -2.4817 2.9123 12 1 6.6314 -1.0519 0.9537 13 7 2.0196 -0.6926 -1.1994 14 6 1.7622 0.1018 -2.4080 15 6 2.4441 -0.5642 -3.6078 16 7 2.0015 -1.9651 -3.6784 17 6 1.5180 -2.4807 -4.8259 18 7 1.5273 -1.7421 -5.9533 19 8 1.0735 -3.6122 -4.8442 20 6 2.1009 -2.7884 -2.4637 21 6 1.4326 -2.0347 -1.3089 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 1.6268 -0.2446 2.1381 26 1 1.7283 -1.7653 1.2188 27 1 4.0782 -2.4940 3.8698 28 1 0.6881 0.1576 -2.5847 29 1 2.1619 1.1071 -2.2743 30 1 3.5261 -0.5280 -3.4807 31 1 2.1626 -0.0447 -4.5238 32 1 1.8144 -0.8160 -5.9240 33 1 1.2468 -2.1366 -6.7939 34 1 3.1498 -2.9659 -2.2266 35 1 1.5925 -3.7392 -2.6233 36 1 1.5930 -2.5789 -0.3782 37 1 0.3630 -1.9493 -1.5005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722154365.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:11 Heat of formation + Delta-G solvation = -44.163264 kcal Electronic energy + Delta-G solvation = -18269.231047 eV Core-core repulsion = 15466.668815 eV Total energy + Delta-G solvation = -2802.562232 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.37286 -39.56563 -36.60897 -34.92134 -34.44843 -32.28063 -31.70570 -29.19763 -27.47569 -25.16862 -24.70639 -23.00150 -21.18579 -20.13108 -19.08426 -18.31213 -17.93784 -16.84028 -16.50202 -16.36990 -15.91708 -15.68234 -15.32987 -15.07790 -14.59832 -14.25898 -13.80414 -13.67263 -13.32179 -13.02794 -12.97102 -12.62467 -12.40805 -12.35825 -12.11877 -11.95075 -11.65600 -11.36261 -11.06466 -10.94601 -10.70743 -10.43828 -9.66928 -8.89927 -8.05795 -6.09942 1.44832 1.46215 1.56743 1.80097 2.12948 2.50842 3.08575 3.24389 3.31678 3.98455 4.07027 4.11391 4.26931 4.33875 4.37751 4.54284 4.57910 4.62805 4.78347 4.85071 4.95031 5.01540 5.10171 5.20879 5.29294 5.43402 5.52093 5.72144 5.89461 5.93707 6.03161 6.31071 6.41878 6.53499 6.94110 7.04075 7.55765 7.62139 9.06319 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027591 B = 0.006613 C = 0.006082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.576152 B = 4233.364065 C = 4602.975654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.097 3.903 3 H 0.075 0.925 4 C 0.033 3.967 5 C -0.492 4.492 6 H 0.061 0.939 7 C -0.006 4.006 8 N -0.942 5.942 9 Si 0.954 3.046 10 H -0.277 1.277 11 H -0.292 1.292 12 H -0.265 1.265 13 N -0.525 5.525 14 C 0.037 3.963 15 C 0.118 3.882 16 N -0.626 5.626 17 C 0.703 3.297 18 N -0.845 5.845 19 O -0.647 6.647 20 C 0.141 3.859 21 C 0.054 3.946 22 H 0.057 0.943 23 H 0.044 0.956 24 H 0.065 0.935 25 H -0.011 1.011 26 H -0.003 1.003 27 H 0.257 0.743 28 H 0.037 0.963 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.117 0.883 32 H 0.412 0.588 33 H 0.421 0.579 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.441 6.506 -16.772 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.012 4.012 3 H 0.093 0.907 4 C -0.004 4.004 5 C -0.530 4.530 6 H 0.080 0.920 7 C -0.201 4.201 8 N -0.585 5.585 9 Si 0.781 3.219 10 H -0.203 1.203 11 H -0.218 1.218 12 H -0.189 1.189 13 N -0.249 5.249 14 C -0.091 4.091 15 C -0.004 4.004 16 N -0.363 5.363 17 C 0.402 3.598 18 N -0.417 5.417 19 O -0.530 6.530 20 C 0.017 3.983 21 C -0.075 4.075 22 H 0.076 0.924 23 H 0.063 0.937 24 H 0.084 0.916 25 H 0.008 0.992 26 H 0.016 0.984 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.117 0.883 30 H 0.096 0.904 31 H 0.135 0.865 32 H 0.245 0.755 33 H 0.254 0.746 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.134 5.643 -16.456 17.676 hybrid contribution 0.003 -0.008 0.405 0.405 sum -3.131 5.635 -16.051 17.297 Atomic orbital electron populations 1.22385 0.97595 1.01269 1.01966 1.21632 0.91689 0.97482 0.90348 0.90726 1.19085 0.95382 0.94459 0.91497 1.21459 0.92830 1.28250 1.10494 0.92030 1.25834 1.02679 0.95759 0.95871 1.70106 1.36946 1.34185 1.17221 0.85600 0.80925 0.76994 0.78393 1.20293 1.21803 1.18903 1.61941 1.58873 1.01984 1.02129 1.22584 0.98629 0.98065 0.89854 1.21953 1.00086 0.79502 0.98875 1.47349 1.66295 1.13330 1.09348 1.16074 0.78187 0.83941 0.81565 1.42871 1.73704 1.16384 1.08732 1.90905 1.55243 1.21084 1.85747 1.21418 1.00926 0.93793 0.82183 1.22278 0.95666 0.91377 0.98163 0.92379 0.93737 0.91624 0.99250 0.98441 0.93456 0.94525 0.88256 0.90377 0.86518 0.75505 0.74612 0.91553 0.90119 0.91512 0.95005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.57 8.45 71.98 0.61 -4.96 16 2 C 0.10 3.67 2.27 44.92 0.10 3.77 16 3 H 0.07 2.76 7.96 -2.39 -0.02 2.74 16 4 C 0.03 1.66 4.36 29.85 0.13 1.79 16 5 C -0.49 -26.89 8.80 25.60 0.23 -26.66 16 6 H 0.06 3.28 7.75 -2.91 -0.02 3.25 16 7 C -0.01 -0.33 5.46 84.65 0.46 0.14 16 8 N -0.94 -57.34 13.29 21.45 0.28 -57.05 16 9 Si 0.95 44.66 29.54 68.60 2.03 46.68 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 12 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 13 N -0.53 -18.09 4.25 -870.02 -3.69 -21.79 16 14 C 0.04 0.91 5.26 86.38 0.45 1.36 16 15 C 0.12 2.39 6.54 86.35 0.56 2.95 16 16 N -0.63 -16.84 3.01 -835.94 -2.52 -19.36 16 17 C 0.70 19.32 8.58 179.05 1.54 20.86 16 18 N -0.85 -13.40 8.78 -184.75 -1.62 -15.03 16 19 O -0.65 -24.07 16.63 -3.97 -0.07 -24.14 16 20 C 0.14 4.62 6.61 86.35 0.57 5.19 16 21 C 0.05 1.92 4.65 86.38 0.40 2.32 16 22 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.04 1.50 6.49 -2.39 -0.02 1.49 16 24 H 0.06 1.76 6.86 -2.39 -0.02 1.74 16 25 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 26 H 0.00 -0.15 6.27 -2.39 -0.01 -0.16 16 27 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 28 H 0.04 0.87 6.96 -2.39 -0.02 0.85 16 29 H 0.10 2.12 7.98 -2.39 -0.02 2.11 16 30 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.12 1.29 5.73 -2.39 -0.01 1.28 16 32 H 0.41 3.76 6.37 -92.70 -0.59 3.17 16 33 H 0.42 5.45 8.93 -92.71 -0.83 4.62 16 34 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.08 2.79 7.04 -2.39 -0.02 2.78 16 36 H 0.07 2.81 6.12 -2.39 -0.01 2.79 16 37 H 0.03 1.09 6.67 -2.39 -0.02 1.08 16 Total: -1.00 -72.05 289.81 -0.86 -72.91 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -0.33 Total: 11.02 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 5.06 Total: 6.75 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -7.55 Total: -113.23 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.07 Total: -24.14 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -72.05 -0.86 -72.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722154365.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.750 kcal (2) G-P(sol) polarization free energy of solvation -72.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds