Wall clock time and date at job start Mon Mar 30 2020 03:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34233 * 117.00036 * 2 1 4 4 O 1.20826 * 119.99570 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00033 * 179.97438 * 3 2 1 6 6 C 1.52994 * 109.45850 * 85.00503 * 5 3 2 7 7 C 1.52996 * 109.47119 * 300.01540 * 6 5 3 8 8 C 1.50702 * 109.47159 * 180.02562 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72211 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48501 * 109.47188 * 90.00793 * 12 10 8 14 14 H 1.48501 * 109.47085 * 210.00372 * 12 10 8 15 15 H 1.48498 * 109.47634 * 330.00608 * 12 10 8 16 16 C 1.53044 * 109.45235 * 204.97491 * 5 3 2 17 17 C 1.53118 * 109.27571 * 179.19426 * 16 5 3 18 18 C 1.53116 * 109.15916 * 302.34117 * 17 16 5 19 19 C 1.53037 * 109.27691 * 57.66157 * 18 17 16 20 20 N 1.46843 * 109.46559 * 325.01952 * 5 3 2 21 21 H 1.08991 * 109.47098 * 59.99738 * 1 2 3 22 22 H 1.08996 * 109.46910 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47239 * 299.99393 * 1 2 3 24 24 H 1.09004 * 109.46806 * 180.02562 * 6 5 3 25 25 H 1.09000 * 109.47828 * 60.02108 * 6 5 3 26 26 H 1.09004 * 109.47066 * 60.00422 * 7 6 5 27 27 H 1.08994 * 109.47405 * 300.00252 * 7 6 5 28 28 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 29 29 H 1.09009 * 109.50028 * 299.13339 * 16 5 3 30 30 H 1.09000 * 109.50373 * 59.24821 * 16 5 3 31 31 H 1.08999 * 109.51559 * 182.44051 * 17 16 5 32 32 H 1.08993 * 109.57613 * 62.28490 * 17 16 5 33 33 H 1.09002 * 109.50561 * 297.71818 * 18 17 16 34 34 H 1.09001 * 109.53166 * 177.61974 * 18 17 16 35 35 H 1.09003 * 109.46251 * 180.80301 * 19 18 17 36 36 H 1.08993 * 109.46694 * 60.83019 * 19 18 17 37 37 H 1.00893 * 111.00123 * 302.35301 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0824 1.1758 -1.4363 7 6 3.6413 -0.1563 -2.0459 8 6 4.1502 -0.2541 -3.4610 9 1 4.7306 0.5529 -3.8832 10 6 3.8801 -1.3767 -4.2147 11 7 3.1737 -2.3596 -3.7005 12 14 4.5175 -1.5013 -5.9661 13 1 5.8615 -2.1329 -5.9601 14 1 3.5856 -2.3282 -6.7743 15 1 4.6120 -0.1420 -6.5565 16 6 4.0066 2.6080 0.6098 17 6 5.5362 2.6754 0.6268 18 6 6.0828 1.4847 1.4193 19 6 5.5824 0.1842 0.7866 20 7 4.1140 0.1678 0.7948 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8901 24 1 5.1710 1.2324 -1.4360 25 1 3.6760 1.9976 -2.0259 26 1 2.5527 -0.2130 -2.0462 27 1 4.0478 -0.9780 -1.4564 28 1 2.9834 -3.1492 -4.2308 29 1 3.6128 3.4294 0.0110 30 1 3.6274 2.6854 1.6288 31 1 5.8545 3.6045 1.0995 32 1 5.9148 2.6379 -0.3945 33 1 5.7364 1.5443 2.4511 34 1 7.1725 1.5032 1.3996 35 1 5.9582 -0.6653 1.3570 36 1 5.9406 0.1187 -0.2407 37 1 3.7573 0.1886 1.7383 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722754641.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:31 Heat of formation + Delta-G solvation = -98.113448 kcal Electronic energy + Delta-G solvation = -18628.544319 eV Core-core repulsion = 15791.349881 eV Total energy + Delta-G solvation = -2837.194439 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.55331 -38.49886 -35.92087 -33.60844 -32.05136 -31.42199 -29.52524 -27.36824 -25.39533 -23.53307 -23.13100 -21.12704 -20.59679 -18.52260 -17.37668 -16.56761 -16.28068 -15.70417 -14.82017 -14.55593 -14.35461 -14.11169 -13.75695 -13.09303 -12.90028 -12.56504 -12.45014 -12.25964 -11.76771 -11.57083 -11.38066 -11.15611 -11.04396 -10.87303 -10.64746 -10.46644 -10.28911 -10.21142 -9.93040 -9.54370 -9.28019 -8.92095 -8.25130 -7.96278 -5.89020 -3.91307 2.67341 3.22948 3.36099 3.42477 3.45605 4.37840 4.52595 4.92304 4.99886 5.06169 5.22294 5.37456 5.45900 5.47841 5.49599 5.59826 5.71555 5.77557 5.91025 5.95368 6.07369 6.10797 6.16284 6.26405 6.39898 6.45001 6.65875 6.88579 7.12517 7.24937 7.64234 7.84434 8.03051 8.20627 8.30344 8.52610 9.17343 9.71018 11.21289 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.020598 B = 0.008630 C = 0.006965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.022024 B = 3243.588947 C = 4018.888979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.321 6.321 3 C 0.486 3.514 4 O -0.527 6.527 5 C 0.128 3.872 6 C -0.102 4.102 7 C 0.028 3.972 8 C -0.523 4.523 9 H 0.051 0.949 10 C 0.059 3.941 11 N -0.888 5.888 12 Si 0.886 3.114 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.276 1.276 16 C -0.135 4.135 17 C -0.119 4.119 18 C -0.158 4.158 19 C 0.055 3.945 20 N -0.653 5.653 21 H 0.059 0.941 22 H 0.098 0.902 23 H 0.053 0.947 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.018 0.982 27 H 0.038 0.962 28 H 0.258 0.742 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.591 6.149 11.074 12.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.236 6.236 3 C 0.329 3.671 4 O -0.416 6.416 5 C 0.036 3.964 6 C -0.139 4.139 7 C -0.009 4.009 8 C -0.562 4.562 9 H 0.069 0.931 10 C -0.142 4.142 11 N -0.527 5.527 12 Si 0.714 3.286 13 H -0.208 1.208 14 H -0.213 1.213 15 H -0.201 1.201 16 C -0.175 4.175 17 C -0.156 4.156 18 C -0.198 4.198 19 C -0.075 4.075 20 N -0.283 5.283 21 H 0.078 0.922 22 H 0.117 0.883 23 H 0.071 0.929 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.215 5.775 10.506 12.050 hybrid contribution 0.213 0.729 -0.429 0.872 sum 1.428 6.503 10.076 12.078 Atomic orbital electron populations 1.23199 0.77899 1.03411 1.01544 1.86759 1.21827 1.32377 1.82591 1.23569 0.91452 0.81266 0.70819 1.90594 1.67047 1.36883 1.47092 1.20974 0.86383 0.90080 0.98979 1.21889 1.00596 1.02673 0.88754 1.19098 0.96887 0.90484 0.94437 1.21286 1.33724 1.02622 0.98542 0.93108 1.24977 0.95384 0.95954 0.97911 1.69996 1.38991 1.07145 1.36605 0.86700 0.78681 0.77905 0.85308 1.20765 1.21335 1.20057 1.22121 0.96462 0.97892 1.00974 1.21594 0.94605 0.97991 1.01447 1.22308 1.01093 0.97052 0.99317 1.22130 0.86993 0.95512 1.02818 1.60440 1.07382 1.43914 1.16525 0.92204 0.88320 0.92868 0.91072 0.92694 0.96349 0.94350 0.93222 0.90335 0.92234 0.92021 0.90776 0.92455 0.91447 0.90551 0.89090 0.84880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 101.05 1.07 1.60 16 2 O -0.32 -6.35 8.96 -39.27 -0.35 -6.70 16 3 C 0.49 9.55 6.00 36.01 0.22 9.77 16 4 O -0.53 -10.91 15.86 -18.75 -0.30 -11.20 16 5 C 0.13 2.28 0.59 -132.76 -0.08 2.20 16 6 C -0.10 -2.11 3.45 -26.74 -0.09 -2.20 16 7 C 0.03 0.73 4.41 -27.88 -0.12 0.60 16 8 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 9 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 10 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 12 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 C -0.13 -2.01 4.39 -26.65 -0.12 -2.12 16 17 C -0.12 -1.51 5.69 -26.61 -0.15 -1.66 16 18 C -0.16 -1.85 6.08 -26.65 -0.16 -2.01 16 19 C 0.05 0.78 6.26 -3.83 -0.02 0.75 16 20 N -0.65 -10.65 5.30 -101.18 -0.54 -11.19 16 21 H 0.06 0.97 8.13 -51.93 -0.42 0.54 16 22 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 23 H 0.05 0.73 8.13 -51.93 -0.42 0.30 16 24 H 0.07 1.39 4.80 -51.93 -0.25 1.14 16 25 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.02 0.52 6.40 -51.93 -0.33 0.19 16 27 H 0.04 1.06 7.60 -51.93 -0.39 0.67 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 29 H 0.08 1.23 7.90 -51.92 -0.41 0.82 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 1.00 6.56 -51.93 -0.34 0.66 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.09 1.50 6.19 -51.93 -0.32 1.18 16 37 H 0.33 4.76 8.79 -39.30 -0.35 4.41 16 LS Contribution 293.81 15.07 4.43 4.43 Total: -1.00 -32.06 293.81 -6.66 -38.72 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -5.74 Total: 1.94 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 0.12 Total: -6.68 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.20 Total: -37.35 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.65 Total: -17.90 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.06 -6.66 -38.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722754641.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.396 kcal (2) G-P(sol) polarization free energy of solvation -32.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds