Wall clock time and date at job start Mon Mar 30 2020 03:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34233 * 117.00036 * 2 1 4 4 O 1.20826 * 119.99570 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00033 * 179.97438 * 3 2 1 6 6 C 1.52994 * 109.45850 * 85.00503 * 5 3 2 7 7 C 1.52996 * 109.47119 * 300.01540 * 6 5 3 8 8 C 1.50702 * 109.47159 * 180.02562 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72211 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48501 * 109.47188 * 90.00793 * 12 10 8 14 14 H 1.48501 * 109.47085 * 210.00372 * 12 10 8 15 15 H 1.48498 * 109.47634 * 330.00608 * 12 10 8 16 16 C 1.53044 * 109.45235 * 204.97491 * 5 3 2 17 17 C 1.53118 * 109.27571 * 179.19426 * 16 5 3 18 18 C 1.53116 * 109.15916 * 302.34117 * 17 16 5 19 19 C 1.53037 * 109.27691 * 57.66157 * 18 17 16 20 20 N 1.46843 * 109.46559 * 325.01952 * 5 3 2 21 21 H 1.08991 * 109.47098 * 59.99738 * 1 2 3 22 22 H 1.08996 * 109.46910 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47239 * 299.99393 * 1 2 3 24 24 H 1.09004 * 109.46806 * 180.02562 * 6 5 3 25 25 H 1.09000 * 109.47828 * 60.02108 * 6 5 3 26 26 H 1.09004 * 109.47066 * 60.00422 * 7 6 5 27 27 H 1.08994 * 109.47405 * 300.00252 * 7 6 5 28 28 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 29 29 H 1.09009 * 109.50028 * 299.13339 * 16 5 3 30 30 H 1.09000 * 109.50373 * 59.24821 * 16 5 3 31 31 H 1.08999 * 109.51559 * 182.44051 * 17 16 5 32 32 H 1.08993 * 109.57613 * 62.28490 * 17 16 5 33 33 H 1.09002 * 109.50561 * 297.71818 * 18 17 16 34 34 H 1.09001 * 109.53166 * 177.61974 * 18 17 16 35 35 H 1.09003 * 109.46251 * 180.80301 * 19 18 17 36 36 H 1.08993 * 109.46694 * 60.83019 * 19 18 17 37 37 H 1.00893 * 111.00123 * 302.35301 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0824 1.1758 -1.4363 7 6 3.6413 -0.1563 -2.0459 8 6 4.1502 -0.2541 -3.4610 9 1 4.7306 0.5529 -3.8832 10 6 3.8801 -1.3767 -4.2147 11 7 3.1737 -2.3596 -3.7005 12 14 4.5175 -1.5013 -5.9661 13 1 5.8615 -2.1329 -5.9601 14 1 3.5856 -2.3282 -6.7743 15 1 4.6120 -0.1420 -6.5565 16 6 4.0066 2.6080 0.6098 17 6 5.5362 2.6754 0.6268 18 6 6.0828 1.4847 1.4193 19 6 5.5824 0.1842 0.7866 20 7 4.1140 0.1678 0.7948 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8901 24 1 5.1710 1.2324 -1.4360 25 1 3.6760 1.9976 -2.0259 26 1 2.5527 -0.2130 -2.0462 27 1 4.0478 -0.9780 -1.4564 28 1 2.9834 -3.1492 -4.2308 29 1 3.6128 3.4294 0.0110 30 1 3.6274 2.6854 1.6288 31 1 5.8545 3.6045 1.0995 32 1 5.9148 2.6379 -0.3945 33 1 5.7364 1.5443 2.4511 34 1 7.1725 1.5032 1.3996 35 1 5.9582 -0.6653 1.3570 36 1 5.9406 0.1187 -0.2407 37 1 3.7573 0.1886 1.7383 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722754641.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:30 Heat of formation + Delta-G solvation = -119.082789 kcal Electronic energy + Delta-G solvation = -18629.453618 eV Core-core repulsion = 15791.349881 eV Total energy + Delta-G solvation = -2838.103737 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.00248 -39.83342 -37.44127 -35.54468 -33.67815 -32.64831 -31.22788 -28.67274 -27.27136 -24.99565 -24.33016 -22.98543 -21.85465 -19.95385 -18.81688 -18.44540 -17.89022 -17.34714 -16.55457 -15.88032 -15.68769 -15.52782 -15.01329 -14.45148 -14.36422 -14.14816 -14.06520 -13.77986 -13.36764 -12.97273 -12.83224 -12.77624 -12.62978 -12.38389 -12.22646 -11.93565 -11.78148 -11.65603 -11.38229 -11.28027 -11.14231 -10.90961 -10.45767 -9.19569 -8.11115 -6.21764 1.13574 1.40835 1.41947 1.52421 1.85847 2.44322 3.12409 3.20893 3.66205 3.83401 3.89080 4.10515 4.21162 4.24740 4.28726 4.32541 4.52955 4.60888 4.67262 4.70715 4.87997 4.92961 4.99292 5.08164 5.12469 5.21159 5.27224 5.41013 5.46919 5.60202 5.86825 6.00501 6.04176 6.32248 6.49583 6.81292 6.97484 7.45462 8.99469 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.020598 B = 0.008630 C = 0.006965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.022024 B = 3243.588947 C = 4018.888979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.343 6.343 3 C 0.479 3.521 4 O -0.543 6.543 5 C 0.133 3.867 6 C -0.090 4.090 7 C 0.042 3.958 8 C -0.546 4.546 9 H 0.054 0.946 10 C 0.004 3.996 11 N -0.924 5.924 12 Si 0.957 3.043 13 H -0.271 1.271 14 H -0.284 1.284 15 H -0.267 1.267 16 C -0.128 4.128 17 C -0.117 4.117 18 C -0.147 4.147 19 C 0.053 3.947 20 N -0.670 5.670 21 H 0.048 0.952 22 H 0.120 0.880 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.044 0.956 26 H -0.014 1.014 27 H 0.015 0.985 28 H 0.261 0.739 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.848 6.868 11.676 13.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.257 6.257 3 C 0.323 3.677 4 O -0.433 6.433 5 C 0.040 3.960 6 C -0.128 4.128 7 C 0.005 3.995 8 C -0.584 4.584 9 H 0.073 0.927 10 C -0.194 4.194 11 N -0.564 5.564 12 Si 0.782 3.218 13 H -0.196 1.196 14 H -0.210 1.210 15 H -0.192 1.192 16 C -0.168 4.168 17 C -0.154 4.154 18 C -0.186 4.186 19 C -0.075 4.075 20 N -0.301 5.301 21 H 0.067 0.933 22 H 0.138 0.862 23 H 0.093 0.907 24 H 0.103 0.897 25 H 0.062 0.938 26 H 0.005 0.995 27 H 0.033 0.967 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.481 6.500 11.121 13.118 hybrid contribution -0.243 0.453 -0.601 0.791 sum 2.238 6.953 10.519 12.807 Atomic orbital electron populations 1.23468 0.76087 1.05080 1.02070 1.86735 1.23912 1.32706 1.82382 1.24033 0.92344 0.81016 0.70312 1.90566 1.67625 1.37222 1.47933 1.20860 0.85212 0.92441 0.97460 1.21656 1.01364 0.99157 0.90616 1.18831 0.94516 0.92490 0.93633 1.21739 1.33847 1.02896 0.99934 0.92746 1.25877 0.95506 0.95546 1.02515 1.70133 1.40122 1.07744 1.38425 0.85581 0.78337 0.78231 0.79681 1.19614 1.20960 1.19163 1.22084 0.98212 0.95354 1.01129 1.21617 0.92663 0.99765 1.01371 1.22217 1.02166 0.94633 0.99632 1.22146 0.85687 0.97934 1.01751 1.60353 1.08849 1.43658 1.17287 0.93286 0.86204 0.90698 0.89737 0.93774 0.99540 0.96699 0.93063 0.91438 0.90815 0.89450 0.91934 0.90660 0.89497 0.89073 0.91882 0.83419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 10.56 113.37 1.20 2.03 16 2 O -0.34 -13.81 8.96 -51.44 -0.46 -14.27 16 3 C 0.48 19.03 6.00 71.24 0.43 19.45 16 4 O -0.54 -22.59 15.86 21.96 0.35 -22.24 16 5 C 0.13 4.70 0.59 2.80 0.00 4.70 16 6 C -0.09 -3.82 3.45 30.59 0.11 -3.71 16 7 C 0.04 2.27 4.41 29.85 0.13 2.40 16 8 C -0.55 -31.61 9.11 25.60 0.23 -31.38 16 9 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 10 C 0.00 0.22 5.46 84.66 0.46 0.68 16 11 N -0.92 -56.99 13.29 21.45 0.28 -56.70 16 12 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 13 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 14 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 15 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 16 C -0.13 -3.61 4.39 30.65 0.13 -3.48 16 17 C -0.12 -2.65 5.69 30.67 0.17 -2.47 16 18 C -0.15 -2.98 6.08 30.65 0.19 -2.79 16 19 C 0.05 1.45 6.26 86.33 0.54 1.99 16 20 N -0.67 -21.44 5.30 -474.01 -2.51 -23.95 16 21 H 0.05 1.62 8.13 -2.39 -0.02 1.60 16 22 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 23 H 0.07 2.00 8.13 -2.38 -0.02 1.98 16 24 H 0.08 3.32 4.80 -2.38 -0.01 3.31 16 25 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 26 H -0.01 -0.82 6.40 -2.38 -0.02 -0.83 16 27 H 0.01 0.85 7.60 -2.39 -0.02 0.83 16 28 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 29 H 0.07 2.05 7.90 -2.38 -0.02 2.03 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.06 1.57 6.56 -2.39 -0.02 1.55 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.06 2.06 6.19 -2.39 -0.01 2.04 16 37 H 0.35 9.44 8.79 -89.70 -0.79 8.65 16 Total: -1.00 -69.71 293.81 3.55 -66.15 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.27 Total: 16.60 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 3.59 Total: -12.58 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -2.23 Total: -80.65 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -0.11 Total: -36.51 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -69.71 3.55 -66.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722754641.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.928 kcal (2) G-P(sol) polarization free energy of solvation -69.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds