Wall clock time and date at job start Mon Mar 30 2020 03:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.09003 * 109.47098 * 29.99622 * 3 2 1 5 5 C 1.50697 * 109.46850 * 269.99559 * 3 2 1 6 6 O 1.21280 * 120.00276 * 355.00373 * 5 3 2 7 7 N 1.34780 * 119.99752 * 174.99783 * 5 3 2 8 8 C 1.46505 * 119.99669 * 180.02562 * 7 5 3 9 9 C 1.50708 * 109.46630 * 180.02562 * 8 7 5 10 10 H 1.07995 * 120.00038 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99418 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00195 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99473 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47411 * 60.00018 * 13 11 9 15 15 H 1.48501 * 109.46524 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46885 * 299.99687 * 13 11 9 17 17 C 1.53005 * 109.47314 * 149.99762 * 3 2 1 18 18 C 1.54269 * 110.02978 * 57.16268 * 17 3 2 19 19 C 1.54890 * 104.19577 * 217.10565 * 18 17 3 20 20 C 1.54892 * 102.74713 * 37.94746 * 19 18 17 21 21 C 1.53872 * 110.03035 * 299.99897 * 17 3 2 22 22 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 23 23 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 25 25 H 0.97004 * 120.00047 * 0.02562 * 7 5 3 26 26 H 1.08996 * 109.47417 * 299.99881 * 8 7 5 27 27 H 1.08991 * 109.46908 * 60.00565 * 8 7 5 28 28 H 0.97002 * 119.99577 * 180.02562 * 12 11 9 29 29 H 1.08994 * 110.01900 * 178.60820 * 17 3 2 30 30 H 1.09001 * 110.48747 * 335.78819 * 18 17 3 31 31 H 1.09002 * 110.48456 * 98.43128 * 18 17 3 32 32 H 1.08999 * 110.75674 * 279.63454 * 19 18 17 33 33 H 1.09001 * 110.91623 * 156.33111 * 19 18 17 34 34 H 1.08997 * 110.48596 * 203.38059 * 20 19 18 35 35 H 1.08999 * 110.60239 * 80.79118 * 20 19 18 36 36 H 1.09002 * 110.03320 * 238.57086 * 21 17 3 37 37 H 1.09003 * 110.03687 * 359.97438 * 21 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2146 1.7642 -1.4208 6 8 1.9792 1.0105 -2.3413 7 7 2.6589 3.0123 -1.6686 8 6 2.8571 3.4585 -3.0499 9 6 3.3555 4.8808 -3.0516 10 1 3.5097 5.4001 -2.1174 11 6 3.6157 5.5185 -4.2461 12 7 3.4284 4.8859 -5.3838 13 14 4.2342 7.2812 -4.2483 14 1 5.5230 7.3546 -3.5142 15 1 4.4349 7.7335 -5.6484 16 1 3.2356 8.1570 -3.5840 17 6 3.3589 1.2633 0.7213 18 6 4.2869 0.2319 0.0468 19 6 5.0608 -0.4103 1.2248 20 6 3.9820 -0.5031 2.3324 21 6 3.1651 0.7960 2.1745 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8901 25 1 2.8475 3.6151 -0.9323 26 1 3.5904 2.8163 -3.5375 27 1 1.9111 3.4040 -3.5885 28 1 3.6119 5.3345 -6.2240 29 1 3.8218 2.2499 0.7050 30 1 3.7010 -0.5211 -0.4804 31 1 4.9758 0.7281 -0.6368 32 1 5.8845 0.2299 1.5406 33 1 5.4251 -1.4020 0.9565 34 1 4.4483 -0.5432 3.3167 35 1 3.3464 -1.3748 2.1766 36 1 3.5346 1.5556 2.8634 37 1 2.1101 0.5996 2.3661 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834652613.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:59 Heat of formation + Delta-G solvation = -106.581177 kcal Electronic energy + Delta-G solvation = -17924.806591 eV Core-core repulsion = 15087.244964 eV Total energy + Delta-G solvation = -2837.561627 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.82524 -37.60234 -36.53976 -34.12256 -32.38819 -30.67941 -28.59088 -27.35794 -26.51382 -24.94186 -22.37917 -20.71005 -20.03199 -19.31469 -17.53724 -16.44190 -16.04916 -15.70038 -15.22710 -14.93248 -14.37022 -14.16321 -13.86804 -13.53495 -13.17686 -12.71837 -12.62833 -11.95685 -11.73169 -11.51178 -11.19046 -11.04972 -10.99622 -10.89708 -10.88190 -10.50008 -10.48361 -10.42825 -10.32104 -10.10455 -9.41285 -8.73043 -8.61886 -7.87164 -6.16532 -4.23742 3.24844 3.29630 3.31022 3.32482 3.74628 4.17352 4.37284 4.65552 4.74885 4.83681 5.16024 5.19446 5.28668 5.41089 5.45878 5.53004 5.62108 5.73256 5.77128 5.78869 5.81266 5.87176 5.97682 6.02448 6.17709 6.35939 6.42144 6.61774 7.16987 7.33023 7.45188 7.52162 7.67300 7.97120 8.62693 8.78435 9.10897 9.42952 10.93607 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.029698 B = 0.005673 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.593433 B = 4934.437035 C = 5395.352727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.354 6.354 3 C 0.078 3.922 4 H 0.078 0.922 5 C 0.477 3.523 6 O -0.542 6.542 7 N -0.711 5.711 8 C 0.251 3.749 9 C -0.544 4.544 10 H 0.062 0.938 11 C 0.064 3.936 12 N -0.886 5.886 13 Si 0.904 3.096 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.275 1.275 17 C -0.084 4.084 18 C -0.118 4.118 19 C -0.123 4.123 20 C -0.119 4.119 21 C -0.113 4.113 22 H 0.037 0.963 23 H 0.085 0.915 24 H 0.045 0.955 25 H 0.389 0.611 26 H 0.027 0.973 27 H 0.025 0.975 28 H 0.266 0.734 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.162 -7.006 15.710 17.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.016 3.984 4 H 0.096 0.904 5 C 0.261 3.739 6 O -0.419 6.419 7 N -0.361 5.361 8 C 0.130 3.870 9 C -0.582 4.582 10 H 0.080 0.920 11 C -0.140 4.140 12 N -0.523 5.523 13 Si 0.731 3.269 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.201 1.201 17 C -0.103 4.103 18 C -0.156 4.156 19 C -0.160 4.160 20 C -0.157 4.157 21 C -0.151 4.151 22 H 0.055 0.945 23 H 0.103 0.897 24 H 0.064 0.936 25 H 0.221 0.779 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.218 -7.697 14.805 16.731 hybrid contribution 0.145 1.587 0.131 1.599 sum -1.073 -6.110 14.936 16.173 Atomic orbital electron populations 1.22802 0.81307 1.02649 0.99845 1.87932 1.19339 1.25318 1.94511 1.22128 0.96294 0.86257 0.93712 0.90425 1.21089 0.78727 0.82837 0.91255 1.90660 1.51262 1.54024 1.46002 1.46500 1.65154 1.12783 1.11696 1.19086 0.97060 0.94412 0.76457 1.21188 1.46428 0.97541 0.93042 0.91968 1.24952 0.95199 0.98601 0.95220 1.69969 1.47373 1.37378 0.97566 0.86479 0.79325 0.83906 0.77219 1.20049 1.21056 1.20086 1.21888 0.93001 1.00698 0.94711 1.22367 0.97586 0.98314 0.97328 1.22469 0.97506 1.00451 0.95608 1.22296 0.97272 0.97953 0.98156 1.22110 1.00596 0.97304 0.95075 0.94463 0.89677 0.93636 0.77872 0.95550 0.95678 0.92389 0.89360 0.90049 0.91608 0.91834 0.91830 0.92281 0.91506 0.91929 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.81 101.05 1.09 1.49 16 2 O -0.35 -5.61 8.34 -55.09 -0.46 -6.07 16 3 C 0.08 1.20 2.05 -27.88 -0.06 1.14 16 4 H 0.08 1.02 7.79 -51.93 -0.40 0.62 16 5 C 0.48 9.81 6.53 -10.99 -0.07 9.74 16 6 O -0.54 -13.57 16.51 -14.30 -0.24 -13.81 16 7 N -0.71 -15.11 5.51 -61.47 -0.34 -15.45 16 8 C 0.25 6.70 5.43 -5.19 -0.03 6.67 16 9 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16 10 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 11 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 12 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 13 Si 0.90 20.83 29.54 -169.99 -5.02 15.80 16 14 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 15 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 C -0.08 -1.13 2.79 -89.50 -0.25 -1.38 16 18 C -0.12 -1.73 5.67 -25.07 -0.14 -1.87 16 19 C -0.12 -1.42 6.91 -24.74 -0.17 -1.59 16 20 C -0.12 -1.26 6.83 -25.07 -0.17 -1.43 16 21 C -0.11 -1.23 6.22 -25.61 -0.16 -1.39 16 22 H 0.04 0.39 8.09 -51.93 -0.42 -0.03 16 23 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.39 7.04 8.11 -40.82 -0.33 6.71 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.09 1.12 7.93 -51.93 -0.41 0.71 16 30 H 0.08 1.37 7.12 -51.93 -0.37 1.00 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.71 7.42 -51.93 -0.39 0.32 16 LS Contribution 306.25 15.07 4.62 4.62 Total: -1.00 -32.22 306.25 -7.16 -39.38 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -6.08 Total: 2.99 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -0.37 Total: -2.01 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.40 Total: -40.91 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.70 Total: -19.87 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.22 -7.16 -39.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834652613.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.199 kcal (2) G-P(sol) polarization free energy of solvation -32.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds