Wall clock time and date at job start Mon Mar 30 2020 03:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.09003 * 109.47098 * 29.99622 * 3 2 1 5 5 C 1.50697 * 109.46850 * 269.99559 * 3 2 1 6 6 O 1.21280 * 120.00276 * 355.00373 * 5 3 2 7 7 N 1.34780 * 119.99752 * 174.99783 * 5 3 2 8 8 C 1.46505 * 119.99669 * 180.02562 * 7 5 3 9 9 C 1.50708 * 109.46630 * 180.02562 * 8 7 5 10 10 H 1.07995 * 120.00038 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99418 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00195 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99473 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47411 * 60.00018 * 13 11 9 15 15 H 1.48501 * 109.46524 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46885 * 299.99687 * 13 11 9 17 17 C 1.53005 * 109.47314 * 149.99762 * 3 2 1 18 18 C 1.54269 * 110.02978 * 57.16268 * 17 3 2 19 19 C 1.54890 * 104.19577 * 217.10565 * 18 17 3 20 20 C 1.54892 * 102.74713 * 37.94746 * 19 18 17 21 21 C 1.53872 * 110.03035 * 299.99897 * 17 3 2 22 22 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 23 23 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 25 25 H 0.97004 * 120.00047 * 0.02562 * 7 5 3 26 26 H 1.08996 * 109.47417 * 299.99881 * 8 7 5 27 27 H 1.08991 * 109.46908 * 60.00565 * 8 7 5 28 28 H 0.97002 * 119.99577 * 180.02562 * 12 11 9 29 29 H 1.08994 * 110.01900 * 178.60820 * 17 3 2 30 30 H 1.09001 * 110.48747 * 335.78819 * 18 17 3 31 31 H 1.09002 * 110.48456 * 98.43128 * 18 17 3 32 32 H 1.08999 * 110.75674 * 279.63454 * 19 18 17 33 33 H 1.09001 * 110.91623 * 156.33111 * 19 18 17 34 34 H 1.08997 * 110.48596 * 203.38059 * 20 19 18 35 35 H 1.08999 * 110.60239 * 80.79118 * 20 19 18 36 36 H 1.09002 * 110.03320 * 238.57086 * 21 17 3 37 37 H 1.09003 * 110.03687 * 359.97438 * 21 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2146 1.7642 -1.4208 6 8 1.9792 1.0105 -2.3413 7 7 2.6589 3.0123 -1.6686 8 6 2.8571 3.4585 -3.0499 9 6 3.3555 4.8808 -3.0516 10 1 3.5097 5.4001 -2.1174 11 6 3.6157 5.5185 -4.2461 12 7 3.4284 4.8859 -5.3838 13 14 4.2342 7.2812 -4.2483 14 1 5.5230 7.3546 -3.5142 15 1 4.4349 7.7335 -5.6484 16 1 3.2356 8.1570 -3.5840 17 6 3.3589 1.2633 0.7213 18 6 4.2869 0.2319 0.0468 19 6 5.0608 -0.4103 1.2248 20 6 3.9820 -0.5031 2.3324 21 6 3.1651 0.7960 2.1745 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8901 25 1 2.8475 3.6151 -0.9323 26 1 3.5904 2.8163 -3.5375 27 1 1.9111 3.4040 -3.5885 28 1 3.6119 5.3345 -6.2240 29 1 3.8218 2.2499 0.7050 30 1 3.7010 -0.5211 -0.4804 31 1 4.9758 0.7281 -0.6368 32 1 5.8845 0.2299 1.5406 33 1 5.4251 -1.4020 0.9565 34 1 4.4483 -0.5432 3.3167 35 1 3.3464 -1.3748 2.1766 36 1 3.5346 1.5556 2.8634 37 1 2.1101 0.5996 2.3661 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834652613.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:59 Heat of formation + Delta-G solvation = -128.487528 kcal Electronic energy + Delta-G solvation = -17925.756522 eV Core-core repulsion = 15087.244964 eV Total energy + Delta-G solvation = -2838.511558 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.25831 -39.02150 -37.69207 -36.11219 -34.40469 -31.92627 -29.57216 -29.27349 -27.56148 -26.39650 -24.32676 -21.92468 -21.31471 -20.57775 -19.21918 -17.86684 -17.72276 -17.06262 -16.69747 -16.32764 -16.04895 -15.57688 -15.32251 -14.94955 -14.21821 -14.11156 -14.07678 -13.87982 -13.56162 -12.97418 -12.68578 -12.54642 -12.32468 -12.19569 -11.91560 -11.87481 -11.64730 -11.57082 -11.52507 -11.39118 -11.29524 -10.80405 -10.19664 -9.86586 -8.29879 -6.47262 1.42721 1.47079 1.55320 1.67698 2.25711 2.45370 2.85724 3.04853 3.59965 3.68739 3.82868 3.96813 4.09267 4.35892 4.47404 4.53967 4.63266 4.68044 4.74257 4.80546 4.85433 4.93138 5.02930 5.08732 5.14452 5.20657 5.29446 5.36906 5.45915 5.48819 5.57297 5.65140 5.82577 6.07217 6.63129 6.88114 7.21999 7.45227 8.82216 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.029698 B = 0.005673 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.593433 B = 4934.437035 C = 5395.352727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.370 6.370 3 C 0.090 3.910 4 H 0.113 0.887 5 C 0.473 3.527 6 O -0.595 6.595 7 N -0.703 5.703 8 C 0.268 3.732 9 C -0.556 4.556 10 H 0.086 0.914 11 C 0.003 3.997 12 N -0.932 5.932 13 Si 0.986 3.014 14 H -0.261 1.261 15 H -0.286 1.286 16 H -0.261 1.261 17 C -0.084 4.084 18 C -0.125 4.125 19 C -0.118 4.118 20 C -0.116 4.116 21 C -0.106 4.106 22 H 0.071 0.929 23 H 0.102 0.898 24 H 0.020 0.980 25 H 0.408 0.592 26 H -0.016 1.016 27 H -0.015 1.015 28 H 0.269 0.731 29 H 0.098 0.902 30 H 0.050 0.950 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.821 -5.558 19.025 19.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.287 6.287 3 C 0.028 3.972 4 H 0.130 0.870 5 C 0.259 3.741 6 O -0.476 6.476 7 N -0.354 5.354 8 C 0.145 3.855 9 C -0.594 4.594 10 H 0.104 0.896 11 C -0.196 4.196 12 N -0.571 5.571 13 Si 0.809 3.191 14 H -0.186 1.186 15 H -0.212 1.212 16 H -0.185 1.185 17 C -0.103 4.103 18 C -0.162 4.162 19 C -0.155 4.155 20 C -0.153 4.153 21 C -0.143 4.143 22 H 0.090 0.910 23 H 0.121 0.879 24 H 0.039 0.961 25 H 0.244 0.756 26 H 0.002 0.998 27 H 0.003 0.997 28 H 0.077 0.923 29 H 0.117 0.883 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.883 -6.251 18.184 19.249 hybrid contribution -0.002 1.032 -0.952 1.404 sum -0.885 -5.218 17.232 18.026 Atomic orbital electron populations 1.23015 0.79875 1.04095 1.00222 1.87938 1.21025 1.25501 1.94216 1.22182 0.98432 0.86874 0.89717 0.86956 1.22259 0.76689 0.81678 0.93426 1.90628 1.53223 1.55282 1.48437 1.46225 1.65388 1.13753 1.10072 1.18520 0.93759 0.94410 0.78831 1.21583 1.46151 0.97426 0.94224 0.89609 1.26096 0.95039 1.03900 0.94573 1.70144 1.48623 1.39805 0.98514 0.85189 0.79290 0.77323 0.77307 1.18559 1.21163 1.18511 1.21994 0.91205 1.00884 0.96224 1.22339 0.97605 0.98126 0.98161 1.22461 0.97973 1.00486 0.94608 1.22296 0.96709 0.97628 0.98713 1.22103 1.01288 0.97947 0.93006 0.91020 0.87934 0.96132 0.75622 0.99830 0.99711 0.92251 0.88338 0.93151 0.93983 0.90519 0.91688 0.89864 0.92181 0.89466 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 10.81 113.37 1.23 1.81 16 2 O -0.37 -11.39 8.34 -129.99 -1.08 -12.47 16 3 C 0.09 2.65 2.05 29.85 0.06 2.71 16 4 H 0.11 2.59 7.79 -2.39 -0.02 2.57 16 5 C 0.47 19.96 6.53 87.66 0.57 20.53 16 6 O -0.59 -31.55 16.51 15.96 0.26 -31.29 16 7 N -0.70 -30.43 5.51 -466.78 -2.57 -33.00 16 8 C 0.27 15.02 5.43 85.63 0.46 15.49 16 9 C -0.56 -30.41 9.28 25.60 0.24 -30.17 16 10 H 0.09 4.18 7.60 -2.91 -0.02 4.16 16 11 C 0.00 0.19 5.46 84.66 0.46 0.66 16 12 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 13 Si 0.99 42.25 29.54 68.60 2.03 44.27 16 14 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 15 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 16 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 17 C -0.08 -2.10 2.79 -10.07 -0.03 -2.12 16 18 C -0.12 -3.65 5.67 31.67 0.18 -3.47 16 19 C -0.12 -2.53 6.91 31.89 0.22 -2.31 16 20 C -0.12 -2.08 6.83 31.67 0.22 -1.86 16 21 C -0.11 -1.90 6.22 31.32 0.19 -1.71 16 22 H 0.07 1.26 8.09 -2.39 -0.02 1.24 16 23 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 24 H 0.02 0.59 8.14 -2.38 -0.02 0.57 16 25 H 0.41 14.35 8.11 -92.71 -0.75 13.60 16 26 H -0.02 -1.04 8.14 -2.39 -0.02 -1.05 16 27 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 28 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 29 H 0.10 2.25 7.93 -2.39 -0.02 2.23 16 30 H 0.05 1.77 7.12 -2.39 -0.02 1.76 16 31 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.07 1.25 7.42 -2.39 -0.02 1.23 16 Total: -1.00 -74.15 306.25 3.02 -71.13 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.29 Total: 18.40 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 3.81 Total: -0.45 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -2.29 Total: -89.60 kcal Atomic # 8 Polarization: -42.94 SS G_CDS: -0.82 Total: -43.76 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -74.15 3.02 -71.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834652613.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.356 kcal (2) G-P(sol) polarization free energy of solvation -74.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds