Wall clock time and date at job start Mon Mar 30 2020 03:18:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86801 * 119.99882 * 2 1
4 4 H 1.48502 * 109.47009 * 269.99793 * 3 2 1
5 5 H 1.48504 * 109.47177 * 29.99544 * 3 2 1
6 6 H 1.48502 * 109.47378 * 149.99651 * 3 2 1
7 7 C 1.37876 * 120.00571 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00399 * 179.97438 * 7 2 1
9 9 C 1.50702 * 119.99803 * 0.02562 * 7 2 1
10 10 C 1.53000 * 109.47164 * 179.97438 * 9 7 2
11 11 C 1.53000 * 109.46802 * 180.02562 * 10 9 7
12 12 N 1.46904 * 109.46634 * 174.67103 * 11 10 9
13 13 C 1.47445 * 111.00318 * 55.16036 * 12 11 10
14 14 C 1.54316 * 107.23571 * 123.25142 * 13 12 11
15 15 C 1.55264 * 103.08571 * 22.20593 * 14 13 12
16 16 C 1.47854 * 110.99568 * 175.99977 * 12 11 10
17 17 H 1.09000 * 110.37330 * 332.57351 * 16 12 11
18 18 C 1.52997 * 110.37086 * 94.80928 * 16 12 11
19 19 C 1.53000 * 109.47108 * 295.04529 * 18 16 12
20 20 C 1.53001 * 109.47156 * 185.56860 * 19 18 16
21 21 O 1.42900 * 109.47138 * 179.97438 * 20 19 18
22 22 H 0.96993 * 120.00305 * 0.02562 * 1 2 3
23 23 H 1.08998 * 109.47056 * 59.99123 * 9 7 2
24 24 H 1.09002 * 109.47006 * 299.99399 * 9 7 2
25 25 H 1.09000 * 109.47163 * 59.99465 * 10 9 7
26 26 H 1.09002 * 109.46936 * 299.99769 * 10 9 7
27 27 H 1.08994 * 109.47330 * 54.67435 * 11 10 9
28 28 H 1.08993 * 109.47235 * 294.66780 * 11 10 9
29 29 H 1.08994 * 109.88714 * 242.66309 * 13 12 11
30 30 H 1.09006 * 109.88395 * 3.84422 * 13 12 11
31 31 H 1.09002 * 110.70287 * 140.66668 * 14 13 12
32 32 H 1.08994 * 110.70457 * 263.72690 * 14 13 12
33 33 H 1.09001 * 111.08675 * 206.38132 * 15 14 13
34 34 H 1.08997 * 110.94083 * 82.52730 * 15 14 13
35 35 H 1.09002 * 109.46764 * 175.04702 * 18 16 12
36 36 H 1.08998 * 109.47107 * 55.04811 * 18 16 12
37 37 H 1.09004 * 109.46998 * 305.56672 * 19 18 16
38 38 H 1.09000 * 109.46837 * 65.56921 * 19 18 16
39 39 H 1.08995 * 109.47378 * 300.00284 * 20 19 18
40 40 H 1.09001 * 109.46725 * 60.00046 * 20 19 18
41 41 H 0.96699 * 113.99497 * 180.02562 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0464 -1.4001
5 1 1.4465 2.6527 0.7000
6 1 3.5466 1.4403 0.7001
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1939 0.0001
9 6 1.2512 -2.4991 0.0005
10 6 2.2455 -3.6620 0.0005
11 6 1.4805 -4.9870 -0.0001
12 7 2.4301 -6.1005 -0.1287
13 6 3.4589 -6.0422 0.9259
14 6 3.4097 -7.3836 1.6872
15 6 2.7456 -8.3443 0.6641
16 6 1.7354 -7.4025 -0.0373
17 1 0.8281 -7.3074 0.5593
18 6 1.4002 -7.9267 -1.4350
19 6 0.3939 -6.9882 -2.1039
20 6 -0.0467 -7.5834 -3.4427
21 8 -0.9871 -6.7072 -4.0672
22 1 -0.4850 0.8400 -0.0004
23 1 0.6248 -2.5570 -0.8896
24 1 0.6243 -2.5568 0.8904
25 1 2.8722 -3.6042 0.8905
26 1 2.8721 -3.6042 -0.8895
27 1 0.7845 -5.0044 -0.8387
28 1 0.9271 -5.0875 0.9335
29 1 4.4427 -5.9064 0.4770
30 1 3.2437 -5.2202 1.6087
31 1 4.4153 -7.7216 1.9376
32 1 2.7995 -7.2946 2.5859
33 1 2.2313 -9.1614 1.1701
34 1 3.4800 -8.7267 -0.0448
35 1 0.9689 -8.9245 -1.3550
36 1 2.3097 -7.9709 -2.0342
37 1 -0.4749 -6.8664 -1.4570
38 1 0.8596 -6.0174 -2.2736
39 1 0.8220 -7.7054 -4.0897
40 1 -0.5124 -8.5542 -3.2730
41 1 -1.3104 -7.0223 -4.9223
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000052759675.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:18:34
Heat of formation + Delta-G solvation = -74.645208 kcal
Electronic energy + Delta-G solvation = -17757.722298 eV
Core-core repulsion = 15057.378614 eV
Total energy + Delta-G solvation = -2700.343685 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.29379 -36.99798 -34.38307 -33.50423 -32.36743 -29.92943 -28.97925 -26.05541
-24.93259 -23.09397 -21.59915 -20.89006 -19.86857 -19.28146 -17.30061 -16.57494
-16.10790 -15.45499 -15.26338 -14.38417 -14.18319 -13.87185 -13.72450 -13.08559
-12.92273 -12.46991 -12.22613 -12.06024 -11.92586 -11.53625 -11.24295 -11.02632
-10.93648 -10.86938 -10.61594 -10.60407 -10.54889 -10.43096 -10.16409 -9.92083
-9.54841 -9.25138 -8.97519 -8.28049 -7.96278 -5.93288 -3.95291 3.36384
3.42084 3.45690 4.17622 4.20496 4.51801 4.71496 4.80324 5.04254
5.04920 5.16417 5.30742 5.37496 5.42306 5.48361 5.57984 5.67804
5.74469 5.77831 5.85055 5.90927 5.92911 5.93456 6.13785 6.17190
6.31446 6.36769 6.38517 6.52249 6.78817 6.90867 7.18024 7.39429
7.51790 7.63543 7.75796 7.91540 8.07562 8.50771 9.11954 9.68302
11.18199
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.018974 B = 0.005517 C = 0.004442
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1475.321224 B = 5073.688468 C = 6302.265214
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.056 3.944
3 Si 0.891 3.109
4 H -0.280 1.280
5 H -0.287 1.287
6 H -0.274 1.274
7 C -0.517 4.517
8 H 0.054 0.946
9 C 0.022 3.978
10 C -0.108 4.108
11 C 0.045 3.955
12 N -0.524 5.524
13 C 0.039 3.961
14 C -0.143 4.143
15 C -0.123 4.123
16 C 0.070 3.930
17 H 0.053 0.947
18 C -0.095 4.095
19 C -0.125 4.125
20 C 0.077 3.923
21 O -0.572 6.572
22 H 0.260 0.740
23 H 0.017 0.983
24 H 0.012 0.988
25 H 0.046 0.954
26 H 0.055 0.945
27 H 0.079 0.921
28 H 0.025 0.975
29 H 0.073 0.927
30 H 0.063 0.937
31 H 0.070 0.930
32 H 0.063 0.937
33 H 0.068 0.932
34 H 0.073 0.927
35 H 0.059 0.941
36 H 0.070 0.930
37 H 0.064 0.936
38 H 0.086 0.914
39 H 0.043 0.957
40 H 0.038 0.962
41 H 0.375 0.625
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.909 -19.191 -2.125 19.526
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.536 5.536
2 C -0.145 4.145
3 Si 0.719 3.281
4 H -0.207 1.207
5 H -0.213 1.213
6 H -0.199 1.199
7 C -0.556 4.556
8 H 0.072 0.928
9 C -0.016 4.016
10 C -0.146 4.146
11 C -0.082 4.082
12 N -0.248 5.248
13 C -0.089 4.089
14 C -0.181 4.181
15 C -0.161 4.161
16 C -0.039 4.039
17 H 0.071 0.929
18 C -0.133 4.133
19 C -0.163 4.163
20 C -0.001 4.001
21 O -0.377 6.377
22 H 0.069 0.931
23 H 0.035 0.965
24 H 0.031 0.969
25 H 0.065 0.935
26 H 0.074 0.926
27 H 0.097 0.903
28 H 0.043 0.957
29 H 0.091 0.909
30 H 0.082 0.918
31 H 0.089 0.911
32 H 0.082 0.918
33 H 0.086 0.914
34 H 0.092 0.908
35 H 0.078 0.922
36 H 0.088 0.912
37 H 0.083 0.917
38 H 0.105 0.895
39 H 0.061 0.939
40 H 0.057 0.943
41 H 0.221 0.779
Dipole moment (debyes) X Y Z Total
from point charges 3.102 -18.663 -2.057 19.030
hybrid contribution -0.104 0.583 0.314 0.670
sum 2.998 -18.079 -1.743 18.409
Atomic orbital electron populations
1.69968 1.06044 1.26487 1.51068 1.25026 0.94830 0.99202 0.95449
0.86610 0.79821 0.83570 0.78091 1.20663 1.21282 1.19927 1.21253
0.92996 0.91089 1.50252 0.92753 1.19066 0.94017 0.91360 0.97107
1.21726 0.99186 0.93044 1.00607 1.22621 0.94554 0.91066 0.99981
1.63589 1.13547 1.01668 1.46015 1.22844 0.96818 0.96537 0.92662
1.22811 1.00977 0.96117 0.98228 1.22740 0.98261 0.97258 0.97877
1.22589 0.95957 0.89822 0.95519 0.92936 1.21393 0.98994 0.97447
0.95511 1.21673 0.99100 1.01033 0.94459 1.22226 0.91128 0.91978
0.94741 1.86568 1.62821 1.49951 1.38319 0.93074 0.96509 0.96913
0.93540 0.92607 0.90307 0.95692 0.90887 0.91833 0.91148 0.91795
0.91356 0.90783 0.92193 0.91168 0.91731 0.89517 0.93878 0.94331
0.77908
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.75 13.29 55.43 0.74 -27.02 16
2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16
3 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16
4 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16
5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
6 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16
7 C -0.52 -15.18 9.11 -34.44 -0.31 -15.50 16
8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16
9 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16
10 C -0.11 -2.34 4.82 -26.73 -0.13 -2.47 16
11 C 0.04 0.83 4.45 -3.82 -0.02 0.81 16
12 N -0.52 -8.10 4.76 -223.38 -1.06 -9.16 16
13 C 0.04 0.56 6.19 -2.84 -0.02 0.54 16
14 C -0.14 -1.61 6.94 -24.84 -0.17 -1.79 16
15 C -0.12 -1.30 6.51 -24.52 -0.16 -1.46 16
16 C 0.07 0.89 2.58 -66.18 -0.17 0.72 16
17 H 0.05 0.71 7.71 -51.93 -0.40 0.31 16
18 C -0.10 -1.09 4.94 -26.73 -0.13 -1.22 16
19 C -0.13 -1.67 4.37 -26.73 -0.12 -1.78 16
20 C 0.08 0.87 7.05 37.16 0.26 1.14 16
21 O -0.57 -7.42 13.66 -35.23 -0.48 -7.90 16
22 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16
23 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16
24 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16
25 H 0.05 0.99 6.41 -51.93 -0.33 0.65 16
26 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16
27 H 0.08 1.50 5.37 -51.93 -0.28 1.22 16
28 H 0.02 0.46 7.99 -51.93 -0.42 0.05 16
29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16
30 H 0.06 0.99 6.02 -51.93 -0.31 0.68 16
31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16
33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
34 H 0.07 0.75 8.06 -51.93 -0.42 0.33 16
35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16
37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
38 H 0.09 1.40 6.21 -51.93 -0.32 1.08 16
39 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16
40 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16
41 H 0.37 2.89 9.12 45.56 0.42 3.31 16
LS Contribution 320.60 15.07 4.83 4.83
Total: -1.00 -32.47 320.60 -8.88 -41.35
By element:
Atomic # 1 Polarization: 6.37 SS G_CDS: -6.68 Total: -0.31 kcal
Atomic # 6 Polarization: -17.80 SS G_CDS: -1.20 Total: -19.01 kcal
Atomic # 7 Polarization: -35.85 SS G_CDS: -0.33 Total: -36.18 kcal
Atomic # 8 Polarization: -7.42 SS G_CDS: -0.48 Total: -7.90 kcal
Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal
Total LS contribution 4.83 Total: 4.83 kcal
Total: -32.47 -8.88 -41.35 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000052759675.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -33.298 kcal
(2) G-P(sol) polarization free energy of solvation -32.468 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.766 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.348 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.645 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds