Wall clock time and date at job start Mon Mar 30 2020 03:18:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86801 * 119.99882 * 2 1
4 4 H 1.48502 * 109.47009 * 269.99793 * 3 2 1
5 5 H 1.48504 * 109.47177 * 29.99544 * 3 2 1
6 6 H 1.48502 * 109.47378 * 149.99651 * 3 2 1
7 7 C 1.37876 * 120.00571 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00399 * 179.97438 * 7 2 1
9 9 C 1.50702 * 119.99803 * 0.02562 * 7 2 1
10 10 C 1.53000 * 109.47164 * 179.97438 * 9 7 2
11 11 C 1.53000 * 109.46802 * 180.02562 * 10 9 7
12 12 N 1.46904 * 109.46634 * 174.67103 * 11 10 9
13 13 C 1.47445 * 111.00318 * 55.16036 * 12 11 10
14 14 C 1.54316 * 107.23571 * 123.25142 * 13 12 11
15 15 C 1.55264 * 103.08571 * 22.20593 * 14 13 12
16 16 C 1.47854 * 110.99568 * 175.99977 * 12 11 10
17 17 H 1.09000 * 110.37330 * 332.57351 * 16 12 11
18 18 C 1.52997 * 110.37086 * 94.80928 * 16 12 11
19 19 C 1.53000 * 109.47108 * 295.04529 * 18 16 12
20 20 C 1.53001 * 109.47156 * 185.56860 * 19 18 16
21 21 O 1.42900 * 109.47138 * 179.97438 * 20 19 18
22 22 H 0.96993 * 120.00305 * 0.02562 * 1 2 3
23 23 H 1.08998 * 109.47056 * 59.99123 * 9 7 2
24 24 H 1.09002 * 109.47006 * 299.99399 * 9 7 2
25 25 H 1.09000 * 109.47163 * 59.99465 * 10 9 7
26 26 H 1.09002 * 109.46936 * 299.99769 * 10 9 7
27 27 H 1.08994 * 109.47330 * 54.67435 * 11 10 9
28 28 H 1.08993 * 109.47235 * 294.66780 * 11 10 9
29 29 H 1.08994 * 109.88714 * 242.66309 * 13 12 11
30 30 H 1.09006 * 109.88395 * 3.84422 * 13 12 11
31 31 H 1.09002 * 110.70287 * 140.66668 * 14 13 12
32 32 H 1.08994 * 110.70457 * 263.72690 * 14 13 12
33 33 H 1.09001 * 111.08675 * 206.38132 * 15 14 13
34 34 H 1.08997 * 110.94083 * 82.52730 * 15 14 13
35 35 H 1.09002 * 109.46764 * 175.04702 * 18 16 12
36 36 H 1.08998 * 109.47107 * 55.04811 * 18 16 12
37 37 H 1.09004 * 109.46998 * 305.56672 * 19 18 16
38 38 H 1.09000 * 109.46837 * 65.56921 * 19 18 16
39 39 H 1.08995 * 109.47378 * 300.00284 * 20 19 18
40 40 H 1.09001 * 109.46725 * 60.00046 * 20 19 18
41 41 H 0.96699 * 113.99497 * 180.02562 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0464 -1.4001
5 1 1.4465 2.6527 0.7000
6 1 3.5466 1.4403 0.7001
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1939 0.0001
9 6 1.2512 -2.4991 0.0005
10 6 2.2455 -3.6620 0.0005
11 6 1.4805 -4.9870 -0.0001
12 7 2.4301 -6.1005 -0.1287
13 6 3.4589 -6.0422 0.9259
14 6 3.4097 -7.3836 1.6872
15 6 2.7456 -8.3443 0.6641
16 6 1.7354 -7.4025 -0.0373
17 1 0.8281 -7.3074 0.5593
18 6 1.4002 -7.9267 -1.4350
19 6 0.3939 -6.9882 -2.1039
20 6 -0.0467 -7.5834 -3.4427
21 8 -0.9871 -6.7072 -4.0672
22 1 -0.4850 0.8400 -0.0004
23 1 0.6248 -2.5570 -0.8896
24 1 0.6243 -2.5568 0.8904
25 1 2.8722 -3.6042 0.8905
26 1 2.8721 -3.6042 -0.8895
27 1 0.7845 -5.0044 -0.8387
28 1 0.9271 -5.0875 0.9335
29 1 4.4427 -5.9064 0.4770
30 1 3.2437 -5.2202 1.6087
31 1 4.4153 -7.7216 1.9376
32 1 2.7995 -7.2946 2.5859
33 1 2.2313 -9.1614 1.1701
34 1 3.4800 -8.7267 -0.0448
35 1 0.9689 -8.9245 -1.3550
36 1 2.3097 -7.9709 -2.0342
37 1 -0.4749 -6.8664 -1.4570
38 1 0.8596 -6.0174 -2.2736
39 1 0.8220 -7.7054 -4.0897
40 1 -0.5124 -8.5542 -3.2730
41 1 -1.3104 -7.0223 -4.9223
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000052759675.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:18:34
Heat of formation + Delta-G solvation = -97.828895 kcal
Electronic energy + Delta-G solvation = -17758.727618 eV
Core-core repulsion = 15057.378614 eV
Total energy + Delta-G solvation = -2701.349005 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.42476 -37.95514 -36.22365 -34.60842 -34.19236 -31.58144 -30.00409 -27.89566
-25.99905 -24.70522 -23.13096 -21.89840 -21.05798 -20.74310 -18.53569 -18.24376
-17.51114 -16.69231 -16.46836 -16.26611 -15.67915 -14.87187 -14.83870 -14.46144
-14.25405 -13.92757 -13.67959 -13.49360 -13.31993 -12.94934 -12.79090 -12.57975
-12.41446 -12.26651 -11.99428 -11.86393 -11.81995 -11.52040 -11.43267 -11.39418
-11.25297 -11.02703 -10.82535 -10.57201 -9.21768 -8.21544 -6.33585 1.38154
1.40627 1.51690 2.39687 3.03734 3.11080 3.32870 3.75153 3.84116
4.06005 4.10251 4.19417 4.23240 4.34855 4.36195 4.46635 4.57751
4.62943 4.67957 4.76877 4.79075 4.88383 4.95714 4.99410 5.05917
5.07900 5.11652 5.17256 5.24298 5.33722 5.42051 5.45420 5.51095
5.70713 5.82566 6.13963 6.18417 6.27458 6.82885 6.95339 7.35776
8.90713
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.018974 B = 0.005517 C = 0.004442
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1475.321224 B = 5073.688468 C = 6302.265214
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.935 5.935
2 C -0.002 4.002
3 Si 0.969 3.031
4 H -0.271 1.271
5 H -0.280 1.280
6 H -0.262 1.262
7 C -0.544 4.544
8 H 0.059 0.941
9 C 0.027 3.973
10 C -0.091 4.091
11 C 0.061 3.939
12 N -0.529 5.529
13 C 0.032 3.968
14 C -0.137 4.137
15 C -0.113 4.113
16 C 0.062 3.938
17 H 0.043 0.957
18 C -0.086 4.086
19 C -0.126 4.126
20 C 0.077 3.923
21 O -0.603 6.603
22 H 0.264 0.736
23 H -0.013 1.013
24 H -0.012 1.012
25 H 0.051 0.949
26 H 0.050 0.950
27 H 0.067 0.933
28 H 0.017 0.983
29 H 0.076 0.924
30 H 0.043 0.957
31 H 0.091 0.909
32 H 0.063 0.937
33 H 0.091 0.909
34 H 0.086 0.914
35 H 0.090 0.910
36 H 0.073 0.927
37 H 0.047 0.953
38 H 0.049 0.951
39 H 0.056 0.944
40 H 0.065 0.935
41 H 0.395 0.605
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.372 -20.712 -2.154 21.278
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.575 5.575
2 C -0.200 4.200
3 Si 0.793 3.207
4 H -0.197 1.197
5 H -0.205 1.205
6 H -0.186 1.186
7 C -0.582 4.582
8 H 0.077 0.923
9 C -0.010 4.010
10 C -0.129 4.129
11 C -0.067 4.067
12 N -0.254 5.254
13 C -0.096 4.096
14 C -0.175 4.175
15 C -0.150 4.150
16 C -0.046 4.046
17 H 0.061 0.939
18 C -0.124 4.124
19 C -0.164 4.164
20 C 0.000 4.000
21 O -0.412 6.412
22 H 0.073 0.927
23 H 0.006 0.994
24 H 0.006 0.994
25 H 0.070 0.930
26 H 0.068 0.932
27 H 0.086 0.914
28 H 0.035 0.965
29 H 0.094 0.906
30 H 0.061 0.939
31 H 0.110 0.890
32 H 0.082 0.918
33 H 0.110 0.890
34 H 0.104 0.896
35 H 0.108 0.892
36 H 0.092 0.908
37 H 0.066 0.934
38 H 0.068 0.932
39 H 0.074 0.926
40 H 0.083 0.917
41 H 0.245 0.755
Dipole moment (debyes) X Y Z Total
from point charges 4.571 -20.212 -2.099 20.829
hybrid contribution -0.606 1.043 0.305 1.244
sum 3.966 -19.169 -1.794 19.657
Atomic orbital electron populations
1.70108 1.07919 1.27848 1.51608 1.26037 0.95806 1.03544 0.94578
0.85398 0.78640 0.78123 0.78589 1.19674 1.20501 1.18624 1.21670
0.93479 0.92325 1.50702 0.92252 1.18951 0.94350 0.93312 0.94426
1.21466 0.97961 0.92997 1.00449 1.22277 0.94440 0.90881 0.99105
1.63569 1.13166 1.01924 1.46740 1.22917 0.96350 0.97928 0.92377
1.22785 1.02412 0.94347 0.97962 1.22735 0.97732 0.96962 0.97615
1.22770 0.96162 0.88947 0.96760 0.93931 1.21360 0.98618 0.98141
0.94277 1.21644 0.98761 1.00083 0.95869 1.22279 0.91654 0.92439
0.93653 1.86513 1.63365 1.51324 1.40006 0.92709 0.99435 0.99380
0.93031 0.93155 0.91438 0.96470 0.90591 0.93853 0.89021 0.91833
0.89035 0.89584 0.89167 0.90796 0.93418 0.93229 0.92590 0.91653
0.75496
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -59.30 13.29 21.45 0.28 -59.01 16
2 C 0.00 -0.13 5.46 84.65 0.46 0.34 16
3 Si 0.97 45.85 29.54 68.60 2.03 47.87 16
4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16
5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16
6 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16
7 C -0.54 -32.70 9.11 25.60 0.23 -32.47 16
8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16
9 C 0.03 1.55 4.97 29.85 0.15 1.69 16
10 C -0.09 -4.12 4.82 30.59 0.15 -3.97 16
11 C 0.06 2.34 4.45 86.30 0.38 2.73 16
12 N -0.53 -16.33 4.76 -860.63 -4.09 -20.42 16
13 C 0.03 0.89 6.19 86.65 0.54 1.42 16
14 C -0.14 -2.76 6.94 31.82 0.22 -2.54 16
15 C -0.11 -2.01 6.51 32.02 0.21 -1.80 16
16 C 0.06 1.49 2.58 45.38 0.12 1.61 16
17 H 0.04 1.12 7.71 -2.39 -0.02 1.11 16
18 C -0.09 -1.80 4.94 30.59 0.15 -1.65 16
19 C -0.13 -3.36 4.37 30.59 0.13 -3.22 16
20 C 0.08 1.65 7.05 71.98 0.51 2.16 16
21 O -0.60 -15.49 13.66 -148.98 -2.04 -17.53 16
22 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16
23 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16
24 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16
25 H 0.05 2.26 6.41 -2.39 -0.02 2.24 16
26 H 0.05 2.30 8.14 -2.39 -0.02 2.29 16
27 H 0.07 2.75 5.37 -2.39 -0.01 2.73 16
28 H 0.02 0.67 7.99 -2.39 -0.02 0.65 16
29 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16
30 H 0.04 1.36 6.02 -2.38 -0.01 1.35 16
31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16
32 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16
33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16
34 H 0.09 1.38 8.06 -2.39 -0.02 1.36 16
35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16
36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16
37 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16
38 H 0.05 1.68 6.21 -2.39 -0.01 1.66 16
39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16
40 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16
41 H 0.40 5.78 9.12 -74.06 -0.68 5.10 16
Total: -1.00 -71.91 320.60 -0.26 -72.18
By element:
Atomic # 1 Polarization: 12.31 SS G_CDS: 0.31 Total: 12.62 kcal
Atomic # 6 Polarization: -38.96 SS G_CDS: 3.25 Total: -35.70 kcal
Atomic # 7 Polarization: -75.63 SS G_CDS: -3.81 Total: -79.44 kcal
Atomic # 8 Polarization: -15.49 SS G_CDS: -2.04 Total: -17.53 kcal
Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal
Total: -71.91 -0.26 -72.18 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000052759675.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.654 kcal
(2) G-P(sol) polarization free energy of solvation -71.913 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.566 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.262 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.175 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.829 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds