Wall clock time and date at job start Mon Mar 30 2020 03:20:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53000 * 109.47001 * 2 1
4 4 C 1.53004 * 109.46738 * 119.99395 * 2 1 3
5 5 C 1.53002 * 109.46741 * 180.02562 * 4 2 1
6 6 C 1.53002 * 109.47248 * 299.99747 * 5 4 2
7 7 O 1.42901 * 109.47077 * 300.00741 * 6 5 4
8 8 C 1.52993 * 109.47169 * 180.02562 * 6 5 4
9 9 N 1.46905 * 109.47039 * 185.00340 * 8 6 5
10 10 C 1.46901 * 110.99870 * 180.02562 * 9 8 6
11 11 C 1.50697 * 109.46943 * 180.02562 * 10 9 8
12 12 H 1.08000 * 120.00162 * 359.97438 * 11 10 9
13 13 C 1.37883 * 120.00023 * 180.02562 * 11 10 9
14 14 N 1.31517 * 119.99532 * 359.97438 * 13 11 10
15 15 Si 1.86794 * 120.00003 * 179.97438 * 13 11 10
16 16 H 1.48499 * 109.47381 * 359.97438 * 15 13 11
17 17 H 1.48508 * 109.47001 * 119.99934 * 15 13 11
18 18 H 1.48497 * 109.47392 * 239.99632 * 15 13 11
19 19 C 1.53004 * 109.46529 * 60.00305 * 6 5 4
20 20 C 1.52989 * 109.47394 * 239.99407 * 2 1 3
21 21 H 1.08995 * 109.47600 * 300.00502 * 1 2 3
22 22 H 1.08998 * 109.47083 * 60.00419 * 1 2 3
23 23 H 1.09002 * 109.47042 * 180.02562 * 1 2 3
24 24 H 1.08996 * 109.47231 * 179.97438 * 3 2 1
25 25 H 1.08998 * 109.46860 * 299.99718 * 3 2 1
26 26 H 1.08995 * 109.47354 * 59.99347 * 3 2 1
27 27 H 1.09002 * 109.47221 * 60.00272 * 4 2 1
28 28 H 1.08995 * 109.47159 * 300.00373 * 4 2 1
29 29 H 1.08998 * 109.46562 * 180.02562 * 5 4 2
30 30 H 1.08994 * 109.47212 * 60.00595 * 5 4 2
31 31 H 0.96709 * 113.99336 * 179.97438 * 7 6 5
32 32 H 1.09001 * 109.47393 * 65.00621 * 8 6 5
33 33 H 1.08998 * 109.47408 * 305.00267 * 8 6 5
34 34 H 1.00901 * 110.99869 * 56.04956 * 9 8 6
35 35 H 1.09004 * 109.47031 * 299.99620 * 10 9 8
36 36 H 1.08995 * 109.47111 * 59.99900 * 10 9 8
37 37 H 0.97001 * 119.99132 * 180.02562 * 14 13 11
38 38 H 1.09002 * 109.47371 * 60.00221 * 19 6 5
39 39 H 1.09006 * 109.47007 * 180.02562 * 19 6 5
40 40 H 1.08994 * 109.47741 * 300.00261 * 20 2 1
41 41 H 1.09008 * 109.47113 * 60.00494 * 20 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0399 -0.7212 1.2494
5 6 3.5700 -0.7206 1.2497
6 6 4.0805 -1.4417 0.0006
7 8 3.6045 -2.7891 0.0004
8 6 5.6105 -1.4417 0.0012
9 7 6.1007 -2.0267 -1.2540
10 6 7.5692 -2.0438 -1.2886
11 6 8.0340 -2.6489 -2.5881
12 1 7.3108 -2.9873 -3.3154
13 6 9.3825 -2.7714 -2.8483
14 7 10.2630 -2.3598 -1.9624
15 14 9.9586 -3.5220 -4.4588
16 1 8.7795 -3.9027 -5.2773
17 1 10.7783 -2.5311 -5.2015
18 1 10.7761 -4.7295 -4.1778
19 6 3.5705 -0.7204 -1.2487
20 6 2.0401 -0.7213 -1.2491
21 1 -0.3634 0.5139 0.8899
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3633 -1.0277 0.0005
24 1 3.1299 1.4426 0.0005
25 1 1.6767 1.9563 -0.8900
26 1 1.6766 1.9564 0.8899
27 1 1.6766 -1.7488 1.2495
28 1 1.6765 -0.2073 2.1392
29 1 3.9332 -1.2347 2.1395
30 1 3.9329 0.3071 1.2499
31 1 3.8900 -3.3069 -0.7649
32 1 5.9735 -2.0313 0.8430
33 1 5.9738 -0.4180 0.0912
34 1 5.7255 -1.5366 -2.0521
35 1 7.9464 -1.0244 -1.2074
36 1 7.9453 -2.6378 -0.4557
37 1 11.2117 -2.4457 -2.1456
38 1 3.9335 0.3074 -1.2486
39 1 3.9339 -1.2344 -2.1387
40 1 1.6768 -1.7489 -1.2491
41 1 1.6768 -0.2075 -2.1392
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000083469196.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:20:45
Heat of formation + Delta-G solvation = -82.380988 kcal
Electronic energy + Delta-G solvation = -18335.842255 eV
Core-core repulsion = 15635.163121 eV
Total energy + Delta-G solvation = -2700.679133 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.00871 -36.56542 -34.51451 -32.48551 -31.47815 -30.72037 -27.96686 -27.36224
-25.70848 -23.27501 -22.79104 -21.25169 -20.12746 -18.44495 -16.64431 -15.84705
-15.48615 -14.94834 -14.58758 -14.55614 -14.11810 -13.95510 -13.67590 -13.09512
-12.80454 -12.49653 -12.26658 -11.92556 -11.84692 -11.71280 -11.53249 -11.35574
-11.20217 -11.11742 -10.88530 -10.70496 -10.59165 -10.35491 -10.19645 -10.05660
-9.72824 -9.34532 -9.05815 -8.50733 -7.36715 -6.05352 -4.07603 3.29608
3.36955 3.41692 4.40830 4.51662 4.66456 4.77985 4.88580 5.03858
5.15165 5.26368 5.30806 5.43878 5.47300 5.56473 5.57828 5.66981
5.70863 5.76714 5.82973 5.93397 5.97171 6.00281 6.06622 6.13483
6.17340 6.28219 6.33718 6.37439 6.49155 6.57340 6.64581 7.22182
7.38868 7.74832 8.08700 8.17246 8.33226 8.56639 9.01588 9.57547
11.05838
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.045635 B = 0.004677 C = 0.004567
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 613.422830 B = 5985.337226 C = 6129.613135
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.065 4.065
3 C -0.146 4.146
4 C -0.101 4.101
5 C -0.107 4.107
6 C 0.144 3.856
7 O -0.558 6.558
8 C 0.031 3.969
9 N -0.691 5.691
10 C 0.194 3.806
11 C -0.514 4.514
12 H 0.062 0.938
13 C 0.055 3.945
14 N -0.898 5.898
15 Si 0.899 3.101
16 H -0.272 1.272
17 H -0.285 1.285
18 H -0.284 1.284
19 C -0.150 4.150
20 C -0.100 4.100
21 H 0.051 0.949
22 H 0.051 0.949
23 H 0.054 0.946
24 H 0.061 0.939
25 H 0.051 0.949
26 H 0.050 0.950
27 H 0.070 0.930
28 H 0.055 0.945
29 H 0.066 0.934
30 H 0.072 0.928
31 H 0.383 0.617
32 H 0.071 0.929
33 H 0.023 0.977
34 H 0.327 0.673
35 H -0.014 1.014
36 H 0.028 0.972
37 H 0.261 0.739
38 H 0.067 0.933
39 H 0.073 0.927
40 H 0.068 0.932
41 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.216 5.957 4.248 18.706
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.065 4.065
3 C -0.203 4.203
4 C -0.138 4.138
5 C -0.144 4.144
6 C 0.102 3.898
7 O -0.365 6.365
8 C -0.099 4.099
9 N -0.322 5.322
10 C 0.068 3.932
11 C -0.553 4.553
12 H 0.081 0.919
13 C -0.146 4.146
14 N -0.537 5.537
15 Si 0.727 3.273
16 H -0.196 1.196
17 H -0.211 1.211
18 H -0.210 1.210
19 C -0.188 4.188
20 C -0.138 4.138
21 H 0.070 0.930
22 H 0.070 0.930
23 H 0.073 0.927
24 H 0.080 0.920
25 H 0.070 0.930
26 H 0.069 0.931
27 H 0.089 0.911
28 H 0.073 0.927
29 H 0.085 0.915
30 H 0.090 0.910
31 H 0.232 0.768
32 H 0.089 0.911
33 H 0.041 0.959
34 H 0.145 0.855
35 H 0.004 0.996
36 H 0.046 0.954
37 H 0.071 0.929
38 H 0.086 0.914
39 H 0.092 0.908
40 H 0.086 0.914
41 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -17.331 5.512 5.063 18.879
hybrid contribution 1.096 0.456 -1.478 1.896
sum -16.236 5.968 3.585 17.666
Atomic orbital electron populations
1.21848 0.95033 1.01577 1.01230 1.20535 0.94834 0.95273 0.95898
1.21987 1.01654 0.95515 1.01155 1.21481 0.95159 1.00865 0.96343
1.21537 0.96007 0.99740 0.97148 1.21072 0.91773 0.82803 0.94110
1.86347 1.76585 1.22963 1.50568 1.22602 0.94136 0.97506 0.95652
1.60699 1.12760 1.56859 1.01902 1.19548 0.80606 0.95218 0.97877
1.21212 0.91607 1.40096 1.02371 0.91933 1.25000 0.96750 0.95691
0.97160 1.69979 1.01462 1.47437 1.34818 0.86425 0.78691 0.78835
0.83351 1.19646 1.21099 1.20969 1.22280 0.96096 1.01250 0.99132
1.21483 0.95238 1.00671 0.96385 0.93010 0.92970 0.92721 0.91978
0.93019 0.93077 0.91101 0.92658 0.91534 0.90951 0.76818 0.91098
0.95876 0.85512 0.99641 0.95405 0.92946 0.91408 0.90826 0.91380
0.92602
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.29 8.47 37.16 0.31 -0.98 16
2 C -0.07 -0.69 0.77 -154.51 -0.12 -0.81 16
3 C -0.15 -1.46 7.78 37.16 0.29 -1.17 16
4 C -0.10 -1.16 4.59 -26.73 -0.12 -1.28 16
5 C -0.11 -1.37 4.67 -26.73 -0.12 -1.49 16
6 C 0.14 2.09 0.79 -90.62 -0.07 2.02 16
7 O -0.56 -8.66 11.63 -35.23 -0.41 -9.07 16
8 C 0.03 0.56 4.93 -3.82 -0.02 0.54 16
9 N -0.69 -14.39 6.01 -115.06 -0.69 -15.08 16
10 C 0.19 5.10 5.44 -4.98 -0.03 5.07 16
11 C -0.51 -14.52 9.32 -34.44 -0.32 -14.85 16
12 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16
13 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16
14 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16
15 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16
16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16
17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
19 C -0.15 -1.98 4.19 -26.71 -0.11 -2.09 16
20 C -0.10 -1.16 4.59 -26.71 -0.12 -1.29 16
21 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16
23 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16
24 H 0.06 0.66 4.81 -51.93 -0.25 0.42 16
25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16
26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16
27 H 0.07 0.90 7.68 -51.93 -0.40 0.50 16
28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16
29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
30 H 0.07 0.87 6.43 -51.93 -0.33 0.54 16
31 H 0.38 5.76 8.66 45.56 0.39 6.15 16
32 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16
33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16
34 H 0.33 6.47 6.61 -39.29 -0.26 6.21 16
35 H -0.01 -0.40 8.14 -51.93 -0.42 -0.82 16
36 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16
37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16
38 H 0.07 0.88 6.43 -51.93 -0.33 0.55 16
39 H 0.07 1.03 6.52 -51.93 -0.34 0.70 16
40 H 0.07 0.84 7.68 -51.93 -0.40 0.44 16
41 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16
LS Contribution 311.40 15.07 4.69 4.69
Total: -1.00 -29.50 311.40 -7.76 -37.26
By element:
Atomic # 1 Polarization: 13.13 SS G_CDS: -6.54 Total: 6.59 kcal
Atomic # 6 Polarization: -14.30 SS G_CDS: -0.53 Total: -14.83 kcal
Atomic # 7 Polarization: -41.32 SS G_CDS: 0.04 Total: -41.28 kcal
Atomic # 8 Polarization: -8.66 SS G_CDS: -0.41 Total: -9.07 kcal
Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal
Total LS contribution 4.69 Total: 4.69 kcal
Total: -29.50 -7.76 -37.26 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000083469196.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -45.116 kcal
(2) G-P(sol) polarization free energy of solvation -29.503 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.620 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.265 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.381 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds