Wall clock time and date at job start Mon Mar 30 2020 03:54:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53004 * 109.47225 * 2 1
4 4 C 1.53001 * 109.47136 * 120.00263 * 2 1 3
5 5 C 1.53004 * 109.47355 * 173.67877 * 4 2 1
6 6 H 1.09006 * 109.46483 * 306.55808 * 5 4 2
7 7 C 1.52998 * 109.47046 * 186.56138 * 5 4 2
8 8 O 1.42895 * 109.47352 * 304.99260 * 7 5 4
9 9 N 1.46900 * 109.47535 * 66.55679 * 5 4 2
10 10 C 1.46893 * 111.00017 * 201.32719 * 9 5 4
11 11 C 1.53006 * 109.47184 * 184.94676 * 10 9 5
12 12 C 1.50703 * 115.54667 * 320.70054 * 11 10 9
13 13 H 1.07997 * 120.00398 * 276.04324 * 12 11 10
14 14 C 1.37875 * 119.99766 * 96.04967 * 12 11 10
15 15 N 1.31510 * 120.00289 * 182.09314 * 14 12 11
16 16 Si 1.86803 * 120.00223 * 2.08993 * 14 12 11
17 17 H 1.48503 * 109.47437 * 93.18846 * 16 14 12
18 18 H 1.48497 * 109.47394 * 213.19032 * 16 14 12
19 19 H 1.48500 * 109.46865 * 333.19164 * 16 14 12
20 20 C 1.52995 * 117.49856 * 175.03237 * 11 10 9
21 21 C 1.52999 * 60.02963 * 252.49781 * 20 11 10
22 22 H 1.08998 * 109.47284 * 299.99686 * 1 2 3
23 23 H 1.09001 * 109.46916 * 59.99905 * 1 2 3
24 24 H 1.09002 * 109.47077 * 179.97438 * 1 2 3
25 25 H 1.09007 * 109.47372 * 240.00089 * 2 1 3
26 26 H 1.08997 * 109.46427 * 68.36805 * 3 2 1
27 27 H 1.09002 * 109.47010 * 188.36206 * 3 2 1
28 28 H 1.08992 * 109.46725 * 308.36584 * 3 2 1
29 29 H 1.08996 * 109.47228 * 53.67458 * 4 2 1
30 30 H 1.09007 * 109.46978 * 293.67011 * 4 2 1
31 31 H 1.08996 * 109.47175 * 64.99725 * 7 5 4
32 32 H 1.09004 * 109.47147 * 184.99640 * 7 5 4
33 33 H 0.96696 * 114.00346 * 180.02562 * 8 7 5
34 34 H 1.00901 * 110.99741 * 77.37177 * 9 5 4
35 35 H 1.09007 * 109.47140 * 64.94979 * 10 9 5
36 36 H 1.09001 * 109.47561 * 304.95067 * 10 9 5
37 37 H 0.96999 * 120.00548 * 180.02562 * 15 14 12
38 38 H 1.08994 * 117.50175 * 359.97438 * 20 11 10
39 39 H 1.08998 * 117.49758 * 145.00525 * 20 11 10
40 40 H 1.09006 * 117.49487 * 107.50122 * 21 20 11
41 41 H 1.08998 * 117.50335 * 252.51685 * 21 20 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0399 -0.7213 1.2492
5 6 3.5617 -0.8603 1.1724
6 1 3.8362 -1.3326 0.2291
7 6 4.0545 -1.7221 2.3366
8 8 3.5950 -1.1650 3.5696
9 7 4.1797 0.4700 1.2520
10 6 5.5373 0.4541 0.6912
11 6 6.1924 1.8206 0.9026
12 6 5.2885 3.0112 0.7117
13 1 5.1188 3.4071 -0.2787
14 6 4.6782 3.5952 1.8014
15 7 3.8571 4.6082 1.6307
16 14 5.0175 2.9475 3.5204
17 1 6.1310 3.7187 4.1292
18 1 3.7983 3.0959 4.3550
19 1 5.3932 1.5128 3.4435
20 6 7.6579 1.9728 0.4903
21 6 7.2821 1.9244 1.9726
22 1 -0.3634 0.5138 0.8900
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 1.8933 -0.5138 -0.8900
26 1 1.8039 1.9112 0.9553
27 1 3.1197 1.4461 -0.1495
28 1 1.5597 1.9976 -0.8057
29 1 1.5871 -1.7110 1.3076
30 1 1.7721 -0.1462 2.1356
31 1 3.6666 -2.7350 2.2285
32 1 5.1442 -1.7482 2.3335
33 1 3.8710 -1.6609 4.3524
34 1 4.1847 0.8101 2.2019
35 1 5.4873 0.2364 -0.3757
36 1 6.1281 -0.3133 1.1913
37 1 3.4280 5.0193 2.3974
38 1 8.1554 1.0995 0.0688
39 1 7.9682 2.9342 0.0810
40 1 7.5323 1.0192 2.5259
41 1 7.3449 2.8539 2.5384
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000083853902.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:54:44
Heat of formation + Delta-G solvation = -29.701878 kcal
Electronic energy + Delta-G solvation = -19139.198143 eV
Core-core repulsion = 16440.803347 eV
Total energy + Delta-G solvation = -2698.394796 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-38.46543 -36.82017 -35.63576 -33.39385 -31.88729 -29.46807 -26.33831 -25.59621
-25.41802 -24.19302 -21.69296 -20.29982 -19.55066 -18.68519 -17.23904 -16.34085
-15.33947 -14.90738 -14.73204 -14.13960 -14.05023 -13.55873 -12.92531 -12.88390
-12.75552 -12.48212 -12.30324 -11.80535 -11.48920 -11.43150 -11.06142 -10.86579
-10.71251 -10.54142 -10.24862 -10.15383 -10.02585 -9.86583 -9.81291 -9.72452
-9.27419 -8.98116 -8.40268 -8.29900 -7.21795 -5.91974 -3.90146 3.37586
3.49722 3.51360 4.39931 4.55965 4.85216 5.05691 5.13113 5.30634
5.38909 5.50977 5.56904 5.66667 5.75747 5.83345 5.90043 6.04107
6.14858 6.18212 6.25278 6.28603 6.32985 6.39050 6.48261 6.56014
6.63463 6.74215 6.79426 6.83824 7.08492 7.11717 7.13435 7.33171
7.72719 7.84394 7.99467 8.06184 8.33283 8.67295 9.10242 9.72782
11.20698
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.019356 B = 0.010618 C = 0.009341
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1446.261124 B = 2636.446672 C = 2996.703716
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.087 4.087
3 C -0.140 4.140
4 C -0.093 4.093
5 C 0.084 3.916
6 H 0.083 0.917
7 C 0.041 3.959
8 O -0.563 6.563
9 N -0.643 5.643
10 C 0.096 3.904
11 C 0.005 3.995
12 C -0.461 4.461
13 H 0.077 0.923
14 C 0.088 3.912
15 N -0.897 5.897
16 Si 0.882 3.118
17 H -0.292 1.292
18 H -0.299 1.299
19 H -0.260 1.260
20 C -0.183 4.183
21 C -0.210 4.210
22 H 0.050 0.950
23 H 0.048 0.952
24 H 0.041 0.959
25 H 0.054 0.946
26 H 0.045 0.955
27 H 0.114 0.886
28 H 0.022 0.978
29 H 0.048 0.952
30 H 0.068 0.932
31 H 0.041 0.959
32 H 0.040 0.960
33 H 0.371 0.629
34 H 0.350 0.650
35 H 0.062 0.938
36 H 0.000 1.000
37 H 0.260 0.740
38 H 0.068 0.932
39 H 0.087 0.913
40 H 0.068 0.932
41 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.714 -12.878 0.720 12.918
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.106 4.106
3 C -0.197 4.197
4 C -0.131 4.131
5 C -0.027 4.027
6 H 0.101 0.899
7 C -0.039 4.039
8 O -0.367 6.367
9 N -0.277 5.277
10 C -0.033 4.033
11 C 0.004 3.996
12 C -0.499 4.499
13 H 0.095 0.905
14 C -0.114 4.114
15 N -0.535 5.535
16 Si 0.713 3.287
17 H -0.220 1.220
18 H -0.226 1.226
19 H -0.185 1.185
20 C -0.221 4.221
21 C -0.247 4.247
22 H 0.069 0.931
23 H 0.067 0.933
24 H 0.060 0.940
25 H 0.073 0.927
26 H 0.064 0.936
27 H 0.132 0.868
28 H 0.041 0.959
29 H 0.067 0.933
30 H 0.086 0.914
31 H 0.059 0.941
32 H 0.058 0.942
33 H 0.217 0.783
34 H 0.173 0.827
35 H 0.080 0.920
36 H 0.018 0.982
37 H 0.070 0.930
38 H 0.087 0.913
39 H 0.105 0.895
40 H 0.086 0.914
41 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -1.407 -12.058 -0.172 12.141
hybrid contribution 0.945 -1.282 2.232 2.742
sum -0.461 -13.340 2.060 13.506
Atomic orbital electron populations
1.21881 0.96976 1.00112 1.01345 1.21048 0.93774 0.98988 0.96756
1.22040 1.05903 0.91877 0.99927 1.21483 0.93516 0.99078 0.99049
1.21811 0.95913 0.90152 0.94843 0.89945 1.23072 0.97492 0.96778
0.86530 1.86550 1.78506 1.56080 1.15606 1.60832 1.19499 1.19767
1.27583 1.21605 0.88275 0.95281 0.98186 1.19583 0.87466 0.95063
0.97516 1.19998 1.25415 1.09141 0.95318 0.90511 1.24815 0.94169
0.94240 0.98155 1.69869 1.29679 1.23511 1.30465 0.87001 0.76320
0.79883 0.85481 1.21989 1.22646 1.18516 1.22874 1.01507 1.00966
0.96747 1.23015 1.08881 1.00772 0.91996 0.93096 0.93271 0.94029
0.92731 0.93593 0.86750 0.95926 0.93296 0.91370 0.94125 0.94161
0.78283 0.82701 0.91990 0.98165 0.92960 0.91319 0.89494 0.91378
0.89798
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.14 9.18 37.15 0.34 -1.80 16
2 C -0.09 -1.44 2.90 -90.62 -0.26 -1.71 16
3 C -0.14 -2.88 8.25 37.16 0.31 -2.58 16
4 C -0.09 -1.51 4.17 -26.73 -0.11 -1.62 16
5 C 0.08 1.38 2.37 -67.71 -0.16 1.22 16
6 H 0.08 1.24 7.90 -51.93 -0.41 0.83 16
7 C 0.04 0.59 6.71 37.16 0.25 0.84 16
8 O -0.56 -8.69 12.29 -35.23 -0.43 -9.12 16
9 N -0.64 -12.98 2.23 -106.72 -0.24 -13.21 16
10 C 0.10 1.92 5.55 -3.82 -0.02 1.90 16
11 C 0.00 0.11 1.41 -155.62 -0.22 -0.11 16
12 C -0.46 -12.47 8.42 -34.44 -0.29 -12.76 16
13 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16
14 C 0.09 2.46 5.43 -17.82 -0.10 2.37 16
15 N -0.90 -26.99 13.96 55.43 0.77 -26.21 16
16 Si 0.88 22.20 22.60 -169.99 -3.84 18.36 16
17 H -0.29 -7.40 7.03 56.52 0.40 -7.00 16
18 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16
19 H -0.26 -6.15 5.25 56.52 0.30 -5.86 16
20 C -0.18 -3.72 9.95 -26.73 -0.27 -3.98 16
21 C -0.21 -4.53 6.90 -26.70 -0.18 -4.71 16
22 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16
23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
24 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16
25 H 0.05 0.86 8.13 -51.92 -0.42 0.44 16
26 H 0.04 1.05 8.10 -51.93 -0.42 0.63 16
27 H 0.11 2.60 5.35 -51.93 -0.28 2.33 16
28 H 0.02 0.45 8.13 -51.93 -0.42 0.02 16
29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
30 H 0.07 1.26 7.75 -51.93 -0.40 0.86 16
31 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16
32 H 0.04 0.58 7.05 -51.93 -0.37 0.22 16
33 H 0.37 3.90 9.12 45.56 0.42 4.32 16
34 H 0.35 7.82 4.19 -39.29 -0.16 7.66 16
35 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16
36 H 0.00 0.01 6.82 -51.93 -0.35 -0.35 16
37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16
38 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16
39 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16
40 H 0.07 1.35 8.08 -51.93 -0.42 0.93 16
41 H 0.08 1.94 5.97 -51.93 -0.31 1.63 16
LS Contribution 309.81 15.07 4.67 4.67
Total: -1.00 -29.73 309.81 -6.39 -36.12
By element:
Atomic # 1 Polarization: 18.94 SS G_CDS: -6.60 Total: 12.34 kcal
Atomic # 6 Polarization: -22.22 SS G_CDS: -0.72 Total: -22.94 kcal
Atomic # 7 Polarization: -39.96 SS G_CDS: 0.54 Total: -39.43 kcal
Atomic # 8 Polarization: -8.69 SS G_CDS: -0.43 Total: -9.12 kcal
Atomic # 14 Polarization: 22.20 SS G_CDS: -3.84 Total: 18.36 kcal
Total LS contribution 4.67 Total: 4.67 kcal
Total: -29.73 -6.39 -36.12 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000083853902.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.419 kcal
(2) G-P(sol) polarization free energy of solvation -29.732 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.313 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.389 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.121 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.702 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds