Wall clock time and date at job start Mon Mar 30 2020 03:54:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53004 * 109.47225 * 2 1
4 4 C 1.53001 * 109.47136 * 120.00263 * 2 1 3
5 5 C 1.53004 * 109.47355 * 173.67877 * 4 2 1
6 6 H 1.09006 * 109.46483 * 306.55808 * 5 4 2
7 7 C 1.52998 * 109.47046 * 186.56138 * 5 4 2
8 8 O 1.42895 * 109.47352 * 304.99260 * 7 5 4
9 9 N 1.46900 * 109.47535 * 66.55679 * 5 4 2
10 10 C 1.46893 * 111.00017 * 201.32719 * 9 5 4
11 11 C 1.53006 * 109.47184 * 184.94676 * 10 9 5
12 12 C 1.50703 * 115.54667 * 320.70054 * 11 10 9
13 13 H 1.07997 * 120.00398 * 276.04324 * 12 11 10
14 14 C 1.37875 * 119.99766 * 96.04967 * 12 11 10
15 15 N 1.31510 * 120.00289 * 182.09314 * 14 12 11
16 16 Si 1.86803 * 120.00223 * 2.08993 * 14 12 11
17 17 H 1.48503 * 109.47437 * 93.18846 * 16 14 12
18 18 H 1.48497 * 109.47394 * 213.19032 * 16 14 12
19 19 H 1.48500 * 109.46865 * 333.19164 * 16 14 12
20 20 C 1.52995 * 117.49856 * 175.03237 * 11 10 9
21 21 C 1.52999 * 60.02963 * 252.49781 * 20 11 10
22 22 H 1.08998 * 109.47284 * 299.99686 * 1 2 3
23 23 H 1.09001 * 109.46916 * 59.99905 * 1 2 3
24 24 H 1.09002 * 109.47077 * 179.97438 * 1 2 3
25 25 H 1.09007 * 109.47372 * 240.00089 * 2 1 3
26 26 H 1.08997 * 109.46427 * 68.36805 * 3 2 1
27 27 H 1.09002 * 109.47010 * 188.36206 * 3 2 1
28 28 H 1.08992 * 109.46725 * 308.36584 * 3 2 1
29 29 H 1.08996 * 109.47228 * 53.67458 * 4 2 1
30 30 H 1.09007 * 109.46978 * 293.67011 * 4 2 1
31 31 H 1.08996 * 109.47175 * 64.99725 * 7 5 4
32 32 H 1.09004 * 109.47147 * 184.99640 * 7 5 4
33 33 H 0.96696 * 114.00346 * 180.02562 * 8 7 5
34 34 H 1.00901 * 110.99741 * 77.37177 * 9 5 4
35 35 H 1.09007 * 109.47140 * 64.94979 * 10 9 5
36 36 H 1.09001 * 109.47561 * 304.95067 * 10 9 5
37 37 H 0.96999 * 120.00548 * 180.02562 * 15 14 12
38 38 H 1.08994 * 117.50175 * 359.97438 * 20 11 10
39 39 H 1.08998 * 117.49758 * 145.00525 * 20 11 10
40 40 H 1.09006 * 117.49487 * 107.50122 * 21 20 11
41 41 H 1.08998 * 117.50335 * 252.51685 * 21 20 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0399 -0.7213 1.2492
5 6 3.5617 -0.8603 1.1724
6 1 3.8362 -1.3326 0.2291
7 6 4.0545 -1.7221 2.3366
8 8 3.5950 -1.1650 3.5696
9 7 4.1797 0.4700 1.2520
10 6 5.5373 0.4541 0.6912
11 6 6.1924 1.8206 0.9026
12 6 5.2885 3.0112 0.7117
13 1 5.1188 3.4071 -0.2787
14 6 4.6782 3.5952 1.8014
15 7 3.8571 4.6082 1.6307
16 14 5.0175 2.9475 3.5204
17 1 6.1310 3.7187 4.1292
18 1 3.7983 3.0959 4.3550
19 1 5.3932 1.5128 3.4435
20 6 7.6579 1.9728 0.4903
21 6 7.2821 1.9244 1.9726
22 1 -0.3634 0.5138 0.8900
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 1.8933 -0.5138 -0.8900
26 1 1.8039 1.9112 0.9553
27 1 3.1197 1.4461 -0.1495
28 1 1.5597 1.9976 -0.8057
29 1 1.5871 -1.7110 1.3076
30 1 1.7721 -0.1462 2.1356
31 1 3.6666 -2.7350 2.2285
32 1 5.1442 -1.7482 2.3335
33 1 3.8710 -1.6609 4.3524
34 1 4.1847 0.8101 2.2019
35 1 5.4873 0.2364 -0.3757
36 1 6.1281 -0.3133 1.1913
37 1 3.4280 5.0193 2.3974
38 1 8.1554 1.0995 0.0688
39 1 7.9682 2.9342 0.0810
40 1 7.5323 1.0192 2.5259
41 1 7.3449 2.8539 2.5384
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000083853902.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:54:43
Heat of formation + Delta-G solvation = -50.549669 kcal
Electronic energy + Delta-G solvation = -19140.102171 eV
Core-core repulsion = 16440.803347 eV
Total energy + Delta-G solvation = -2699.298824 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-39.85125 -38.38345 -36.86739 -34.81026 -34.03799 -30.83502 -27.73111 -27.60744
-26.71484 -25.78587 -23.35959 -21.57478 -21.01147 -20.45349 -18.45039 -18.18003
-16.83264 -16.55126 -16.27775 -15.70001 -15.25516 -14.97680 -14.67690 -14.57275
-14.24867 -14.02648 -13.71120 -13.36539 -13.01816 -12.89113 -12.72428 -12.67950
-12.12581 -12.04678 -11.98604 -11.80757 -11.46714 -11.38793 -11.25476 -11.16831
-10.92856 -10.79936 -10.44878 -10.10714 -8.65951 -8.12265 -6.11736 1.34100
1.42257 1.49161 2.44938 3.14756 3.28564 3.38800 3.71405 3.88959
4.15241 4.21944 4.28590 4.36670 4.41309 4.49683 4.51602 4.56882
4.66079 4.76200 4.84322 4.90924 4.93497 5.02842 5.06749 5.07630
5.13762 5.27151 5.34792 5.41799 5.45072 5.49372 5.56879 5.75630
5.85575 6.24563 6.44260 6.58169 6.73660 6.90762 6.93160 7.54227
9.04221
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.019356 B = 0.010618 C = 0.009341
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1446.261124 B = 2636.446672 C = 2996.703716
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.082 4.082
3 C -0.129 4.129
4 C -0.087 4.087
5 C 0.076 3.924
6 H 0.101 0.899
7 C 0.045 3.955
8 O -0.590 6.590
9 N -0.666 5.666
10 C 0.105 3.895
11 C -0.024 4.024
12 C -0.447 4.447
13 H 0.030 0.970
14 C 0.040 3.960
15 N -0.948 5.948
16 Si 0.937 3.063
17 H -0.294 1.294
18 H -0.315 1.315
19 H -0.231 1.231
20 C -0.164 4.164
21 C -0.208 4.208
22 H 0.038 0.962
23 H 0.050 0.950
24 H 0.069 0.931
25 H 0.071 0.929
26 H 0.009 0.991
27 H 0.093 0.907
28 H 0.013 0.987
29 H 0.079 0.921
30 H 0.038 0.962
31 H 0.072 0.928
32 H 0.043 0.957
33 H 0.391 0.609
34 H 0.334 0.666
35 H 0.068 0.932
36 H 0.025 0.975
37 H 0.256 0.744
38 H 0.106 0.894
39 H 0.076 0.924
40 H 0.095 0.905
41 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.267 -16.529 0.963 16.559
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.100 4.100
3 C -0.186 4.186
4 C -0.125 4.125
5 C -0.034 4.034
6 H 0.118 0.882
7 C -0.034 4.034
8 O -0.397 6.397
9 N -0.298 5.298
10 C -0.024 4.024
11 C -0.025 4.025
12 C -0.484 4.484
13 H 0.049 0.951
14 C -0.156 4.156
15 N -0.589 5.589
16 Si 0.768 3.232
17 H -0.221 1.221
18 H -0.244 1.244
19 H -0.155 1.155
20 C -0.202 4.202
21 C -0.245 4.245
22 H 0.057 0.943
23 H 0.069 0.931
24 H 0.088 0.912
25 H 0.089 0.911
26 H 0.028 0.972
27 H 0.111 0.889
28 H 0.032 0.968
29 H 0.097 0.903
30 H 0.057 0.943
31 H 0.090 0.910
32 H 0.061 0.939
33 H 0.240 0.760
34 H 0.155 0.845
35 H 0.086 0.914
36 H 0.043 0.957
37 H 0.065 0.935
38 H 0.125 0.875
39 H 0.094 0.906
40 H 0.114 0.886
41 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -0.393 -15.755 0.062 15.760
hybrid contribution 0.641 -0.102 2.048 2.148
sum 0.248 -15.857 2.110 15.998
Atomic orbital electron populations
1.21839 0.95432 1.01793 1.00917 1.21003 0.95109 0.95988 0.97945
1.21882 1.04541 0.94808 0.97391 1.21428 0.93937 0.99931 0.97175
1.21973 0.95535 0.88910 0.96950 0.88153 1.22998 0.97611 0.97495
0.85278 1.86511 1.78958 1.57376 1.16879 1.60763 1.19890 1.22708
1.26476 1.21479 0.88379 0.93712 0.98874 1.19594 0.88004 0.94836
1.00022 1.20078 1.25242 1.10169 0.92959 0.95136 1.25425 0.94153
0.94439 1.01608 1.70022 1.31970 1.25765 1.31147 0.86103 0.75164
0.80916 0.81044 1.22118 1.24441 1.15464 1.22913 0.99290 1.02091
0.95893 1.23026 1.07841 1.01059 0.92565 0.94298 0.93056 0.91206
0.91072 0.97209 0.88867 0.96831 0.90254 0.94302 0.90965 0.93867
0.75974 0.84462 0.91389 0.95700 0.93478 0.87545 0.90584 0.88625
0.91791
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.93 9.18 71.98 0.66 -3.27 16
2 C -0.08 -2.60 2.90 -10.79 -0.03 -2.63 16
3 C -0.13 -5.46 8.25 71.98 0.59 -4.87 16
4 C -0.09 -2.62 4.17 30.60 0.13 -2.49 16
5 C 0.08 2.28 2.37 44.92 0.11 2.38 16
6 H 0.10 2.62 7.90 -2.38 -0.02 2.60 16
7 C 0.05 1.12 6.71 71.98 0.48 1.60 16
8 O -0.59 -16.40 12.29 -148.98 -1.83 -18.23 16
9 N -0.67 -25.89 2.23 -491.55 -1.09 -26.98 16
10 C 0.10 3.91 5.55 86.31 0.48 4.39 16
11 C -0.02 -1.03 1.41 -52.90 -0.07 -1.11 16
12 C -0.45 -24.81 8.42 25.60 0.22 -24.59 16
13 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16
14 C 0.04 2.34 5.43 84.65 0.46 2.80 16
15 N -0.95 -60.06 13.96 21.45 0.30 -59.76 16
16 Si 0.94 46.77 22.60 68.60 1.55 48.32 16
17 H -0.29 -14.53 7.03 99.48 0.70 -13.83 16
18 H -0.32 -16.47 7.11 99.48 0.71 -15.76 16
19 H -0.23 -10.32 5.25 99.48 0.52 -9.80 16
20 C -0.16 -6.22 9.95 30.59 0.30 -5.91 16
21 C -0.21 -8.40 6.90 30.62 0.21 -8.18 16
22 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16
23 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16
24 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16
25 H 0.07 2.05 8.13 -2.38 -0.02 2.03 16
26 H 0.01 0.43 8.10 -2.39 -0.02 0.41 16
27 H 0.09 4.37 5.35 -2.39 -0.01 4.36 16
28 H 0.01 0.54 8.13 -2.39 -0.02 0.52 16
29 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16
30 H 0.04 1.40 7.75 -2.38 -0.02 1.38 16
31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16
32 H 0.04 1.04 7.05 -2.39 -0.02 1.03 16
33 H 0.39 6.93 9.12 -74.06 -0.68 6.26 16
34 H 0.33 14.56 4.19 -89.69 -0.38 14.18 16
35 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16
36 H 0.03 0.82 6.82 -2.39 -0.02 0.80 16
37 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16
38 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16
39 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16
40 H 0.10 3.35 8.08 -2.38 -0.02 3.33 16
41 H 0.06 2.85 5.97 -2.39 -0.01 2.83 16
Total: -1.00 -67.75 309.81 2.21 -65.53
By element:
Atomic # 1 Polarization: 33.25 SS G_CDS: -0.25 Total: 33.01 kcal
Atomic # 6 Polarization: -45.42 SS G_CDS: 3.54 Total: -41.89 kcal
Atomic # 7 Polarization: -85.95 SS G_CDS: -0.79 Total: -86.74 kcal
Atomic # 8 Polarization: -16.40 SS G_CDS: -1.83 Total: -18.23 kcal
Atomic # 14 Polarization: 46.77 SS G_CDS: 1.55 Total: 48.32 kcal
Total: -67.75 2.21 -65.53 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000083853902.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.981 kcal
(2) G-P(sol) polarization free energy of solvation -67.745 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.764 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.531 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.550 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds