Wall clock time and date at job start Mon Mar 30 2020 03:44:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53008 * 109.46830 * 2 1
4 4 C 1.53000 * 109.47279 * 59.99930 * 3 2 1
5 5 C 1.53001 * 109.47285 * 64.99727 * 4 3 2
6 6 C 1.52996 * 109.46870 * 299.99245 * 3 2 1
7 7 O 1.42896 * 109.47815 * 300.00276 * 6 3 2
8 8 N 1.46904 * 109.46738 * 179.97438 * 3 2 1
9 9 C 1.46900 * 110.99917 * 179.97438 * 8 3 2
10 10 C 1.52997 * 109.47225 * 184.81616 * 9 8 3
11 11 C 1.50700 * 115.55098 * 294.79783 * 10 9 8
12 12 H 1.07994 * 120.00087 * 95.19373 * 11 10 9
13 13 C 1.37873 * 119.99595 * 274.91699 * 11 10 9
14 14 N 1.31517 * 120.00492 * 355.41813 * 13 11 10
15 15 Si 1.86806 * 120.00172 * 175.41658 * 13 11 10
16 16 H 1.48499 * 109.46672 * 0.02562 * 15 13 11
17 17 H 1.48503 * 109.47164 * 119.99754 * 15 13 11
18 18 H 1.48496 * 109.47116 * 239.99999 * 15 13 11
19 19 C 1.53009 * 117.49732 * 80.46462 * 10 9 8
20 20 C 1.53006 * 117.49959 * 149.12248 * 10 9 8
21 21 H 1.08999 * 109.46869 * 60.00032 * 1 2 3
22 22 H 1.08998 * 109.47386 * 180.02562 * 1 2 3
23 23 H 1.09001 * 109.47451 * 300.00222 * 1 2 3
24 24 H 1.08992 * 109.47352 * 239.99677 * 2 1 3
25 25 H 1.09001 * 109.47006 * 119.99021 * 2 1 3
26 26 H 1.08997 * 109.46600 * 184.99873 * 4 3 2
27 27 H 1.09002 * 109.46992 * 304.99534 * 4 3 2
28 28 H 1.08998 * 109.47203 * 300.00148 * 5 4 3
29 29 H 1.09002 * 109.46874 * 60.00347 * 5 4 3
30 30 H 1.08992 * 109.47044 * 179.97438 * 5 4 3
31 31 H 1.09006 * 109.46966 * 60.00997 * 6 3 2
32 32 H 1.09008 * 109.46736 * 180.02562 * 6 3 2
33 33 H 0.96692 * 114.00591 * 180.02562 * 7 6 3
34 34 H 1.00893 * 111.00128 * 303.95557 * 8 3 2
35 35 H 1.09000 * 109.47276 * 64.81807 * 9 8 3
36 36 H 1.09000 * 109.46969 * 304.81861 * 9 8 3
37 37 H 0.96993 * 120.00547 * 185.00148 * 14 13 11
38 38 H 1.08998 * 117.49615 * 215.00720 * 19 10 9
39 39 H 1.08998 * 117.49844 * 0.02562 * 19 10 9
40 40 H 1.08997 * 117.49490 * 359.97438 * 20 10 9
41 41 H 1.08992 * 117.49695 * 144.97569 * 20 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 1.5299 2.1639 1.2492
5 6 2.1399 1.5189 2.4953
6 6 1.5300 2.1637 -1.2493
7 8 2.0064 1.4901 -2.4161
8 7 3.5090 1.4426 0.0006
9 6 4.0354 2.8140 0.0000
10 6 5.5602 2.7750 -0.1204
11 6 6.2883 2.1522 1.0427
12 1 6.5693 1.1100 1.0084
13 6 6.6008 2.9144 2.1483
14 7 6.3447 4.2044 2.1515
15 14 7.3881 2.1150 3.6418
16 1 7.5714 0.6635 3.3873
17 1 8.7090 2.7424 3.9006
18 1 6.5102 2.3036 4.8246
19 6 6.1536 2.5718 -1.5160
20 6 6.2422 3.9414 -0.8382
21 1 -0.3633 0.5138 -0.8900
22 1 -0.3634 -1.0276 0.0005
23 1 -0.3634 0.5139 0.8900
24 1 1.8933 -0.5138 -0.8899
25 1 1.8933 -0.5137 0.8901
26 1 1.8183 3.2141 1.2055
27 1 0.4436 2.0870 1.2951
28 1 1.8516 0.4687 2.5390
29 1 3.2263 1.5959 2.4495
30 1 1.7769 2.0330 3.3852
31 1 0.4400 2.1637 -1.2493
32 1 1.8937 3.1913 -1.2495
33 1 1.7215 1.8937 -3.2472
34 1 3.8702 0.9166 0.7821
35 1 3.7570 3.3105 0.9296
36 1 3.6182 3.3630 -0.8442
37 1 6.6297 4.7537 2.8983
38 1 7.0706 1.9876 -1.5927
39 1 5.4577 2.4663 -2.3483
40 1 5.6046 4.7363 -1.2249
41 1 7.2174 4.2586 -0.4688
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000083854193.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:44:55
Heat of formation + Delta-G solvation = -34.059056 kcal
Electronic energy + Delta-G solvation = -18986.271404 eV
Core-core repulsion = 16287.687667 eV
Total energy + Delta-G solvation = -2698.583737 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.03547 -36.33190 -35.33561 -32.10715 -31.77588 -30.49624 -27.54529 -25.69389
-25.02586 -22.81610 -22.54415 -20.82342 -18.96836 -18.03268 -16.92330 -16.10003
-15.47242 -15.01428 -14.74932 -14.47635 -13.89351 -13.55630 -13.13462 -12.77229
-12.67981 -12.47577 -11.92157 -11.66259 -11.53551 -11.33259 -11.13776 -11.01806
-10.94588 -10.80025 -10.53086 -10.37405 -10.19000 -9.99788 -9.82313 -9.51790
-9.21374 -8.73097 -8.32002 -7.94052 -7.28783 -5.96297 -4.02879 3.28516
3.37761 3.42115 4.43304 4.48803 4.92093 5.12673 5.22446 5.31588
5.45192 5.51867 5.58591 5.65958 5.68889 5.72241 5.83229 5.99296
6.03410 6.15838 6.21715 6.29300 6.33083 6.45267 6.52548 6.61925
6.66642 6.68749 6.77397 6.98384 7.01171 7.06494 7.29204 7.61991
7.71127 7.94091 7.99004 8.17971 8.42799 8.58717 9.01297 9.62301
11.10689
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.023613 B = 0.008593 C = 0.007059
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1185.492842 B = 3257.639490 C = 3965.390633
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.107 4.107
3 C 0.118 3.882
4 C -0.153 4.153
5 C -0.155 4.155
6 C 0.090 3.910
7 O -0.549 6.549
8 N -0.658 5.658
9 C 0.106 3.894
10 C 0.049 3.951
11 C -0.488 4.488
12 H 0.059 0.941
13 C 0.069 3.931
14 N -0.880 5.880
15 Si 0.882 3.118
16 H -0.272 1.272
17 H -0.286 1.286
18 H -0.285 1.285
19 C -0.199 4.199
20 C -0.158 4.158
21 H 0.052 0.948
22 H 0.049 0.951
23 H 0.053 0.947
24 H 0.075 0.925
25 H 0.059 0.941
26 H 0.064 0.936
27 H 0.060 0.940
28 H 0.053 0.947
29 H 0.070 0.930
30 H 0.049 0.951
31 H 0.038 0.962
32 H 0.042 0.958
33 H 0.364 0.636
34 H 0.345 0.655
35 H 0.031 0.969
36 H 0.038 0.962
37 H 0.257 0.743
38 H 0.070 0.930
39 H 0.065 0.935
40 H 0.055 0.945
41 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.332 -3.571 -3.543 12.399
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.145 4.145
3 C 0.026 3.974
4 C -0.192 4.192
5 C -0.213 4.213
6 C 0.011 3.989
7 O -0.351 6.351
8 N -0.290 5.290
9 C -0.023 4.023
10 C 0.048 3.952
11 C -0.526 4.526
12 H 0.077 0.923
13 C -0.133 4.133
14 N -0.517 5.517
15 Si 0.710 3.290
16 H -0.196 1.196
17 H -0.212 1.212
18 H -0.211 1.211
19 C -0.236 4.236
20 C -0.196 4.196
21 H 0.071 0.929
22 H 0.068 0.932
23 H 0.072 0.928
24 H 0.094 0.906
25 H 0.078 0.922
26 H 0.082 0.918
27 H 0.078 0.922
28 H 0.072 0.928
29 H 0.089 0.911
30 H 0.068 0.932
31 H 0.056 0.944
32 H 0.060 0.940
33 H 0.208 0.792
34 H 0.166 0.834
35 H 0.049 0.951
36 H 0.056 0.944
37 H 0.067 0.933
38 H 0.088 0.912
39 H 0.084 0.916
40 H 0.074 0.926
41 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -11.029 -3.885 -3.614 12.239
hybrid contribution 0.044 0.560 1.438 1.544
sum -10.985 -3.325 -2.176 11.681
Atomic orbital electron populations
1.21877 0.96585 1.01034 1.01411 1.21432 0.94571 0.95933 1.02564
1.20902 0.90456 0.94727 0.91328 1.22208 1.00191 1.00781 0.96019
1.21806 1.02650 1.00071 0.96752 1.22250 0.95599 0.95029 0.85987
1.86646 1.77423 1.56129 1.14952 1.60522 1.02733 1.15662 1.50103
1.21473 0.95431 0.87726 0.97682 1.18739 0.89637 0.97231 0.89584
1.20525 1.36729 0.96319 0.99051 0.92257 1.24985 0.95416 0.94851
0.98051 1.70018 1.45997 1.04388 1.31321 0.86690 0.79023 0.79890
0.83375 1.19648 1.21176 1.21122 1.22849 1.02009 1.00778 0.97991
1.22486 1.02173 0.90122 1.04866 0.92856 0.93216 0.92847 0.90613
0.92220 0.91754 0.92190 0.92814 0.91069 0.93185 0.94381 0.93995
0.79159 0.83392 0.95101 0.94362 0.93315 0.91172 0.91630 0.92632
0.90159
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.79 9.22 37.16 0.34 -1.45 16
2 C -0.11 -1.56 4.86 -26.73 -0.13 -1.69 16
3 C 0.12 1.90 0.28 -131.60 -0.04 1.87 16
4 C -0.15 -2.35 4.23 -26.73 -0.11 -2.46 16
5 C -0.16 -2.47 9.18 37.16 0.34 -2.13 16
6 C 0.09 1.34 5.23 37.16 0.19 1.53 16
7 O -0.55 -8.42 12.85 -35.23 -0.45 -8.87 16
8 N -0.66 -13.06 5.74 -99.96 -0.57 -13.63 16
9 C 0.11 2.35 4.60 -3.83 -0.02 2.33 16
10 C 0.05 1.21 1.65 -155.65 -0.26 0.96 16
11 C -0.49 -13.17 8.32 -34.44 -0.29 -13.46 16
12 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16
13 C 0.07 1.88 5.43 -17.82 -0.10 1.79 16
14 N -0.88 -24.75 12.65 55.43 0.70 -24.05 16
15 Si 0.88 21.00 29.54 -169.99 -5.02 15.98 16
16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16
17 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16
18 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16
19 C -0.20 -4.65 9.96 -26.69 -0.27 -4.91 16
20 C -0.16 -3.88 9.14 -26.69 -0.24 -4.13 16
21 H 0.05 0.61 6.43 -51.93 -0.33 0.28 16
22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16
23 H 0.05 0.60 6.32 -51.93 -0.33 0.27 16
24 H 0.08 1.22 7.68 -51.93 -0.40 0.82 16
25 H 0.06 0.86 6.56 -51.93 -0.34 0.52 16
26 H 0.06 1.09 6.79 -51.93 -0.35 0.74 16
27 H 0.06 0.79 6.17 -51.93 -0.32 0.47 16
28 H 0.05 0.76 6.56 -51.93 -0.34 0.42 16
29 H 0.07 1.35 6.40 -51.93 -0.33 1.02 16
30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
31 H 0.04 0.48 6.43 -51.93 -0.33 0.15 16
32 H 0.04 0.67 6.30 -51.92 -0.33 0.34 16
33 H 0.36 3.87 9.12 45.56 0.42 4.28 16
34 H 0.35 7.23 6.50 -39.30 -0.26 6.97 16
35 H 0.03 0.75 6.48 -51.93 -0.34 0.41 16
36 H 0.04 0.83 6.01 -51.93 -0.31 0.52 16
37 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16
38 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16
39 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16
40 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16
41 H 0.08 2.11 8.14 -51.93 -0.42 1.69 16
LS Contribution 312.95 15.07 4.72 4.72
Total: -1.00 -28.95 312.95 -7.18 -36.13
By element:
Atomic # 1 Polarization: 17.46 SS G_CDS: -5.98 Total: 11.48 kcal
Atomic # 6 Polarization: -21.18 SS G_CDS: -0.57 Total: -21.75 kcal
Atomic # 7 Polarization: -37.81 SS G_CDS: 0.13 Total: -37.68 kcal
Atomic # 8 Polarization: -8.42 SS G_CDS: -0.45 Total: -8.87 kcal
Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal
Total LS contribution 4.72 Total: 4.72 kcal
Total: -28.95 -7.18 -36.13 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000083854193.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.067 kcal
(2) G-P(sol) polarization free energy of solvation -28.945 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.878 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.181 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.126 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.059 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds