Wall clock time and date at job start Mon Mar 30 2020 03:44:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53008 * 109.46830 * 2 1
4 4 C 1.53000 * 109.47279 * 59.99930 * 3 2 1
5 5 C 1.53001 * 109.47285 * 64.99727 * 4 3 2
6 6 C 1.52996 * 109.46870 * 299.99245 * 3 2 1
7 7 O 1.42896 * 109.47815 * 300.00276 * 6 3 2
8 8 N 1.46904 * 109.46738 * 179.97438 * 3 2 1
9 9 C 1.46900 * 110.99917 * 179.97438 * 8 3 2
10 10 C 1.52997 * 109.47225 * 184.81616 * 9 8 3
11 11 C 1.50700 * 115.55098 * 294.79783 * 10 9 8
12 12 H 1.07994 * 120.00087 * 95.19373 * 11 10 9
13 13 C 1.37873 * 119.99595 * 274.91699 * 11 10 9
14 14 N 1.31517 * 120.00492 * 355.41813 * 13 11 10
15 15 Si 1.86806 * 120.00172 * 175.41658 * 13 11 10
16 16 H 1.48499 * 109.46672 * 0.02562 * 15 13 11
17 17 H 1.48503 * 109.47164 * 119.99754 * 15 13 11
18 18 H 1.48496 * 109.47116 * 239.99999 * 15 13 11
19 19 C 1.53009 * 117.49732 * 80.46462 * 10 9 8
20 20 C 1.53006 * 117.49959 * 149.12248 * 10 9 8
21 21 H 1.08999 * 109.46869 * 60.00032 * 1 2 3
22 22 H 1.08998 * 109.47386 * 180.02562 * 1 2 3
23 23 H 1.09001 * 109.47451 * 300.00222 * 1 2 3
24 24 H 1.08992 * 109.47352 * 239.99677 * 2 1 3
25 25 H 1.09001 * 109.47006 * 119.99021 * 2 1 3
26 26 H 1.08997 * 109.46600 * 184.99873 * 4 3 2
27 27 H 1.09002 * 109.46992 * 304.99534 * 4 3 2
28 28 H 1.08998 * 109.47203 * 300.00148 * 5 4 3
29 29 H 1.09002 * 109.46874 * 60.00347 * 5 4 3
30 30 H 1.08992 * 109.47044 * 179.97438 * 5 4 3
31 31 H 1.09006 * 109.46966 * 60.00997 * 6 3 2
32 32 H 1.09008 * 109.46736 * 180.02562 * 6 3 2
33 33 H 0.96692 * 114.00591 * 180.02562 * 7 6 3
34 34 H 1.00893 * 111.00128 * 303.95557 * 8 3 2
35 35 H 1.09000 * 109.47276 * 64.81807 * 9 8 3
36 36 H 1.09000 * 109.46969 * 304.81861 * 9 8 3
37 37 H 0.96993 * 120.00547 * 185.00148 * 14 13 11
38 38 H 1.08998 * 117.49615 * 215.00720 * 19 10 9
39 39 H 1.08998 * 117.49844 * 0.02562 * 19 10 9
40 40 H 1.08997 * 117.49490 * 359.97438 * 20 10 9
41 41 H 1.08992 * 117.49695 * 144.97569 * 20 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 1.5299 2.1639 1.2492
5 6 2.1399 1.5189 2.4953
6 6 1.5300 2.1637 -1.2493
7 8 2.0064 1.4901 -2.4161
8 7 3.5090 1.4426 0.0006
9 6 4.0354 2.8140 0.0000
10 6 5.5602 2.7750 -0.1204
11 6 6.2883 2.1522 1.0427
12 1 6.5693 1.1100 1.0084
13 6 6.6008 2.9144 2.1483
14 7 6.3447 4.2044 2.1515
15 14 7.3881 2.1150 3.6418
16 1 7.5714 0.6635 3.3873
17 1 8.7090 2.7424 3.9006
18 1 6.5102 2.3036 4.8246
19 6 6.1536 2.5718 -1.5160
20 6 6.2422 3.9414 -0.8382
21 1 -0.3633 0.5138 -0.8900
22 1 -0.3634 -1.0276 0.0005
23 1 -0.3634 0.5139 0.8900
24 1 1.8933 -0.5138 -0.8899
25 1 1.8933 -0.5137 0.8901
26 1 1.8183 3.2141 1.2055
27 1 0.4436 2.0870 1.2951
28 1 1.8516 0.4687 2.5390
29 1 3.2263 1.5959 2.4495
30 1 1.7769 2.0330 3.3852
31 1 0.4400 2.1637 -1.2493
32 1 1.8937 3.1913 -1.2495
33 1 1.7215 1.8937 -3.2472
34 1 3.8702 0.9166 0.7821
35 1 3.7570 3.3105 0.9296
36 1 3.6182 3.3630 -0.8442
37 1 6.6297 4.7537 2.8983
38 1 7.0706 1.9876 -1.5927
39 1 5.4577 2.4663 -2.3483
40 1 5.6046 4.7363 -1.2249
41 1 7.2174 4.2586 -0.4688
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000083854193.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:44:55
Heat of formation + Delta-G solvation = -53.784093 kcal
Electronic energy + Delta-G solvation = -18987.126746 eV
Core-core repulsion = 16287.687667 eV
Total energy + Delta-G solvation = -2699.439079 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.38071 -38.14702 -36.56503 -33.98066 -33.36213 -31.78284 -28.83212 -27.58348
-26.67103 -24.07167 -23.85948 -22.77672 -20.91157 -19.31127 -18.08464 -17.95671
-16.99101 -16.61399 -16.22736 -16.03992 -15.63849 -14.98228 -14.66453 -14.26388
-13.92808 -13.76304 -13.50651 -13.21079 -12.91356 -12.87411 -12.78762 -12.72510
-12.43931 -12.33524 -12.21897 -11.95546 -11.77763 -11.41182 -11.13777 -11.03206
-10.83336 -10.58191 -10.34180 -9.86945 -8.89876 -8.05440 -6.17094 1.37856
1.41836 1.52038 2.43481 3.21496 3.24467 3.52983 3.78245 3.96634
4.05590 4.26947 4.33113 4.39936 4.47661 4.56457 4.62840 4.67986
4.72406 4.76474 4.79845 4.88176 4.94240 5.05955 5.08059 5.10649
5.14216 5.27380 5.28512 5.33442 5.37741 5.47151 5.64200 5.69874
5.73818 5.85531 6.49702 6.58094 6.76263 6.92699 7.09004 7.50425
9.01134
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.023613 B = 0.008593 C = 0.007059
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1185.492842 B = 3257.639490 C = 3965.390633
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.101 4.101
3 C 0.111 3.889
4 C -0.146 4.146
5 C -0.152 4.152
6 C 0.092 3.908
7 O -0.569 6.569
8 N -0.663 5.663
9 C 0.127 3.873
10 C 0.028 3.972
11 C -0.498 4.498
12 H 0.048 0.952
13 C 0.028 3.972
14 N -0.906 5.906
15 Si 0.941 3.059
16 H -0.268 1.268
17 H -0.285 1.285
18 H -0.281 1.281
19 C -0.180 4.180
20 C -0.162 4.162
21 H 0.059 0.941
22 H 0.063 0.937
23 H 0.062 0.938
24 H 0.058 0.942
25 H 0.056 0.944
26 H 0.043 0.957
27 H 0.090 0.910
28 H 0.071 0.929
29 H 0.033 0.967
30 H 0.057 0.943
31 H 0.069 0.931
32 H 0.028 0.972
33 H 0.384 0.616
34 H 0.336 0.664
35 H 0.004 0.996
36 H 0.043 0.957
37 H 0.257 0.743
38 H 0.066 0.934
39 H 0.081 0.919
40 H 0.066 0.934
41 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.017 -4.467 -3.657 14.240
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.139 4.139
3 C 0.020 3.980
4 C -0.185 4.185
5 C -0.209 4.209
6 C 0.014 3.986
7 O -0.375 6.375
8 N -0.293 5.293
9 C -0.002 4.002
10 C 0.027 3.973
11 C -0.536 4.536
12 H 0.066 0.934
13 C -0.172 4.172
14 N -0.544 5.544
15 Si 0.768 3.232
16 H -0.192 1.192
17 H -0.211 1.211
18 H -0.207 1.207
19 C -0.218 4.218
20 C -0.200 4.200
21 H 0.078 0.922
22 H 0.082 0.918
23 H 0.081 0.919
24 H 0.077 0.923
25 H 0.075 0.925
26 H 0.062 0.938
27 H 0.108 0.892
28 H 0.089 0.911
29 H 0.052 0.948
30 H 0.076 0.924
31 H 0.087 0.913
32 H 0.046 0.954
33 H 0.232 0.768
34 H 0.155 0.845
35 H 0.022 0.978
36 H 0.061 0.939
37 H 0.066 0.934
38 H 0.085 0.915
39 H 0.099 0.901
40 H 0.084 0.916
41 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -12.727 -4.785 -3.753 14.105
hybrid contribution 0.561 0.815 1.419 1.730
sum -12.166 -3.970 -2.334 13.008
Atomic orbital electron populations
1.21833 0.93994 1.02290 1.02150 1.21371 0.96706 0.94265 1.01594
1.21117 0.88085 0.96340 0.92494 1.22145 1.01872 0.99223 0.95302
1.21756 1.00178 1.01452 0.97502 1.22224 0.97212 0.93795 0.85405
1.86588 1.78024 1.56738 1.16105 1.60519 1.05454 1.13800 1.49569
1.21113 0.93709 0.89011 0.96388 1.18950 0.91165 0.97410 0.89772
1.20681 1.36926 0.95874 1.00151 0.93360 1.25588 0.96029 0.95252
1.00317 1.70117 1.46914 1.05404 1.32015 0.85764 0.78054 0.79112
0.80297 1.19240 1.21081 1.20728 1.22792 1.01865 0.99467 0.97651
1.22380 1.01231 0.90871 1.05550 0.92188 0.91835 0.91910 0.92288
0.92524 0.93811 0.89193 0.91050 0.94783 0.92378 0.91323 0.95394
0.76816 0.84472 0.97775 0.93916 0.93382 0.91496 0.90072 0.91553
0.92512
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.92 9.22 71.98 0.66 -2.25 16
2 C -0.10 -2.75 4.86 30.60 0.15 -2.60 16
3 C 0.11 3.43 0.28 3.53 0.00 3.43 16
4 C -0.15 -4.29 4.23 30.59 0.13 -4.16 16
5 C -0.15 -4.68 9.18 71.98 0.66 -4.02 16
6 C 0.09 2.55 5.23 71.98 0.38 2.92 16
7 O -0.57 -16.27 12.85 -148.98 -1.91 -18.18 16
8 N -0.66 -26.21 5.74 -470.17 -2.70 -28.91 16
9 C 0.13 5.71 4.60 86.30 0.40 6.11 16
10 C 0.03 1.39 1.65 -52.92 -0.09 1.31 16
11 C -0.50 -27.32 8.32 25.60 0.21 -27.11 16
12 H 0.05 2.69 7.82 -2.91 -0.02 2.67 16
13 C 0.03 1.54 5.43 84.65 0.46 2.00 16
14 N -0.91 -51.84 12.65 21.45 0.27 -51.56 16
15 Si 0.94 43.61 29.54 68.60 2.03 45.64 16
16 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16
17 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16
18 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16
19 C -0.18 -8.37 9.96 30.62 0.30 -8.07 16
20 C -0.16 -8.03 9.14 30.62 0.28 -7.75 16
21 H 0.06 1.14 6.43 -2.39 -0.02 1.12 16
22 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16
23 H 0.06 1.15 6.32 -2.39 -0.02 1.14 16
24 H 0.06 1.80 7.68 -2.39 -0.02 1.78 16
25 H 0.06 1.54 6.56 -2.39 -0.02 1.53 16
26 H 0.04 1.46 6.79 -2.39 -0.02 1.45 16
27 H 0.09 2.10 6.17 -2.39 -0.01 2.08 16
28 H 0.07 1.91 6.56 -2.39 -0.02 1.90 16
29 H 0.03 1.30 6.40 -2.39 -0.02 1.28 16
30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16
31 H 0.07 1.50 6.43 -2.38 -0.02 1.48 16
32 H 0.03 0.85 6.30 -2.38 -0.02 0.84 16
33 H 0.38 7.25 9.12 -74.06 -0.68 6.58 16
34 H 0.34 14.26 6.50 -89.70 -0.58 13.68 16
35 H 0.00 0.21 6.48 -2.39 -0.02 0.19 16
36 H 0.04 1.86 6.01 -2.39 -0.01 1.84 16
37 H 0.26 14.10 8.32 -92.71 -0.77 13.33 16
38 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16
39 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16
40 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16
41 H 0.06 3.05 8.14 -2.39 -0.02 3.03 16
Total: -1.00 -61.80 312.95 1.00 -60.80
By element:
Atomic # 1 Polarization: 32.65 SS G_CDS: -0.23 Total: 32.41 kcal
Atomic # 6 Polarization: -43.74 SS G_CDS: 3.55 Total: -40.19 kcal
Atomic # 7 Polarization: -78.05 SS G_CDS: -2.43 Total: -80.48 kcal
Atomic # 8 Polarization: -16.27 SS G_CDS: -1.91 Total: -18.18 kcal
Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal
Total: -61.80 1.00 -60.80 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000083854193.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.017 kcal
(2) G-P(sol) polarization free energy of solvation -61.798 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.781 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.996 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.802 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.784 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds