Wall clock time and date at job start Mon Mar 30 2020 03:41:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52998 * 109.46925 * 2 1
4 4 O 1.42905 * 109.46895 * 176.13098 * 3 2 1
5 5 C 1.53001 * 109.47358 * 56.13199 * 3 2 1
6 6 C 1.53004 * 109.46802 * 60.49177 * 5 3 2
7 7 C 1.52994 * 109.47139 * 296.13149 * 3 2 1
8 8 N 1.46894 * 109.47155 * 293.87732 * 7 3 2
9 9 C 1.46903 * 111.00255 * 203.06637 * 8 7 3
10 10 C 1.50702 * 109.47205 * 153.51776 * 9 8 7
11 11 H 1.08001 * 120.00007 * 356.94522 * 10 9 8
12 12 C 1.37880 * 120.00022 * 176.93696 * 10 9 8
13 13 N 1.31513 * 120.00087 * 0.02562 * 12 10 9
14 14 Si 1.86800 * 120.00121 * 180.02562 * 12 10 9
15 15 H 1.48504 * 109.46724 * 90.00189 * 14 12 10
16 16 H 1.48494 * 109.47196 * 210.00597 * 14 12 10
17 17 H 1.48501 * 109.47061 * 330.00801 * 14 12 10
18 18 C 1.46906 * 111.00246 * 79.11949 * 8 7 3
19 19 C 1.52995 * 117.49847 * 235.95018 * 18 8 7
20 20 C 1.52994 * 117.50211 * 167.28609 * 18 8 7
21 21 H 1.09001 * 109.47070 * 60.28830 * 1 2 3
22 22 H 1.08998 * 109.47038 * 180.28483 * 1 2 3
23 23 H 1.08994 * 109.47094 * 300.28745 * 1 2 3
24 24 H 1.08997 * 109.46828 * 239.99846 * 2 1 3
25 25 H 1.09004 * 109.46747 * 120.00142 * 2 1 3
26 26 H 0.96696 * 113.99665 * 180.02562 * 4 3 2
27 27 H 1.08994 * 109.47197 * 180.49275 * 5 3 2
28 28 H 1.08997 * 109.47123 * 300.49952 * 5 3 2
29 29 H 1.08998 * 109.46996 * 64.22428 * 6 5 3
30 30 H 1.09000 * 109.47217 * 184.21815 * 6 5 3
31 31 H 1.08997 * 109.47558 * 304.22105 * 6 5 3
32 32 H 1.09003 * 109.47210 * 53.88082 * 7 3 2
33 33 H 1.09000 * 109.47312 * 173.87768 * 7 3 2
34 34 H 1.08991 * 109.47892 * 273.52550 * 9 8 7
35 35 H 1.09004 * 109.46754 * 33.52587 * 9 8 7
36 36 H 0.96999 * 120.00056 * 179.97438 * 13 12 10
37 37 H 1.09007 * 115.54409 * 21.60998 * 18 8 7
38 38 H 1.09004 * 117.50263 * 359.97438 * 19 18 8
39 39 H 1.09003 * 117.50248 * 145.01713 * 19 18 8
40 40 H 1.08999 * 117.50003 * 214.97368 * 20 18 8
41 41 H 1.08996 * 117.49800 * 359.97438 * 20 18 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 8 3.4662 1.4435 0.0909
5 6 1.4521 2.1913 1.1977
6 6 1.8912 1.5059 2.4932
7 6 1.6110 2.1351 -1.2950
8 7 2.2919 1.5069 -2.4350
9 6 2.3604 2.4260 -3.5790
10 6 3.5480 2.0727 -4.4368
11 1 4.2161 1.2799 -4.1341
12 6 3.7816 2.7614 -5.6082
13 7 2.9683 3.7270 -5.9767
14 14 5.2532 2.3230 -6.6719
15 1 4.8609 1.2807 -7.6543
16 1 5.7200 3.5335 -7.3942
17 1 6.3486 1.8061 -5.8127
18 6 1.6365 0.2470 -2.8107
19 6 2.4987 -1.0166 -2.8398
20 6 2.0273 -0.3808 -4.1500
21 1 -0.3633 0.5094 -0.8926
22 1 -0.3633 -1.0276 0.0051
23 1 -0.3633 0.5183 0.8873
24 1 1.8933 -0.5138 -0.8900
25 1 1.8933 -0.5139 0.8900
26 1 3.8592 2.3270 0.0965
27 1 1.8085 3.2214 1.1928
28 1 0.3641 2.1829 1.1331
29 1 2.9739 1.5802 2.5946
30 1 1.4125 1.9933 3.3425
31 1 1.6002 0.4559 2.4655
32 1 0.5322 2.0391 -1.4182
33 1 1.8789 3.1906 -1.2485
34 1 1.4479 2.3407 -4.1688
35 1 2.4650 3.4489 -3.2173
36 1 3.1328 4.2117 -6.8006
37 1 0.6003 0.1420 -2.4888
38 1 3.5523 -0.9130 -2.5806
39 1 2.0297 -1.9530 -2.5376
40 1 1.2485 -0.8992 -4.7092
41 1 2.7705 0.1413 -4.7527
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000167814454.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:41:29
Heat of formation + Delta-G solvation = -41.477570 kcal
Electronic energy + Delta-G solvation = -18965.606468 eV
Core-core repulsion = 16266.701040 eV
Total energy + Delta-G solvation = -2698.905428 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.60774 -38.31328 -35.22312 -34.73554 -34.06485 -31.95432 -29.73002 -27.61585
-25.03831 -24.47491 -23.68843 -22.92911 -21.02577 -20.06188 -18.66614 -17.36737
-16.80724 -16.63258 -16.28181 -16.22787 -15.81336 -14.92397 -14.62771 -14.33823
-13.88147 -13.40107 -13.36629 -13.08237 -12.95906 -12.83924 -12.74019 -12.67839
-12.60769 -12.39540 -12.23056 -11.93466 -11.82088 -11.50025 -11.44157 -11.04986
-10.89252 -10.82381 -10.50845 -10.34852 -8.75905 -8.14475 -6.20494 1.41050
1.41573 1.53162 2.41447 3.02149 3.14117 3.26048 3.64240 3.87104
4.04049 4.10503 4.20777 4.28433 4.36284 4.52444 4.55349 4.62994
4.69719 4.79569 4.81391 4.84248 4.93587 4.94518 5.03586 5.11538
5.17357 5.24818 5.28541 5.36629 5.41764 5.42478 5.51766 5.67237
5.72004 5.72791 6.13750 6.48994 6.71509 6.91554 7.09113 7.44545
8.94375
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.031187 B = 0.006929 C = 0.006440
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 897.607710 B = 4040.186676 C = 4346.766115
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.131 4.131
3 C 0.150 3.850
4 O -0.560 6.560
5 C -0.148 4.148
6 C -0.140 4.140
7 C 0.028 3.972
8 N -0.501 5.501
9 C 0.211 3.789
10 C -0.494 4.494
11 H 0.058 0.942
12 C 0.002 3.998
13 N -0.935 5.935
14 Si 0.958 3.042
15 H -0.273 1.273
16 H -0.284 1.284
17 H -0.268 1.268
18 C 0.019 3.981
19 C -0.151 4.151
20 C -0.207 4.207
21 H 0.045 0.955
22 H 0.068 0.932
23 H 0.068 0.932
24 H 0.084 0.916
25 H 0.066 0.934
26 H 0.375 0.625
27 H 0.062 0.938
28 H 0.080 0.920
29 H 0.050 0.950
30 H 0.063 0.937
31 H 0.057 0.943
32 H 0.041 0.959
33 H 0.055 0.945
34 H -0.032 1.032
35 H -0.005 1.005
36 H 0.262 0.738
37 H 0.096 0.904
38 H 0.077 0.923
39 H 0.111 0.889
40 H 0.092 0.908
41 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.897 -6.421 13.274 15.537
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.168 4.168
3 C 0.109 3.891
4 O -0.365 6.365
5 C -0.186 4.186
6 C -0.197 4.197
7 C -0.101 4.101
8 N -0.224 5.224
9 C 0.085 3.915
10 C -0.533 4.533
11 H 0.076 0.924
12 C -0.195 4.195
13 N -0.576 5.576
14 Si 0.784 3.216
15 H -0.199 1.199
16 H -0.210 1.210
17 H -0.193 1.193
18 C -0.090 4.090
19 C -0.189 4.189
20 C -0.244 4.244
21 H 0.064 0.936
22 H 0.087 0.913
23 H 0.087 0.913
24 H 0.102 0.898
25 H 0.085 0.915
26 H 0.222 0.778
27 H 0.081 0.919
28 H 0.098 0.902
29 H 0.069 0.931
30 H 0.082 0.918
31 H 0.076 0.924
32 H 0.059 0.941
33 H 0.073 0.927
34 H -0.014 1.014
35 H 0.013 0.987
36 H 0.071 0.929
37 H 0.113 0.887
38 H 0.096 0.904
39 H 0.129 0.871
40 H 0.110 0.890
41 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges -4.535 -7.032 13.295 15.709
hybrid contribution -0.072 1.199 -1.261 1.742
sum -4.607 -5.834 12.034 14.144
Atomic orbital electron populations
1.21901 0.94334 1.02474 1.01819 1.21806 0.96262 0.94929 1.03837
1.21125 0.80887 0.96099 0.91011 1.86480 1.19770 1.33800 1.96449
1.22212 1.01820 0.99383 0.95207 1.21657 1.01320 1.00723 0.96039
1.22979 0.96569 0.97714 0.92828 1.61700 1.50591 1.03827 1.06318
1.19442 0.94626 0.89930 0.87493 1.21307 1.09954 1.17058 1.04933
0.92379 1.25789 0.99369 0.95137 0.99234 1.70073 1.39283 1.23835
1.24448 0.85540 0.79695 0.77634 0.78739 1.19902 1.20964 1.19301
1.22444 0.95392 0.90290 1.00850 1.22961 0.99862 0.95812 1.00258
1.23594 1.04779 1.04112 0.91928 0.93627 0.91332 0.91271 0.89765
0.91535 0.77767 0.91936 0.90194 0.93118 0.91802 0.92373 0.94101
0.92677 1.01435 0.98661 0.92920 0.88710 0.90413 0.87105 0.89012
0.88029
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.25 8.73 71.98 0.63 -2.62 16
2 C -0.13 -3.53 4.39 30.60 0.13 -3.39 16
3 C 0.15 4.33 0.62 -10.80 -0.01 4.33 16
4 O -0.56 -18.30 12.10 -148.98 -1.80 -20.10 16
5 C -0.15 -3.35 4.73 30.60 0.14 -3.21 16
6 C -0.14 -2.80 9.47 71.98 0.68 -2.12 16
7 C 0.03 0.98 4.26 86.30 0.37 1.35 16
8 N -0.50 -21.44 4.22 -875.54 -3.69 -25.13 16
9 C 0.21 11.17 4.52 85.56 0.39 11.56 16
10 C -0.49 -27.75 6.61 25.60 0.17 -27.58 16
11 H 0.06 3.30 7.32 -2.91 -0.02 3.28 16
12 C 0.00 0.12 5.46 84.66 0.46 0.59 16
13 N -0.94 -56.23 13.29 21.45 0.28 -55.94 16
14 Si 0.96 44.79 29.54 68.60 2.03 46.82 16
15 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16
16 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16
17 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16
18 C 0.02 0.73 3.33 44.91 0.15 0.88 16
19 C -0.15 -5.24 8.48 30.62 0.26 -4.98 16
20 C -0.21 -8.29 9.51 30.62 0.29 -8.00 16
21 H 0.04 1.10 4.97 -2.39 -0.01 1.09 16
22 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16
23 H 0.07 1.30 6.33 -2.39 -0.02 1.28 16
24 H 0.08 2.58 3.50 -2.39 -0.01 2.57 16
25 H 0.07 1.70 6.56 -2.38 -0.02 1.68 16
26 H 0.38 10.83 9.04 -74.06 -0.67 10.16 16
27 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16
28 H 0.08 1.64 6.32 -2.39 -0.02 1.63 16
29 H 0.05 1.10 7.80 -2.39 -0.02 1.08 16
30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16
31 H 0.06 1.15 6.31 -2.39 -0.02 1.13 16
32 H 0.04 1.38 5.90 -2.39 -0.01 1.36 16
33 H 0.05 2.03 7.45 -2.39 -0.02 2.01 16
34 H -0.03 -1.87 7.84 -2.39 -0.02 -1.89 16
35 H 0.00 -0.27 7.42 -2.38 -0.02 -0.28 16
36 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16
37 H 0.10 3.27 5.57 -2.38 -0.01 3.25 16
38 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16
39 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16
40 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16
41 H 0.10 4.91 4.80 -2.39 -0.01 4.90 16
Total: -1.00 -63.60 304.88 0.84 -62.76
By element:
Atomic # 1 Polarization: 24.45 SS G_CDS: 0.35 Total: 24.80 kcal
Atomic # 6 Polarization: -36.87 SS G_CDS: 3.67 Total: -33.21 kcal
Atomic # 7 Polarization: -77.67 SS G_CDS: -3.41 Total: -81.07 kcal
Atomic # 8 Polarization: -18.30 SS G_CDS: -1.80 Total: -20.10 kcal
Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal
Total: -63.60 0.84 -62.76 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000167814454.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.287 kcal
(2) G-P(sol) polarization free energy of solvation -63.600 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.313 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.835 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.765 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.478 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds