Wall clock time and date at job start Mon Mar 30 2020 04:27:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 C 1.52997 * 109.47800 * 2 1
4 4 C 1.53004 * 109.46928 * 305.00203 * 3 2 1
5 5 O 1.42902 * 109.46787 * 64.99512 * 3 2 1
6 6 C 1.53000 * 109.47619 * 184.99815 * 3 2 1
7 7 N 1.46496 * 109.47067 * 180.97921 * 6 3 2
8 8 C 1.36934 * 120.00233 * 263.75725 * 7 6 3
9 9 H 1.08006 * 120.00280 * 142.26906 * 8 7 6
10 10 C 1.38813 * 120.00092 * 322.26736 * 8 7 6
11 11 N 1.31616 * 119.99528 * 340.01264 * 10 8 7
12 12 Si 1.86797 * 120.00207 * 160.01266 * 10 8 7
13 13 H 1.48502 * 109.46983 * 89.99789 * 12 10 8
14 14 H 1.48500 * 109.47353 * 210.00124 * 12 10 8
15 15 H 1.48501 * 109.47290 * 330.00402 * 12 10 8
16 16 C 1.46505 * 119.99712 * 83.75720 * 7 6 3
17 17 C 1.54270 * 110.02987 * 237.90532 * 16 7 6
18 18 C 1.54967 * 104.15913 * 217.13668 * 17 16 7
19 19 C 1.54890 * 102.77793 * 37.89117 * 18 17 16
20 20 C 1.53871 * 110.03175 * 120.69314 * 16 7 6
21 21 H 1.09003 * 109.47334 * 59.99871 * 1 2 3
22 22 H 1.09002 * 109.47389 * 179.97438 * 1 2 3
23 23 H 1.08996 * 109.47369 * 300.00144 * 1 2 3
24 24 H 1.09005 * 109.47368 * 240.00053 * 2 1 3
25 25 H 1.09003 * 109.47334 * 120.00129 * 2 1 3
26 26 H 1.09002 * 109.46846 * 179.97438 * 4 3 2
27 27 H 1.09002 * 109.46847 * 299.99460 * 4 3 2
28 28 H 1.09002 * 109.47328 * 59.99455 * 4 3 2
29 29 H 0.96705 * 114.00176 * 55.18297 * 5 3 2
30 30 H 1.08992 * 109.46750 * 300.97986 * 6 3 2
31 31 H 1.09002 * 109.46776 * 60.98349 * 6 3 2
32 32 H 0.97008 * 119.99649 * 179.97438 * 11 10 8
33 33 H 1.08993 * 110.01759 * 359.29517 * 16 7 6
34 34 H 1.08999 * 110.48815 * 335.78324 * 17 16 7
35 35 H 1.09001 * 110.48383 * 98.42811 * 17 16 7
36 36 H 1.08998 * 110.72039 * 279.57907 * 18 17 16
37 37 H 1.09000 * 110.92716 * 156.29730 * 18 17 16
38 38 H 1.08999 * 110.48793 * 203.40948 * 19 18 17
39 39 H 1.08990 * 110.60063 * 80.81396 * 19 18 17
40 40 H 1.09004 * 110.03134 * 238.56776 * 20 16 7
41 41 H 1.08998 * 110.03406 * 359.94685 * 20 16 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 1.4300 2.1991 -1.1816
5 8 1.6620 2.0813 1.2210
6 6 3.5649 1.4442 -0.1257
7 7 4.0552 2.8245 -0.1022
8 6 4.3086 3.4812 -1.2767
9 1 4.0762 4.5319 -1.3690
10 6 4.8643 2.7966 -2.3488
11 7 5.5034 1.6639 -2.1462
12 14 4.7052 3.4827 -4.0789
13 1 5.8601 4.3704 -4.3675
14 1 4.6845 2.3639 -5.0552
15 1 3.4443 4.2594 -4.1893
16 6 4.2744 3.5022 1.1781
17 6 3.4277 4.7900 1.2460
18 6 4.3348 5.8011 1.9919
19 6 5.7430 5.4720 1.4373
20 6 5.7458 3.9354 1.3000
21 1 -0.3634 0.5139 -0.8900
22 1 -0.3634 -1.0277 -0.0005
23 1 -0.3634 0.5138 0.8899
24 1 1.8933 -0.5138 -0.8900
25 1 1.8933 -0.5139 0.8900
26 1 1.7931 3.2269 -1.1814
27 1 1.7184 1.7117 -2.1130
28 1 0.3437 2.1978 -1.0921
29 1 1.9520 1.6134 2.0161
30 1 3.9986 0.8903 0.7068
31 1 3.8525 0.9724 -1.0653
32 1 5.8915 1.1853 -2.8954
33 1 4.0110 2.8384 2.0015
34 1 3.1999 5.1501 0.2427
35 1 2.5098 4.6139 1.8068
36 1 4.2947 5.6341 3.0682
37 1 4.0548 6.8267 1.7510
38 1 6.5137 5.7937 2.1377
39 1 5.8919 5.9420 0.4653
40 1 6.1964 3.4825 2.1832
41 1 6.2971 3.6406 0.4071
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000167822178.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:27:42
Heat of formation + Delta-G solvation = -51.280529 kcal
Electronic energy + Delta-G solvation = -19354.688475 eV
Core-core repulsion = 16655.357958 eV
Total energy + Delta-G solvation = -2699.330516 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-38.34182 -36.94261 -33.88718 -32.49364 -30.89812 -28.75834 -27.68941 -26.50739
-26.06005 -23.59155 -21.54345 -19.85824 -19.30330 -18.88358 -16.42814 -15.37681
-15.13403 -14.83222 -14.50208 -14.22082 -14.04705 -13.17967 -13.06082 -12.63027
-12.42882 -11.78415 -11.70334 -11.36905 -11.25152 -10.95110 -10.84692 -10.74762
-10.69036 -10.44800 -10.30938 -10.25854 -10.17751 -10.04971 -9.79090 -9.65342
-9.60115 -9.44731 -8.87132 -8.38798 -6.39390 -5.71809 -3.26472 3.36788
3.45235 3.48463 4.51984 5.02410 5.32089 5.41036 5.50170 5.54572
5.58764 5.65404 5.73301 5.88131 6.04488 6.22381 6.27050 6.28490
6.31874 6.37316 6.45551 6.51250 6.57212 6.59421 6.71113 6.73217
6.77195 6.81580 6.93929 7.04670 7.06821 7.15773 7.31172 7.40250
7.47647 7.64085 7.90860 8.49540 8.61369 9.29096 9.92800 10.51995
11.28022
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.015404 B = 0.012862 C = 0.008229
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1817.241320 B = 2176.510626 C = 3401.683982
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.149 4.149
3 C 0.108 3.892
4 C -0.118 4.118
5 O -0.556 6.556
6 C 0.131 3.869
7 N -0.568 5.568
8 C -0.237 4.237
9 H 0.059 0.941
10 C 0.010 3.990
11 N -0.892 5.892
12 Si 0.886 3.114
13 H -0.288 1.288
14 H -0.291 1.291
15 H -0.278 1.278
16 C 0.184 3.816
17 C -0.126 4.126
18 C -0.125 4.125
19 C -0.117 4.117
20 C -0.136 4.136
21 H 0.055 0.945
22 H 0.040 0.960
23 H 0.054 0.946
24 H 0.065 0.935
25 H 0.053 0.947
26 H 0.077 0.923
27 H 0.055 0.945
28 H 0.035 0.965
29 H 0.356 0.644
30 H 0.018 0.982
31 H 0.099 0.901
32 H 0.252 0.748
33 H 0.044 0.956
34 H 0.069 0.931
35 H 0.052 0.948
36 H 0.052 0.948
37 H 0.049 0.951
38 H 0.044 0.956
39 H 0.060 0.940
40 H 0.036 0.964
41 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.128 -0.097 5.931 7.841
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.187 4.187
3 C 0.065 3.935
4 C -0.176 4.176
5 O -0.359 6.359
6 C 0.004 3.996
7 N -0.286 5.286
8 C -0.367 4.367
9 H 0.076 0.924
10 C -0.189 4.189
11 N -0.535 5.535
12 Si 0.716 3.284
13 H -0.215 1.215
14 H -0.217 1.217
15 H -0.203 1.203
16 C 0.076 3.924
17 C -0.165 4.165
18 C -0.163 4.163
19 C -0.155 4.155
20 C -0.175 4.175
21 H 0.074 0.926
22 H 0.059 0.941
23 H 0.073 0.927
24 H 0.084 0.916
25 H 0.072 0.928
26 H 0.096 0.904
27 H 0.074 0.926
28 H 0.054 0.946
29 H 0.201 0.799
30 H 0.036 0.964
31 H 0.117 0.883
32 H 0.062 0.938
33 H 0.062 0.938
34 H 0.088 0.912
35 H 0.071 0.929
36 H 0.071 0.929
37 H 0.068 0.932
38 H 0.063 0.937
39 H 0.079 0.921
40 H 0.055 0.945
41 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -5.290 0.212 5.368 7.539
hybrid contribution 0.297 -0.223 -0.620 0.723
sum -4.992 -0.011 4.748 6.890
Atomic orbital electron populations
1.21738 0.96323 1.00109 1.02116 1.22194 0.95956 0.98850 1.01725
1.22143 0.97651 0.89038 0.84638 1.21545 0.97771 1.02772 0.95469
1.86539 1.80943 1.53569 1.14894 1.21487 0.88499 0.87372 1.02236
1.43679 1.73505 1.10929 1.00503 1.18843 1.33916 0.94718 0.89252
0.92385 1.25109 0.97040 0.97957 0.98837 1.69996 1.35909 1.17710
1.29918 0.86559 0.78176 0.78211 0.85475 1.21457 1.21689 1.20331
1.20889 0.91070 0.92173 0.88250 1.22725 0.97422 0.96303 1.00066
1.22471 0.96500 0.98514 0.98824 1.22241 0.95835 0.97618 0.99772
1.22650 1.00022 0.93884 1.00982 0.92592 0.94053 0.92697 0.91612
0.92789 0.90367 0.92616 0.94586 0.79948 0.96383 0.88309 0.93805
0.93798 0.91209 0.92910 0.92928 0.93194 0.93737 0.92134 0.94496
0.89951
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.08 9.32 37.15 0.35 -1.74 16
2 C -0.15 -2.39 5.16 -26.74 -0.14 -2.53 16
3 C 0.11 2.02 0.86 -90.62 -0.08 1.95 16
4 C -0.12 -2.36 7.87 37.16 0.29 -2.07 16
5 O -0.56 -9.98 11.24 -35.23 -0.40 -10.38 16
6 C 0.13 2.90 4.42 -4.04 -0.02 2.89 16
7 N -0.57 -13.17 2.01 -164.40 -0.33 -13.50 16
8 C -0.24 -6.07 6.35 -15.06 -0.10 -6.16 16
9 H 0.06 1.54 6.65 -52.48 -0.35 1.19 16
10 C 0.01 0.26 4.93 -17.43 -0.09 0.17 16
11 N -0.89 -24.69 11.49 55.49 0.64 -24.05 16
12 Si 0.89 21.15 29.60 -169.99 -5.03 16.12 16
13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
16 C 0.18 3.80 2.59 -66.81 -0.17 3.63 16
17 C -0.13 -2.42 6.42 -25.03 -0.16 -2.58 16
18 C -0.13 -2.10 6.91 -24.70 -0.17 -2.27 16
19 C -0.12 -2.09 6.83 -25.07 -0.17 -2.26 16
20 C -0.14 -2.77 6.27 -25.61 -0.16 -2.94 16
21 H 0.06 0.82 6.35 -51.93 -0.33 0.49 16
22 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16
23 H 0.05 0.78 7.82 -51.93 -0.41 0.38 16
24 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16
25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16
26 H 0.08 1.76 6.62 -51.93 -0.34 1.42 16
27 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16
28 H 0.04 0.65 6.35 -51.93 -0.33 0.32 16
29 H 0.36 5.34 9.02 45.56 0.41 5.75 16
30 H 0.02 0.39 8.07 -51.93 -0.42 -0.03 16
31 H 0.10 2.50 5.57 -51.93 -0.29 2.21 16
32 H 0.25 6.83 8.31 -40.82 -0.34 6.50 16
33 H 0.04 0.88 7.56 -51.93 -0.39 0.48 16
34 H 0.07 1.50 6.33 -51.93 -0.33 1.17 16
35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16
36 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16
37 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16
38 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16
39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16
40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16
41 H 0.08 1.99 7.34 -51.93 -0.38 1.61 16
LS Contribution 311.00 15.07 4.69 4.69
Total: -1.00 -26.88 311.00 -7.57 -34.45
By element:
Atomic # 1 Polarization: 13.12 SS G_CDS: -6.52 Total: 6.60 kcal
Atomic # 6 Polarization: -13.30 SS G_CDS: -0.61 Total: -13.91 kcal
Atomic # 7 Polarization: -37.86 SS G_CDS: 0.31 Total: -37.56 kcal
Atomic # 8 Polarization: -9.98 SS G_CDS: -0.40 Total: -10.38 kcal
Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal
Total LS contribution 4.69 Total: 4.69 kcal
Total: -26.88 -7.57 -34.45 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000167822178.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -16.835 kcal
(2) G-P(sol) polarization free energy of solvation -26.879 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.714 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.446 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.281 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds