Wall clock time and date at job start Mon Mar 30 2020 04:27:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 C 1.52997 * 109.47800 * 2 1
4 4 C 1.53004 * 109.46928 * 305.00203 * 3 2 1
5 5 O 1.42902 * 109.46787 * 64.99512 * 3 2 1
6 6 C 1.53000 * 109.47619 * 184.99815 * 3 2 1
7 7 N 1.46496 * 109.47067 * 180.97921 * 6 3 2
8 8 C 1.36934 * 120.00233 * 263.75725 * 7 6 3
9 9 H 1.08006 * 120.00280 * 142.26906 * 8 7 6
10 10 C 1.38813 * 120.00092 * 322.26736 * 8 7 6
11 11 N 1.31616 * 119.99528 * 340.01264 * 10 8 7
12 12 Si 1.86797 * 120.00207 * 160.01266 * 10 8 7
13 13 H 1.48502 * 109.46983 * 89.99789 * 12 10 8
14 14 H 1.48500 * 109.47353 * 210.00124 * 12 10 8
15 15 H 1.48501 * 109.47290 * 330.00402 * 12 10 8
16 16 C 1.46505 * 119.99712 * 83.75720 * 7 6 3
17 17 C 1.54270 * 110.02987 * 237.90532 * 16 7 6
18 18 C 1.54967 * 104.15913 * 217.13668 * 17 16 7
19 19 C 1.54890 * 102.77793 * 37.89117 * 18 17 16
20 20 C 1.53871 * 110.03175 * 120.69314 * 16 7 6
21 21 H 1.09003 * 109.47334 * 59.99871 * 1 2 3
22 22 H 1.09002 * 109.47389 * 179.97438 * 1 2 3
23 23 H 1.08996 * 109.47369 * 300.00144 * 1 2 3
24 24 H 1.09005 * 109.47368 * 240.00053 * 2 1 3
25 25 H 1.09003 * 109.47334 * 120.00129 * 2 1 3
26 26 H 1.09002 * 109.46846 * 179.97438 * 4 3 2
27 27 H 1.09002 * 109.46847 * 299.99460 * 4 3 2
28 28 H 1.09002 * 109.47328 * 59.99455 * 4 3 2
29 29 H 0.96705 * 114.00176 * 55.18297 * 5 3 2
30 30 H 1.08992 * 109.46750 * 300.97986 * 6 3 2
31 31 H 1.09002 * 109.46776 * 60.98349 * 6 3 2
32 32 H 0.97008 * 119.99649 * 179.97438 * 11 10 8
33 33 H 1.08993 * 110.01759 * 359.29517 * 16 7 6
34 34 H 1.08999 * 110.48815 * 335.78324 * 17 16 7
35 35 H 1.09001 * 110.48383 * 98.42811 * 17 16 7
36 36 H 1.08998 * 110.72039 * 279.57907 * 18 17 16
37 37 H 1.09000 * 110.92716 * 156.29730 * 18 17 16
38 38 H 1.08999 * 110.48793 * 203.40948 * 19 18 17
39 39 H 1.08990 * 110.60063 * 80.81396 * 19 18 17
40 40 H 1.09004 * 110.03134 * 238.56776 * 20 16 7
41 41 H 1.08998 * 110.03406 * 359.94685 * 20 16 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 1.4300 2.1991 -1.1816
5 8 1.6620 2.0813 1.2210
6 6 3.5649 1.4442 -0.1257
7 7 4.0552 2.8245 -0.1022
8 6 4.3086 3.4812 -1.2767
9 1 4.0762 4.5319 -1.3690
10 6 4.8643 2.7966 -2.3488
11 7 5.5034 1.6639 -2.1462
12 14 4.7052 3.4827 -4.0789
13 1 5.8601 4.3704 -4.3675
14 1 4.6845 2.3639 -5.0552
15 1 3.4443 4.2594 -4.1893
16 6 4.2744 3.5022 1.1781
17 6 3.4277 4.7900 1.2460
18 6 4.3348 5.8011 1.9919
19 6 5.7430 5.4720 1.4373
20 6 5.7458 3.9354 1.3000
21 1 -0.3634 0.5139 -0.8900
22 1 -0.3634 -1.0277 -0.0005
23 1 -0.3634 0.5138 0.8899
24 1 1.8933 -0.5138 -0.8900
25 1 1.8933 -0.5139 0.8900
26 1 1.7931 3.2269 -1.1814
27 1 1.7184 1.7117 -2.1130
28 1 0.3437 2.1978 -1.0921
29 1 1.9520 1.6134 2.0161
30 1 3.9986 0.8903 0.7068
31 1 3.8525 0.9724 -1.0653
32 1 5.8915 1.1853 -2.8954
33 1 4.0110 2.8384 2.0015
34 1 3.1999 5.1501 0.2427
35 1 2.5098 4.6139 1.8068
36 1 4.2947 5.6341 3.0682
37 1 4.0548 6.8267 1.7510
38 1 6.5137 5.7937 2.1377
39 1 5.8919 5.9420 0.4653
40 1 6.1964 3.4825 2.1832
41 1 6.2971 3.6406 0.4071
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000167822178.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:27:41
Heat of formation + Delta-G solvation = -66.649589 kcal
Electronic energy + Delta-G solvation = -19355.354927 eV
Core-core repulsion = 16655.357958 eV
Total energy + Delta-G solvation = -2699.996969 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-39.94778 -38.46790 -35.66171 -33.87734 -32.79399 -30.22889 -29.25100 -28.13201
-27.90737 -25.18177 -23.17706 -21.33426 -20.81558 -20.61297 -18.24419 -17.04320
-16.80261 -16.44384 -16.06312 -15.74475 -15.71732 -14.82060 -14.64879 -14.18900
-14.00053 -13.24992 -13.21589 -12.96291 -12.89879 -12.74110 -12.53502 -12.47437
-12.33447 -12.12245 -11.85566 -11.73694 -11.70530 -11.64967 -11.52561 -11.20603
-11.16544 -11.11191 -10.44379 -10.39370 -8.33386 -7.70313 -5.28406 1.42415
1.47152 1.54256 2.55222 3.31191 3.55745 3.83550 4.06557 4.08945
4.18515 4.21099 4.35363 4.42180 4.53924 4.77147 4.82421 4.85355
4.90781 4.99692 5.01769 5.03522 5.10364 5.12528 5.16620 5.26565
5.30754 5.33943 5.39917 5.43143 5.51798 5.63326 5.68317 5.71188
5.72671 5.81421 5.91992 6.59733 7.14343 7.32064 8.04211 8.55685
9.24110
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.015404 B = 0.012862 C = 0.008229
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1817.241320 B = 2176.510626 C = 3401.683982
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.144 4.144
3 C 0.120 3.880
4 C -0.112 4.112
5 O -0.559 6.559
6 C 0.133 3.867
7 N -0.578 5.578
8 C -0.223 4.223
9 H 0.046 0.954
10 C -0.035 4.035
11 N -0.920 5.920
12 Si 0.933 3.067
13 H -0.290 1.290
14 H -0.294 1.294
15 H -0.274 1.274
16 C 0.177 3.823
17 C -0.118 4.118
18 C -0.114 4.114
19 C -0.113 4.113
20 C -0.134 4.134
21 H 0.049 0.951
22 H 0.062 0.938
23 H 0.058 0.942
24 H 0.055 0.945
25 H 0.069 0.931
26 H 0.048 0.952
27 H 0.042 0.958
28 H 0.056 0.944
29 H 0.372 0.628
30 H 0.016 0.984
31 H 0.067 0.933
32 H 0.246 0.754
33 H 0.055 0.945
34 H 0.040 0.960
35 H 0.060 0.940
36 H 0.077 0.923
37 H 0.065 0.935
38 H 0.071 0.929
39 H 0.042 0.958
40 H 0.052 0.948
41 H 0.036 0.964
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.331 0.288 7.653 9.936
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.182 4.182
3 C 0.078 3.922
4 C -0.169 4.169
5 O -0.365 6.365
6 C 0.006 3.994
7 N -0.297 5.297
8 C -0.354 4.354
9 H 0.064 0.936
10 C -0.231 4.231
11 N -0.566 5.566
12 Si 0.763 3.237
13 H -0.218 1.218
14 H -0.220 1.220
15 H -0.199 1.199
16 C 0.071 3.929
17 C -0.157 4.157
18 C -0.151 4.151
19 C -0.151 4.151
20 C -0.173 4.173
21 H 0.068 0.932
22 H 0.081 0.919
23 H 0.077 0.923
24 H 0.074 0.926
25 H 0.088 0.912
26 H 0.067 0.933
27 H 0.061 0.939
28 H 0.075 0.925
29 H 0.219 0.781
30 H 0.035 0.965
31 H 0.084 0.916
32 H 0.056 0.944
33 H 0.073 0.927
34 H 0.059 0.941
35 H 0.078 0.922
36 H 0.096 0.904
37 H 0.084 0.916
38 H 0.089 0.911
39 H 0.061 0.939
40 H 0.071 0.929
41 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges -6.507 0.607 7.113 9.659
hybrid contribution 0.675 -0.336 -1.073 1.311
sum -5.832 0.272 6.040 8.401
Atomic orbital electron populations
1.21679 0.94462 1.01529 1.01959 1.22112 0.97472 0.96539 1.02079
1.21782 0.94933 0.90742 0.84773 1.21445 0.99031 1.00851 0.95622
1.86500 1.80729 1.54059 1.15166 1.21431 0.91006 0.86544 1.00430
1.43828 1.73858 1.11225 1.00809 1.18836 1.32114 0.94189 0.90233
0.93640 1.25573 0.97698 0.98548 1.01252 1.70107 1.37527 1.18876
1.30068 0.85806 0.77929 0.77413 0.82583 1.21759 1.22018 1.19931
1.21078 0.91625 0.92919 0.87326 1.22578 0.98003 0.96133 0.98984
1.22428 0.94426 0.98509 0.99780 1.22203 0.97752 0.95358 0.99761
1.22567 0.99206 0.96099 0.99454 0.93194 0.91919 0.92318 0.92599
0.91196 0.93310 0.93919 0.92524 0.78144 0.96519 0.91553 0.94448
0.92682 0.94107 0.92168 0.90441 0.91646 0.91075 0.93918 0.92906
0.94531
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.59 9.32 71.98 0.67 -2.92 16
2 C -0.14 -4.36 5.16 30.59 0.16 -4.21 16
3 C 0.12 4.41 0.86 -10.79 -0.01 4.40 16
4 C -0.11 -4.45 7.87 71.98 0.57 -3.89 16
5 O -0.56 -18.88 11.24 -148.98 -1.68 -20.55 16
6 C 0.13 5.93 4.42 86.38 0.38 6.31 16
7 N -0.58 -27.17 2.01 -674.03 -1.35 -28.53 16
8 C -0.22 -11.68 6.35 84.03 0.53 -11.15 16
9 H 0.05 2.49 6.65 -2.91 -0.02 2.47 16
10 C -0.03 -1.88 4.93 84.86 0.42 -1.46 16
11 N -0.92 -52.68 11.49 21.65 0.25 -52.43 16
12 Si 0.93 44.61 29.60 68.60 2.03 46.64 16
13 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16
14 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16
15 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16
16 C 0.18 7.20 2.59 45.71 0.12 7.31 16
17 C -0.12 -4.36 6.42 31.70 0.20 -4.15 16
18 C -0.11 -3.47 6.91 31.91 0.22 -3.25 16
19 C -0.11 -3.84 6.83 31.67 0.22 -3.63 16
20 C -0.13 -5.38 6.27 31.32 0.20 -5.18 16
21 H 0.05 1.34 6.35 -2.39 -0.02 1.33 16
22 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16
23 H 0.06 1.48 7.82 -2.39 -0.02 1.46 16
24 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16
25 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16
26 H 0.05 2.20 6.62 -2.39 -0.02 2.19 16
27 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16
28 H 0.06 1.97 6.35 -2.39 -0.02 1.96 16
29 H 0.37 10.07 9.02 -74.05 -0.67 9.41 16
30 H 0.02 0.73 8.07 -2.39 -0.02 0.71 16
31 H 0.07 3.46 5.57 -2.39 -0.01 3.44 16
32 H 0.25 13.84 8.31 -92.70 -0.77 13.07 16
33 H 0.05 2.10 7.56 -2.39 -0.02 2.08 16
34 H 0.04 1.74 6.33 -2.39 -0.02 1.73 16
35 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16
36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16
37 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16
38 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16
39 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16
40 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16
41 H 0.04 1.80 7.34 -2.39 -0.02 1.78 16
Total: -1.00 -58.79 311.00 3.25 -55.55
By element:
Atomic # 1 Polarization: 20.82 SS G_CDS: 0.32 Total: 21.14 kcal
Atomic # 6 Polarization: -25.49 SS G_CDS: 3.68 Total: -21.82 kcal
Atomic # 7 Polarization: -79.85 SS G_CDS: -1.11 Total: -80.96 kcal
Atomic # 8 Polarization: -18.88 SS G_CDS: -1.68 Total: -20.55 kcal
Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal
Total: -58.79 3.25 -55.55 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000167822178.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.103 kcal
(2) G-P(sol) polarization free energy of solvation -58.793 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.896 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.246 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.547 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.650 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds