Wall clock time and date at job start Mon Mar 30 2020 04:56:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53000 * 109.47391 * 2 1
4 4 C 1.53009 * 109.47015 * 120.00105 * 2 1 3
5 5 N 1.46895 * 109.47173 * 174.16837 * 4 2 1
6 6 C 1.46898 * 111.00123 * 160.94716 * 5 4 2
7 7 C 1.50699 * 109.47525 * 194.19138 * 6 5 4
8 8 H 1.08003 * 119.99676 * 5.10989 * 7 6 5
9 9 C 1.37874 * 119.99909 * 185.11473 * 7 6 5
10 10 N 1.31510 * 120.00300 * 359.97438 * 9 7 6
11 11 Si 1.86803 * 119.99774 * 180.02562 * 9 7 6
12 12 H 1.48506 * 109.47086 * 59.99744 * 11 9 7
13 13 H 1.48499 * 109.47109 * 179.97438 * 11 9 7
14 14 H 1.48501 * 109.47014 * 299.99906 * 11 9 7
15 15 C 1.46902 * 110.99881 * 284.90217 * 5 4 2
16 16 H 1.08995 * 110.53899 * 221.96511 * 15 5 4
17 17 C 1.55006 * 110.52677 * 344.63288 * 15 5 4
18 18 C 1.54891 * 102.75783 * 156.61583 * 17 15 5
19 19 C 1.54267 * 104.19073 * 322.04225 * 18 17 15
20 20 C 1.53877 * 106.60117 * 23.61255 * 19 18 17
21 21 H 1.09008 * 110.03034 * 119.32927 * 20 19 18
22 22 O 1.42891 * 110.03149 * 240.71187 * 20 19 18
23 23 H 1.08998 * 109.47192 * 300.00160 * 1 2 3
24 24 H 1.08999 * 109.46890 * 59.99720 * 1 2 3
25 25 H 1.08997 * 109.46941 * 179.97438 * 1 2 3
26 26 H 1.08998 * 109.47192 * 239.99840 * 2 1 3
27 27 H 1.09002 * 109.47366 * 184.79046 * 3 2 1
28 28 H 1.08991 * 109.47195 * 304.79382 * 3 2 1
29 29 H 1.09003 * 109.47021 * 64.79636 * 3 2 1
30 30 H 1.08997 * 109.46819 * 54.16835 * 4 2 1
31 31 H 1.09003 * 109.46760 * 294.16875 * 4 2 1
32 32 H 1.08997 * 109.47430 * 314.19638 * 6 5 4
33 33 H 1.09007 * 109.46810 * 74.19338 * 6 5 4
34 34 H 0.96998 * 119.99781 * 180.02562 * 10 9 7
35 35 H 1.09001 * 110.76731 * 38.28955 * 17 15 5
36 36 H 1.09000 * 110.89977 * 275.00138 * 17 15 5
37 37 H 1.09003 * 110.48563 * 203.36762 * 18 17 15
38 38 H 1.08999 * 110.48857 * 80.72135 * 18 17 15
39 39 H 1.09001 * 110.03738 * 264.32136 * 19 18 17
40 40 H 1.09004 * 110.06723 * 142.91893 * 19 18 17
41 41 H 0.96703 * 114.00559 * 295.72461 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7213 1.2493
5 7 3.5022 -0.8444 1.1811
6 6 4.0712 -1.1050 2.5100
7 6 5.5610 -0.8812 2.4714
8 1 6.0263 -0.4969 1.5757
9 6 6.3300 -1.1672 3.5795
10 7 5.7634 -1.6348 4.6703
11 14 8.1766 -0.8892 3.5318
12 1 8.4545 0.5446 3.2625
13 1 8.7685 -1.2705 4.8393
14 1 8.7746 -1.7199 2.4560
15 6 3.8987 -1.8869 0.2250
16 1 4.7167 -2.4841 0.6278
17 6 2.6891 -2.7900 -0.1270
18 6 3.0873 -3.3731 -1.5056
19 6 3.7882 -2.2013 -2.2237
20 6 4.3035 -1.2567 -1.1237
21 1 5.3884 -1.1695 -1.1845
22 8 3.7007 0.0314 -1.2628
23 1 -0.3633 0.5138 0.8899
24 1 -0.3633 0.5139 -0.8900
25 1 -0.3633 -1.0276 -0.0005
26 1 1.8934 -0.5138 -0.8899
27 1 3.1267 1.4437 -0.0858
28 1 1.6084 1.9805 -0.8439
29 1 1.7486 1.9309 0.9299
30 1 1.5939 -1.7144 1.3030
31 1 1.7644 -0.1507 2.1362
32 1 3.6210 -0.4291 3.2370
33 1 3.8660 -2.1364 2.7972
34 1 6.3044 -1.8356 5.4499
35 1 1.7762 -2.1997 -0.2064
36 1 2.5703 -3.5852 0.6090
37 1 2.2010 -3.6841 -2.0587
38 1 3.7741 -4.2103 -1.3818
39 1 3.0784 -1.6772 -2.8636
40 1 4.6229 -2.5726 -2.8183
41 1 3.9355 0.4893 -2.0815
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000252388735.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:56:24
Heat of formation + Delta-G solvation = -41.659393 kcal
Electronic energy + Delta-G solvation = -19279.074518 eV
Core-core repulsion = 16580.161206 eV
Total energy + Delta-G solvation = -2698.913313 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.40727 -35.87971 -34.52199 -33.58936 -32.00511 -27.86542 -27.09376 -26.69403
-26.38870 -24.04869 -21.42529 -20.27589 -19.64616 -18.64958 -16.65279 -16.22211
-15.47588 -14.96173 -14.53799 -14.47505 -13.87130 -13.43913 -13.22549 -12.94962
-12.34423 -12.22939 -11.86497 -11.61572 -11.36207 -11.31403 -11.02332 -10.87830
-10.81464 -10.72080 -10.61018 -10.35086 -10.12327 -9.99645 -9.79829 -9.70609
-9.52057 -9.09395 -9.00829 -8.37017 -6.93159 -5.96038 -3.97079 3.35637
3.39878 3.42881 4.46412 4.72897 4.89752 5.00217 5.22377 5.36850
5.38624 5.55963 5.61854 5.73937 5.81408 5.88073 5.95712 5.99768
6.08065 6.09370 6.21736 6.28175 6.31642 6.38554 6.39404 6.46266
6.50303 6.66928 6.74492 6.76568 6.86681 7.22704 7.37324 7.44448
7.49127 7.92790 8.17662 8.25371 8.44790 8.70925 9.12808 9.67110
11.14142
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.023698 B = 0.008154 C = 0.007332
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1181.259319 B = 3433.130913 C = 3817.765554
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.089 4.089
3 C -0.122 4.122
4 C 0.057 3.943
5 N -0.509 5.509
6 C 0.191 3.809
7 C -0.500 4.500
8 H 0.062 0.938
9 C 0.053 3.947
10 N -0.900 5.900
11 Si 0.895 3.105
12 H -0.277 1.277
13 H -0.289 1.289
14 H -0.278 1.278
15 C 0.100 3.900
16 H 0.090 0.910
17 C -0.164 4.164
18 C -0.118 4.118
19 C -0.156 4.156
20 C 0.104 3.896
21 H 0.050 0.950
22 O -0.518 6.518
23 H 0.046 0.954
24 H 0.046 0.954
25 H 0.042 0.958
26 H 0.095 0.905
27 H 0.091 0.909
28 H 0.025 0.975
29 H 0.028 0.972
30 H 0.028 0.972
31 H 0.055 0.945
32 H 0.024 0.976
33 H -0.009 1.009
34 H 0.260 0.740
35 H 0.090 0.910
36 H 0.058 0.942
37 H 0.057 0.943
38 H 0.061 0.939
39 H 0.066 0.934
40 H 0.059 0.941
41 H 0.348 0.652
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.764 -0.188 -12.829 14.504
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.108 4.108
3 C -0.179 4.179
4 C -0.071 4.071
5 N -0.231 5.231
6 C 0.065 3.935
7 C -0.539 4.539
8 H 0.080 0.920
9 C -0.147 4.147
10 N -0.540 5.540
11 Si 0.723 3.277
12 H -0.202 1.202
13 H -0.215 1.215
14 H -0.204 1.204
15 C -0.010 4.010
16 H 0.108 0.892
17 C -0.203 4.203
18 C -0.157 4.157
19 C -0.195 4.195
20 C 0.044 3.956
21 H 0.068 0.932
22 O -0.320 6.320
23 H 0.065 0.935
24 H 0.065 0.935
25 H 0.061 0.939
26 H 0.113 0.887
27 H 0.110 0.890
28 H 0.044 0.956
29 H 0.048 0.952
30 H 0.045 0.955
31 H 0.074 0.926
32 H 0.042 0.958
33 H 0.009 0.991
34 H 0.070 0.930
35 H 0.108 0.892
36 H 0.077 0.923
37 H 0.076 0.924
38 H 0.080 0.920
39 H 0.085 0.915
40 H 0.077 0.923
41 H 0.192 0.808
Dipole moment (debyes) X Y Z Total
from point charges -6.775 0.055 -12.182 13.940
hybrid contribution 0.956 -0.638 -0.077 1.152
sum -5.820 -0.583 -12.260 13.583
Atomic orbital electron populations
1.21935 0.97809 1.00364 1.00722 1.21312 0.91911 0.97877 0.99695
1.21676 1.03911 0.94328 0.98004 1.22260 0.89772 0.97714 0.97372
1.61932 1.07059 1.43742 1.10361 1.19809 0.94910 0.94736 0.84013
1.21148 0.91875 1.41967 0.98896 0.92001 1.24993 0.98608 0.95568
0.95558 1.69953 1.35655 1.45261 1.03180 0.86609 0.85471 0.78652
0.76926 1.20245 1.21461 1.20421 1.22488 0.96532 0.90627 0.91364
0.89156 1.23442 1.01147 0.99551 0.96139 1.22201 0.99485 0.97398
0.96577 1.22952 0.99999 0.97886 0.98615 1.22493 0.95404 0.83410
0.94278 0.93211 1.87166 1.71680 1.30300 1.42892 0.93515 0.93538
0.93853 0.88709 0.89025 0.95568 0.95246 0.95454 0.92631 0.95825
0.99122 0.93014 0.89163 0.92293 0.92415 0.92050 0.91486 0.92259
0.80768
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.06 9.19 37.16 0.34 -1.72 16
2 C -0.09 -1.42 1.55 -90.61 -0.14 -1.56 16
3 C -0.12 -1.99 8.11 37.16 0.30 -1.69 16
4 C 0.06 1.08 3.90 -3.82 -0.01 1.07 16
5 N -0.51 -10.93 3.41 -226.02 -0.77 -11.70 16
6 C 0.19 5.03 4.58 -4.98 -0.02 5.00 16
7 C -0.50 -14.12 8.40 -34.44 -0.29 -14.41 16
8 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16
9 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16
10 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16
11 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16
12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
15 C 0.10 1.90 2.69 -65.99 -0.18 1.72 16
16 H 0.09 1.98 7.14 -51.93 -0.37 1.61 16
17 C -0.16 -2.66 4.68 -24.67 -0.12 -2.77 16
18 C -0.12 -1.58 6.83 -25.07 -0.17 -1.75 16
19 C -0.16 -2.00 6.55 -25.61 -0.17 -2.16 16
20 C 0.10 1.65 3.93 -25.61 -0.10 1.55 16
21 H 0.05 0.83 8.14 -51.92 -0.42 0.40 16
22 O -0.52 -7.74 5.69 -35.23 -0.20 -7.94 16
23 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16
24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16
25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16
26 H 0.10 1.51 4.15 -51.93 -0.22 1.29 16
27 H 0.09 1.67 5.65 -51.93 -0.29 1.37 16
28 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16
29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16
30 H 0.03 0.51 5.61 -51.93 -0.29 0.22 16
31 H 0.06 1.12 7.69 -51.93 -0.40 0.72 16
32 H 0.02 0.67 7.73 -51.93 -0.40 0.27 16
33 H -0.01 -0.26 8.08 -51.92 -0.42 -0.68 16
34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
35 H 0.09 1.44 4.01 -51.93 -0.21 1.23 16
36 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16
37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
39 H 0.07 0.79 7.95 -51.93 -0.41 0.37 16
40 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16
41 H 0.35 3.80 9.12 45.56 0.42 4.21 16
LS Contribution 303.78 15.07 4.58 4.58
Total: -1.00 -29.84 303.78 -7.70 -37.54
By element:
Atomic # 1 Polarization: 8.64 SS G_CDS: -6.37 Total: 2.27 kcal
Atomic # 6 Polarization: -14.64 SS G_CDS: -0.65 Total: -15.29 kcal
Atomic # 7 Polarization: -37.99 SS G_CDS: -0.04 Total: -38.03 kcal
Atomic # 8 Polarization: -7.74 SS G_CDS: -0.20 Total: -7.94 kcal
Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal
Total LS contribution 4.58 Total: 4.58 kcal
Total: -29.84 -7.70 -37.54 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000252388735.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.116 kcal
(2) G-P(sol) polarization free energy of solvation -29.841 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.957 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.544 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.659 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds