Wall clock time and date at job start Mon Mar 30 2020 04:56:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53000 * 109.47391 * 2 1
4 4 C 1.53009 * 109.47015 * 120.00105 * 2 1 3
5 5 N 1.46895 * 109.47173 * 174.16837 * 4 2 1
6 6 C 1.46898 * 111.00123 * 160.94716 * 5 4 2
7 7 C 1.50699 * 109.47525 * 194.19138 * 6 5 4
8 8 H 1.08003 * 119.99676 * 5.10989 * 7 6 5
9 9 C 1.37874 * 119.99909 * 185.11473 * 7 6 5
10 10 N 1.31510 * 120.00300 * 359.97438 * 9 7 6
11 11 Si 1.86803 * 119.99774 * 180.02562 * 9 7 6
12 12 H 1.48506 * 109.47086 * 59.99744 * 11 9 7
13 13 H 1.48499 * 109.47109 * 179.97438 * 11 9 7
14 14 H 1.48501 * 109.47014 * 299.99906 * 11 9 7
15 15 C 1.46902 * 110.99881 * 284.90217 * 5 4 2
16 16 H 1.08995 * 110.53899 * 221.96511 * 15 5 4
17 17 C 1.55006 * 110.52677 * 344.63288 * 15 5 4
18 18 C 1.54891 * 102.75783 * 156.61583 * 17 15 5
19 19 C 1.54267 * 104.19073 * 322.04225 * 18 17 15
20 20 C 1.53877 * 106.60117 * 23.61255 * 19 18 17
21 21 H 1.09008 * 110.03034 * 119.32927 * 20 19 18
22 22 O 1.42891 * 110.03149 * 240.71187 * 20 19 18
23 23 H 1.08998 * 109.47192 * 300.00160 * 1 2 3
24 24 H 1.08999 * 109.46890 * 59.99720 * 1 2 3
25 25 H 1.08997 * 109.46941 * 179.97438 * 1 2 3
26 26 H 1.08998 * 109.47192 * 239.99840 * 2 1 3
27 27 H 1.09002 * 109.47366 * 184.79046 * 3 2 1
28 28 H 1.08991 * 109.47195 * 304.79382 * 3 2 1
29 29 H 1.09003 * 109.47021 * 64.79636 * 3 2 1
30 30 H 1.08997 * 109.46819 * 54.16835 * 4 2 1
31 31 H 1.09003 * 109.46760 * 294.16875 * 4 2 1
32 32 H 1.08997 * 109.47430 * 314.19638 * 6 5 4
33 33 H 1.09007 * 109.46810 * 74.19338 * 6 5 4
34 34 H 0.96998 * 119.99781 * 180.02562 * 10 9 7
35 35 H 1.09001 * 110.76731 * 38.28955 * 17 15 5
36 36 H 1.09000 * 110.89977 * 275.00138 * 17 15 5
37 37 H 1.09003 * 110.48563 * 203.36762 * 18 17 15
38 38 H 1.08999 * 110.48857 * 80.72135 * 18 17 15
39 39 H 1.09001 * 110.03738 * 264.32136 * 19 18 17
40 40 H 1.09004 * 110.06723 * 142.91893 * 19 18 17
41 41 H 0.96703 * 114.00559 * 295.72461 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7213 1.2493
5 7 3.5022 -0.8444 1.1811
6 6 4.0712 -1.1050 2.5100
7 6 5.5610 -0.8812 2.4714
8 1 6.0263 -0.4969 1.5757
9 6 6.3300 -1.1672 3.5795
10 7 5.7634 -1.6348 4.6703
11 14 8.1766 -0.8892 3.5318
12 1 8.4545 0.5446 3.2625
13 1 8.7685 -1.2705 4.8393
14 1 8.7746 -1.7199 2.4560
15 6 3.8987 -1.8869 0.2250
16 1 4.7167 -2.4841 0.6278
17 6 2.6891 -2.7900 -0.1270
18 6 3.0873 -3.3731 -1.5056
19 6 3.7882 -2.2013 -2.2237
20 6 4.3035 -1.2567 -1.1237
21 1 5.3884 -1.1695 -1.1845
22 8 3.7007 0.0314 -1.2628
23 1 -0.3633 0.5138 0.8899
24 1 -0.3633 0.5139 -0.8900
25 1 -0.3633 -1.0276 -0.0005
26 1 1.8934 -0.5138 -0.8899
27 1 3.1267 1.4437 -0.0858
28 1 1.6084 1.9805 -0.8439
29 1 1.7486 1.9309 0.9299
30 1 1.5939 -1.7144 1.3030
31 1 1.7644 -0.1507 2.1362
32 1 3.6210 -0.4291 3.2370
33 1 3.8660 -2.1364 2.7972
34 1 6.3044 -1.8356 5.4499
35 1 1.7762 -2.1997 -0.2064
36 1 2.5703 -3.5852 0.6090
37 1 2.2010 -3.6841 -2.0587
38 1 3.7741 -4.2103 -1.3818
39 1 3.0784 -1.6772 -2.8636
40 1 4.6229 -2.5726 -2.8183
41 1 3.9355 0.4893 -2.0815
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000252388735.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:56:24
Heat of formation + Delta-G solvation = -61.169032 kcal
Electronic energy + Delta-G solvation = -19279.920520 eV
Core-core repulsion = 16580.161206 eV
Total energy + Delta-G solvation = -2699.759314 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-40.81590 -37.27212 -35.85178 -35.28741 -33.88585 -29.59334 -28.44199 -28.15522
-27.68651 -25.82296 -23.29634 -21.43014 -21.01799 -20.09914 -18.39647 -17.96415
-16.95678 -16.65592 -16.16181 -15.68082 -15.26756 -15.10303 -14.54980 -14.23340
-14.16853 -13.80385 -13.38348 -13.00013 -12.91995 -12.75461 -12.72044 -12.45749
-12.28104 -12.10059 -12.04860 -11.94282 -11.65609 -11.52017 -11.34394 -11.17723
-10.95121 -10.90975 -10.59667 -10.21630 -8.70355 -8.17829 -6.29080 1.38134
1.41970 1.49823 2.39613 3.12187 3.28674 3.66771 3.80107 3.91937
4.16043 4.22515 4.38246 4.49334 4.59359 4.63519 4.66275 4.71910
4.80746 4.89969 4.95458 5.02890 5.07699 5.13517 5.13711 5.19708
5.20869 5.25102 5.30429 5.37766 5.43228 5.51163 5.53948 5.69541
5.91342 6.10718 6.13797 6.51243 6.81102 6.89706 7.29141 7.41321
8.91607
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.023698 B = 0.008154 C = 0.007332
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1181.259319 B = 3433.130913 C = 3817.765554
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.079 4.079
3 C -0.117 4.117
4 C 0.055 3.945
5 N -0.510 5.510
6 C 0.207 3.793
7 C -0.513 4.513
8 H 0.060 0.940
9 C -0.002 4.002
10 N -0.937 5.937
11 Si 0.968 3.032
12 H -0.269 1.269
13 H -0.283 1.283
14 H -0.266 1.266
15 C 0.087 3.913
16 H 0.050 0.950
17 C -0.160 4.160
18 C -0.113 4.113
19 C -0.143 4.143
20 C 0.111 3.889
21 H 0.037 0.963
22 O -0.529 6.529
23 H 0.041 0.959
24 H 0.068 0.932
25 H 0.051 0.949
26 H 0.104 0.896
27 H 0.071 0.929
28 H 0.052 0.948
29 H 0.013 0.987
30 H 0.030 0.970
31 H 0.032 0.968
32 H -0.010 1.010
33 H -0.043 1.043
34 H 0.263 0.737
35 H 0.097 0.903
36 H 0.042 0.958
37 H 0.083 0.917
38 H 0.061 0.939
39 H 0.089 0.911
40 H 0.077 0.923
41 H 0.370 0.630
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.863 0.057 -15.726 17.158
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.097 4.097
3 C -0.174 4.174
4 C -0.073 4.073
5 N -0.232 5.232
6 C 0.081 3.919
7 C -0.551 4.551
8 H 0.078 0.922
9 C -0.199 4.199
10 N -0.578 5.578
11 Si 0.792 3.208
12 H -0.194 1.194
13 H -0.208 1.208
14 H -0.191 1.191
15 C -0.022 4.022
16 H 0.069 0.931
17 C -0.198 4.198
18 C -0.151 4.151
19 C -0.180 4.180
20 C 0.051 3.949
21 H 0.055 0.945
22 O -0.334 6.334
23 H 0.060 0.940
24 H 0.087 0.913
25 H 0.070 0.930
26 H 0.122 0.878
27 H 0.090 0.910
28 H 0.071 0.929
29 H 0.032 0.968
30 H 0.048 0.952
31 H 0.050 0.950
32 H 0.008 0.992
33 H -0.026 1.026
34 H 0.072 0.928
35 H 0.115 0.885
36 H 0.061 0.939
37 H 0.102 0.898
38 H 0.080 0.920
39 H 0.108 0.892
40 H 0.095 0.905
41 H 0.217 0.783
Dipole moment (debyes) X Y Z Total
from point charges -6.885 0.307 -15.118 16.615
hybrid contribution 0.944 -0.705 0.854 1.455
sum -5.941 -0.397 -14.264 15.457
Atomic orbital electron populations
1.21888 0.95610 1.01265 1.01626 1.21239 0.93594 0.97128 0.97774
1.21603 1.02751 0.94726 0.98312 1.22392 0.88347 0.97995 0.98531
1.61958 1.08570 1.44807 1.07847 1.19440 0.94624 0.91646 0.86216
1.21384 0.92798 1.41998 0.98941 0.92217 1.25939 1.03958 0.95016
0.94983 1.70095 1.37684 1.46108 1.03922 0.85460 0.78996 0.78920
0.77375 1.19436 1.20828 1.19132 1.22552 0.96687 0.90705 0.92293
0.93125 1.23357 0.99951 0.98668 0.97825 1.22207 1.00672 0.97566
0.94647 1.22847 1.00981 0.96700 0.97518 1.22265 0.94839 0.84595
0.93184 0.94485 1.87092 1.71533 1.30076 1.44748 0.93981 0.91277
0.93012 0.87807 0.91013 0.92886 0.96815 0.95223 0.94965 0.99201
1.02569 0.92813 0.88508 0.93946 0.89803 0.92015 0.89249 0.90463
0.78257
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.63 9.19 71.98 0.66 -2.96 16
2 C -0.08 -2.39 1.55 -10.79 -0.02 -2.41 16
3 C -0.12 -3.65 8.11 71.98 0.58 -3.06 16
4 C 0.06 2.15 3.90 86.31 0.34 2.49 16
5 N -0.51 -22.83 3.41 -868.99 -2.97 -25.79 16
6 C 0.21 11.69 4.58 85.56 0.39 12.08 16
7 C -0.51 -30.18 8.40 25.60 0.22 -29.96 16
8 H 0.06 3.46 7.81 -2.91 -0.02 3.44 16
9 C 0.00 -0.09 5.46 84.65 0.46 0.37 16
10 N -0.94 -58.38 13.29 21.45 0.28 -58.09 16
11 Si 0.97 45.55 29.54 68.60 2.03 47.58 16
12 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16
13 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16
14 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16
15 C 0.09 3.39 2.69 46.03 0.12 3.51 16
16 H 0.05 2.35 7.14 -2.39 -0.02 2.33 16
17 C -0.16 -5.07 4.68 31.93 0.15 -4.92 16
18 C -0.11 -2.70 6.83 31.67 0.22 -2.48 16
19 C -0.14 -3.13 6.55 31.32 0.21 -2.92 16
20 C 0.11 3.37 3.93 31.32 0.12 3.49 16
21 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16
22 O -0.53 -14.71 5.69 -148.98 -0.85 -15.56 16
23 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16
24 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16
25 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16
26 H 0.10 3.00 4.15 -2.39 -0.01 2.99 16
27 H 0.07 2.55 5.65 -2.39 -0.01 2.54 16
28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16
29 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16
30 H 0.03 1.13 5.61 -2.39 -0.01 1.12 16
31 H 0.03 1.37 7.69 -2.39 -0.02 1.35 16
32 H -0.01 -0.62 7.73 -2.39 -0.02 -0.64 16
33 H -0.04 -2.67 8.08 -2.38 -0.02 -2.69 16
34 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16
35 H 0.10 2.94 4.01 -2.39 -0.01 2.93 16
36 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16
37 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16
38 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16
39 H 0.09 1.63 7.95 -2.39 -0.02 1.61 16
40 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16
41 H 0.37 6.88 9.12 -74.06 -0.68 6.21 16
Total: -1.00 -67.63 303.78 2.27 -65.36
By element:
Atomic # 1 Polarization: 12.97 SS G_CDS: 0.32 Total: 13.29 kcal
Atomic # 6 Polarization: -30.23 SS G_CDS: 3.45 Total: -26.78 kcal
Atomic # 7 Polarization: -81.20 SS G_CDS: -2.68 Total: -83.89 kcal
Atomic # 8 Polarization: -14.71 SS G_CDS: -0.85 Total: -15.56 kcal
Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal
Total: -67.63 2.27 -65.36 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000252388735.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.189 kcal
(2) G-P(sol) polarization free energy of solvation -67.626 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.438 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.269 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.358 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.169 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds