Wall clock time and date at job start Mon Mar 30 2020 03:25:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42908 * 1
3 3 C 1.42907 * 113.99635 * 2 1
4 4 C 1.53002 * 109.46775 * 180.02562 * 3 2 1
5 5 N 1.46901 * 109.47055 * 64.99579 * 4 3 2
6 6 C 1.46847 * 111.00144 * 66.04768 * 5 4 3
7 7 C 1.53044 * 109.51335 * 185.83239 * 6 5 4
8 8 C 1.53117 * 109.27792 * 300.82256 * 7 6 5
9 9 H 1.09004 * 109.52347 * 297.75632 * 8 7 6
10 10 C 1.50697 * 109.52162 * 177.62499 * 8 7 6
11 11 H 1.08001 * 119.99727 * 240.00361 * 10 8 7
12 12 C 1.37873 * 120.00064 * 59.99875 * 10 8 7
13 13 N 1.31512 * 120.00051 * 0.02562 * 12 10 8
14 14 Si 1.86807 * 120.00013 * 179.97438 * 12 10 8
15 15 H 1.48502 * 109.46663 * 90.00253 * 14 12 10
16 16 H 1.48498 * 109.47099 * 210.00354 * 14 12 10
17 17 H 1.48499 * 109.46989 * 330.00503 * 14 12 10
18 18 C 1.53127 * 109.15989 * 57.65607 * 8 7 6
19 19 C 1.52999 * 109.49879 * 62.28470 * 18 8 7
20 20 C 1.52999 * 109.49906 * 182.36450 * 18 8 7
21 21 C 1.46830 * 110.98168 * 190.26186 * 5 4 3
22 22 H 1.09000 * 109.46807 * 300.00259 * 1 2 3
23 23 H 1.08996 * 109.46757 * 60.00217 * 1 2 3
24 24 H 1.08998 * 109.46424 * 180.02562 * 1 2 3
25 25 H 1.08989 * 109.47558 * 59.99746 * 3 2 1
26 26 H 1.09006 * 109.46839 * 299.99238 * 3 2 1
27 27 H 1.08999 * 109.47028 * 304.99424 * 4 3 2
28 28 H 1.08996 * 109.47036 * 184.99216 * 4 3 2
29 29 H 1.09002 * 109.46448 * 65.81961 * 6 5 4
30 30 H 1.08994 * 109.45958 * 305.84326 * 6 5 4
31 31 H 1.09001 * 109.49858 * 60.76701 * 7 6 5
32 32 H 1.09002 * 109.49779 * 180.84687 * 7 6 5
33 33 H 0.97006 * 120.00227 * 179.97438 * 13 12 10
34 34 H 1.09002 * 109.47352 * 60.00285 * 19 18 8
35 35 H 1.09001 * 109.46576 * 179.97438 * 19 18 8
36 36 H 1.08996 * 109.47348 * 299.99625 * 19 18 8
37 37 H 1.08998 * 109.47410 * 60.00497 * 20 18 8
38 38 H 1.09001 * 109.46674 * 179.97438 * 20 18 8
39 39 H 1.08992 * 109.47271 * 299.99740 * 20 18 8
40 40 H 1.08995 * 109.46742 * 54.13906 * 21 5 4
41 41 H 1.09004 * 109.46459 * 294.16736 * 21 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0103 1.3056 0.0000
4 6 3.5355 1.1848 -0.0006
5 7 3.9769 0.5627 -1.2561
6 6 3.6951 1.4352 -2.4032
7 6 4.0329 0.6981 -3.7012
8 6 5.5121 0.3028 -3.6878
9 1 6.1288 1.2007 -3.6465
10 6 5.8371 -0.4743 -4.9374
11 1 6.2092 -1.4855 -4.8630
12 6 5.6592 0.1054 -6.1756
13 7 5.2064 1.3368 -6.2662
14 14 6.0627 -0.8577 -7.7246
15 1 4.8572 -1.5994 -8.1743
16 1 6.4939 0.0800 -8.7922
17 1 7.1574 -1.8194 -7.4384
18 6 5.7893 -0.5652 -2.4572
19 6 4.9641 -1.8508 -2.5427
20 6 7.2776 -0.9159 -2.4042
21 6 5.4005 0.2084 -1.1953
22 1 -0.3633 0.5139 0.8900
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3632 -1.0277 0.0005
25 1 1.6886 1.8465 0.8898
26 1 1.6887 1.8464 -0.8901
27 1 3.8515 0.5684 0.8410
28 1 3.9785 2.1766 0.0888
29 1 4.3010 2.3383 -2.3302
30 1 2.6392 1.7053 -2.4032
31 1 3.4174 -0.1979 -3.7816
32 1 3.8379 1.3512 -4.5519
33 1 5.0816 1.7449 -7.1374
34 1 5.2389 -2.3997 -3.4434
35 1 5.1622 -2.4685 -1.6667
36 1 3.9040 -1.6004 -2.5790
37 1 7.8648 0.0003 -2.3419
38 1 7.4743 -1.5334 -1.5278
39 1 7.5540 -1.4641 -3.3048
40 1 5.5832 -0.4122 -0.3181
41 1 5.9985 1.1173 -1.1279
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259108683.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:25:27
Heat of formation + Delta-G solvation = -52.627561 kcal
Electronic energy + Delta-G solvation = -18890.677959 eV
Core-core repulsion = 16191.289031 eV
Total energy + Delta-G solvation = -2699.388928 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.00275 -37.49909 -34.66523 -32.56273 -30.64225 -29.11201 -26.30934 -26.16455
-26.06332 -24.58591 -22.59314 -21.27751 -19.94362 -17.43401 -16.32697 -16.13958
-15.91808 -14.92806 -14.79964 -14.24851 -14.03473 -13.53131 -13.36495 -12.85201
-12.62327 -12.17529 -12.03775 -11.76540 -11.60441 -11.17308 -11.03407 -10.91380
-10.79075 -10.71317 -10.43727 -10.33413 -10.22569 -10.05359 -9.71681 -9.43180
-9.19407 -8.69785 -8.48096 -8.19862 -7.55919 -5.89745 -3.92834 3.35525
3.42280 3.45313 3.98613 4.48098 4.51972 5.20556 5.30829 5.39824
5.45935 5.48357 5.52475 5.68874 5.73931 5.82733 5.90641 5.99845
6.13631 6.20064 6.21904 6.37127 6.44423 6.58393 6.65034 6.73653
6.91493 6.99280 7.14146 7.26312 7.33312 7.38725 7.46115 7.54685
7.72431 7.82296 7.95255 8.14337 8.24729 8.58104 9.09277 9.70158
11.16565
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.028279 B = 0.006970 C = 0.006377
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 989.879831 B = 4016.139559 C = 4389.765929
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.371 6.371
3 C 0.067 3.933
4 C 0.055 3.945
5 N -0.523 5.523
6 C 0.054 3.946
7 C -0.105 4.105
8 C 0.062 3.938
9 H 0.018 0.982
10 C -0.498 4.498
11 H 0.058 0.942
12 C 0.059 3.941
13 N -0.894 5.894
14 Si 0.886 3.114
15 H -0.282 1.282
16 H -0.289 1.289
17 H -0.275 1.275
18 C -0.056 4.056
19 C -0.116 4.116
20 C -0.127 4.127
21 C 0.072 3.928
22 H 0.032 0.968
23 H 0.038 0.962
24 H 0.082 0.918
25 H 0.043 0.957
26 H 0.051 0.949
27 H 0.075 0.925
28 H 0.040 0.960
29 H 0.019 0.981
30 H 0.054 0.946
31 H 0.047 0.953
32 H 0.090 0.910
33 H 0.257 0.743
34 H 0.052 0.948
35 H 0.022 0.978
36 H 0.062 0.938
37 H 0.041 0.959
38 H 0.031 0.969
39 H 0.064 0.936
40 H 0.057 0.943
41 H 0.020 0.980
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.141 0.135 11.288 12.404
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.289 6.289
3 C -0.010 4.010
4 C -0.074 4.074
5 N -0.247 5.247
6 C -0.073 4.073
7 C -0.143 4.143
8 C 0.043 3.957
9 H 0.036 0.964
10 C -0.536 4.536
11 H 0.076 0.924
12 C -0.141 4.141
13 N -0.534 5.534
14 Si 0.714 3.286
15 H -0.209 1.209
16 H -0.215 1.215
17 H -0.200 1.200
18 C -0.056 4.056
19 C -0.173 4.173
20 C -0.185 4.185
21 C -0.056 4.056
22 H 0.051 0.949
23 H 0.057 0.943
24 H 0.100 0.900
25 H 0.061 0.939
26 H 0.069 0.931
27 H 0.093 0.907
28 H 0.058 0.942
29 H 0.037 0.963
30 H 0.072 0.928
31 H 0.066 0.934
32 H 0.109 0.891
33 H 0.067 0.933
34 H 0.071 0.929
35 H 0.042 0.958
36 H 0.081 0.919
37 H 0.060 0.940
38 H 0.050 0.950
39 H 0.083 0.917
40 H 0.075 0.925
41 H 0.038 0.962
Dipole moment (debyes) X Y Z Total
from point charges -5.332 -0.326 11.086 12.306
hybrid contribution 0.387 0.666 -0.760 1.082
sum -4.946 0.340 10.326 11.454
Atomic orbital electron populations
1.22690 0.82214 1.02360 0.99294 1.88029 1.18421 1.27314 1.95154
1.22595 0.94031 0.85037 0.99383 1.22072 0.93189 0.97749 0.94373
1.61907 1.18197 1.43201 1.01427 1.22339 0.98578 0.93871 0.92502
1.21697 0.99164 0.99650 0.93832 1.18682 0.92386 0.93845 0.90757
0.96381 1.21222 1.42171 0.99804 0.90389 0.92361 1.24955 0.95530
0.94839 0.98822 1.69879 1.46723 1.13020 1.23793 0.86697 0.78589
0.79855 0.83453 1.20870 1.21516 1.20047 1.20601 0.93821 0.96307
0.94887 1.21640 1.00870 0.95816 0.99011 1.21725 0.96227 1.00127
1.00425 1.22137 0.86880 0.97755 0.98804 0.94894 0.94339 0.89962
0.93885 0.93089 0.90671 0.94210 0.96323 0.92804 0.93406 0.89132
0.93295 0.92898 0.95848 0.91890 0.94035 0.95035 0.91736 0.92487
0.96170
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.36 11.01 101.05 1.11 1.47 16
2 O -0.37 -5.75 10.65 -35.23 -0.38 -6.12 16
3 C 0.07 0.92 6.00 37.16 0.22 1.15 16
4 C 0.05 0.82 5.34 -3.82 -0.02 0.80 16
5 N -0.52 -9.65 3.88 -234.68 -0.91 -10.56 16
6 C 0.05 1.09 5.30 -3.83 -0.02 1.07 16
7 C -0.11 -2.50 4.76 -26.65 -0.13 -2.62 16
8 C 0.06 1.51 1.46 -91.65 -0.13 1.38 16
9 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16
10 C -0.50 -13.30 7.12 -34.44 -0.25 -13.54 16
11 H 0.06 1.55 5.70 -52.49 -0.30 1.25 16
12 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16
13 N -0.89 -25.43 11.35 55.43 0.63 -24.80 16
14 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16
15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16
17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
18 C -0.06 -1.16 0.53 -154.42 -0.08 -1.24 16
19 C -0.12 -2.39 7.75 37.16 0.29 -2.10 16
20 C -0.13 -2.47 8.26 37.16 0.31 -2.16 16
21 C 0.07 1.35 4.18 -3.84 -0.02 1.33 16
22 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16
23 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16
24 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16
25 H 0.04 0.49 8.14 -51.94 -0.42 0.07 16
26 H 0.05 0.72 6.23 -51.93 -0.32 0.40 16
27 H 0.07 1.08 7.98 -51.93 -0.41 0.67 16
28 H 0.04 0.56 8.12 -51.93 -0.42 0.14 16
29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16
30 H 0.05 1.01 6.13 -51.93 -0.32 0.69 16
31 H 0.05 1.17 6.58 -51.93 -0.34 0.83 16
32 H 0.09 2.39 6.15 -51.93 -0.32 2.08 16
33 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16
34 H 0.05 1.14 6.49 -51.93 -0.34 0.80 16
35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16
36 H 0.06 1.37 6.01 -51.93 -0.31 1.06 16
37 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16
38 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16
39 H 0.06 1.33 6.78 -51.93 -0.35 0.97 16
40 H 0.06 0.99 8.01 -51.93 -0.42 0.57 16
41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16
LS Contribution 307.69 15.07 4.64 4.64
Total: -1.00 -28.53 307.69 -7.07 -35.60
By element:
Atomic # 1 Polarization: 5.08 SS G_CDS: -7.22 Total: -2.14 kcal
Atomic # 6 Polarization: -14.15 SS G_CDS: 1.19 Total: -12.96 kcal
Atomic # 7 Polarization: -35.08 SS G_CDS: -0.28 Total: -35.36 kcal
Atomic # 8 Polarization: -5.75 SS G_CDS: -0.38 Total: -6.12 kcal
Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal
Total LS contribution 4.64 Total: 4.64 kcal
Total: -28.53 -7.07 -35.60 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259108683.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.025 kcal
(2) G-P(sol) polarization free energy of solvation -28.534 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.559 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.602 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.628 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds