Wall clock time and date at job start Mon Mar 30 2020 03:25:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42908 * 1
3 3 C 1.42907 * 113.99635 * 2 1
4 4 C 1.53002 * 109.46775 * 180.02562 * 3 2 1
5 5 N 1.46901 * 109.47055 * 64.99579 * 4 3 2
6 6 C 1.46847 * 111.00144 * 66.04768 * 5 4 3
7 7 C 1.53044 * 109.51335 * 185.83239 * 6 5 4
8 8 C 1.53117 * 109.27792 * 300.82256 * 7 6 5
9 9 H 1.09004 * 109.52347 * 297.75632 * 8 7 6
10 10 C 1.50697 * 109.52162 * 177.62499 * 8 7 6
11 11 H 1.08001 * 119.99727 * 240.00361 * 10 8 7
12 12 C 1.37873 * 120.00064 * 59.99875 * 10 8 7
13 13 N 1.31512 * 120.00051 * 0.02562 * 12 10 8
14 14 Si 1.86807 * 120.00013 * 179.97438 * 12 10 8
15 15 H 1.48502 * 109.46663 * 90.00253 * 14 12 10
16 16 H 1.48498 * 109.47099 * 210.00354 * 14 12 10
17 17 H 1.48499 * 109.46989 * 330.00503 * 14 12 10
18 18 C 1.53127 * 109.15989 * 57.65607 * 8 7 6
19 19 C 1.52999 * 109.49879 * 62.28470 * 18 8 7
20 20 C 1.52999 * 109.49906 * 182.36450 * 18 8 7
21 21 C 1.46830 * 110.98168 * 190.26186 * 5 4 3
22 22 H 1.09000 * 109.46807 * 300.00259 * 1 2 3
23 23 H 1.08996 * 109.46757 * 60.00217 * 1 2 3
24 24 H 1.08998 * 109.46424 * 180.02562 * 1 2 3
25 25 H 1.08989 * 109.47558 * 59.99746 * 3 2 1
26 26 H 1.09006 * 109.46839 * 299.99238 * 3 2 1
27 27 H 1.08999 * 109.47028 * 304.99424 * 4 3 2
28 28 H 1.08996 * 109.47036 * 184.99216 * 4 3 2
29 29 H 1.09002 * 109.46448 * 65.81961 * 6 5 4
30 30 H 1.08994 * 109.45958 * 305.84326 * 6 5 4
31 31 H 1.09001 * 109.49858 * 60.76701 * 7 6 5
32 32 H 1.09002 * 109.49779 * 180.84687 * 7 6 5
33 33 H 0.97006 * 120.00227 * 179.97438 * 13 12 10
34 34 H 1.09002 * 109.47352 * 60.00285 * 19 18 8
35 35 H 1.09001 * 109.46576 * 179.97438 * 19 18 8
36 36 H 1.08996 * 109.47348 * 299.99625 * 19 18 8
37 37 H 1.08998 * 109.47410 * 60.00497 * 20 18 8
38 38 H 1.09001 * 109.46674 * 179.97438 * 20 18 8
39 39 H 1.08992 * 109.47271 * 299.99740 * 20 18 8
40 40 H 1.08995 * 109.46742 * 54.13906 * 21 5 4
41 41 H 1.09004 * 109.46459 * 294.16736 * 21 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0103 1.3056 0.0000
4 6 3.5355 1.1848 -0.0006
5 7 3.9769 0.5627 -1.2561
6 6 3.6951 1.4352 -2.4032
7 6 4.0329 0.6981 -3.7012
8 6 5.5121 0.3028 -3.6878
9 1 6.1288 1.2007 -3.6465
10 6 5.8371 -0.4743 -4.9374
11 1 6.2092 -1.4855 -4.8630
12 6 5.6592 0.1054 -6.1756
13 7 5.2064 1.3368 -6.2662
14 14 6.0627 -0.8577 -7.7246
15 1 4.8572 -1.5994 -8.1743
16 1 6.4939 0.0800 -8.7922
17 1 7.1574 -1.8194 -7.4384
18 6 5.7893 -0.5652 -2.4572
19 6 4.9641 -1.8508 -2.5427
20 6 7.2776 -0.9159 -2.4042
21 6 5.4005 0.2084 -1.1953
22 1 -0.3633 0.5139 0.8900
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3632 -1.0277 0.0005
25 1 1.6886 1.8465 0.8898
26 1 1.6887 1.8464 -0.8901
27 1 3.8515 0.5684 0.8410
28 1 3.9785 2.1766 0.0888
29 1 4.3010 2.3383 -2.3302
30 1 2.6392 1.7053 -2.4032
31 1 3.4174 -0.1979 -3.7816
32 1 3.8379 1.3512 -4.5519
33 1 5.0816 1.7449 -7.1374
34 1 5.2389 -2.3997 -3.4434
35 1 5.1622 -2.4685 -1.6667
36 1 3.9040 -1.6004 -2.5790
37 1 7.8648 0.0003 -2.3419
38 1 7.4743 -1.5334 -1.5278
39 1 7.5540 -1.4641 -3.3048
40 1 5.5832 -0.4122 -0.3181
41 1 5.9985 1.1173 -1.1279
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259108683.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:25:26
Heat of formation + Delta-G solvation = -70.270239 kcal
Electronic energy + Delta-G solvation = -18891.443003 eV
Core-core repulsion = 16191.289031 eV
Total energy + Delta-G solvation = -2700.153972 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.57410 -38.65494 -36.19961 -34.51156 -32.35811 -30.47445 -28.07751 -27.80006
-27.18769 -26.17669 -24.12802 -22.96707 -21.43172 -19.20756 -18.10212 -17.39411
-17.23637 -16.54652 -16.15691 -15.70141 -15.44798 -15.09990 -14.98654 -14.62159
-14.14687 -13.86816 -13.44435 -13.13119 -12.85636 -12.80327 -12.66131 -12.53377
-12.50944 -12.20837 -12.16977 -12.02757 -11.92962 -11.69380 -11.49925 -11.06244
-10.55941 -10.47202 -10.34792 -10.24881 -9.02078 -8.00141 -6.09437 1.42001
1.43520 1.52299 2.48099 2.97180 3.13262 3.27496 4.06154 4.12842
4.27163 4.29905 4.39980 4.49805 4.51086 4.58053 4.61228 4.66466
4.71045 4.84525 4.88490 4.90115 4.91893 4.96972 5.04526 5.08261
5.18155 5.29767 5.40036 5.53892 5.61537 5.63394 5.72221 5.79012
6.11555 6.13739 6.30810 6.41534 6.48731 6.53621 7.00526 7.56247
9.04677
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.028279 B = 0.006970 C = 0.006377
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 989.879831 B = 4016.139559 C = 4389.765929
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.402 6.402
3 C 0.067 3.933
4 C 0.053 3.947
5 N -0.531 5.531
6 C 0.067 3.933
7 C -0.096 4.096
8 C 0.062 3.938
9 H -0.018 1.018
10 C -0.506 4.506
11 H 0.057 0.943
12 C 0.008 3.992
13 N -0.922 5.922
14 Si 0.944 3.056
15 H -0.280 1.280
16 H -0.288 1.288
17 H -0.269 1.269
18 C -0.058 4.058
19 C -0.105 4.105
20 C -0.122 4.122
21 C 0.076 3.924
22 H 0.055 0.945
23 H 0.037 0.963
24 H 0.090 0.910
25 H 0.074 0.926
26 H 0.042 0.958
27 H 0.088 0.912
28 H 0.053 0.947
29 H 0.011 0.989
30 H 0.067 0.933
31 H 0.033 0.967
32 H 0.057 0.943
33 H 0.256 0.744
34 H 0.035 0.965
35 H 0.048 0.952
36 H 0.047 0.953
37 H 0.038 0.962
38 H 0.062 0.938
39 H 0.046 0.954
40 H 0.082 0.918
41 H 0.017 0.983
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.384 -0.562 13.093 14.168
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.321 6.321
3 C -0.010 4.010
4 C -0.075 4.075
5 N -0.256 5.256
6 C -0.060 4.060
7 C -0.134 4.134
8 C 0.044 3.956
9 H 0.000 1.000
10 C -0.544 4.544
11 H 0.075 0.925
12 C -0.189 4.189
13 N -0.563 5.563
14 Si 0.771 3.229
15 H -0.206 1.206
16 H -0.214 1.214
17 H -0.193 1.193
18 C -0.059 4.059
19 C -0.162 4.162
20 C -0.180 4.180
21 C -0.052 4.052
22 H 0.073 0.927
23 H 0.056 0.944
24 H 0.108 0.892
25 H 0.092 0.908
26 H 0.061 0.939
27 H 0.106 0.894
28 H 0.071 0.929
29 H 0.029 0.971
30 H 0.085 0.915
31 H 0.051 0.949
32 H 0.075 0.925
33 H 0.065 0.935
34 H 0.054 0.946
35 H 0.067 0.933
36 H 0.066 0.934
37 H 0.057 0.943
38 H 0.081 0.919
39 H 0.065 0.935
40 H 0.100 0.900
41 H 0.035 0.965
Dipole moment (debyes) X Y Z Total
from point charges -5.578 -1.030 12.906 14.097
hybrid contribution 0.436 0.882 -1.290 1.623
sum -5.142 -0.148 11.615 12.703
Atomic orbital electron populations
1.22852 0.80476 1.03315 1.00308 1.87972 1.20460 1.28242 1.95395
1.22628 0.93084 0.84814 1.00441 1.22204 0.94227 0.98426 0.92643
1.61862 1.18007 1.43335 1.02348 1.22072 0.99177 0.93162 0.91616
1.21449 0.98490 0.98564 0.94943 1.18612 0.92051 0.92825 0.92110
1.00040 1.21540 1.41494 0.99831 0.91524 0.92532 1.25677 0.95766
0.95713 1.01720 1.70025 1.47766 1.14319 1.24179 0.85769 0.78461
0.78645 0.80050 1.20601 1.21429 1.19309 1.20578 0.94994 0.96021
0.94272 1.21504 0.99686 0.95722 0.99326 1.21655 0.95031 1.00322
1.01001 1.22075 0.87105 0.97704 0.98267 0.92688 0.94447 0.89168
0.90821 0.93944 0.89403 0.92891 0.97080 0.91488 0.94865 0.92468
0.93508 0.94567 0.93314 0.93410 0.94296 0.91857 0.93524 0.90010
0.96487
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.56 11.01 113.37 1.25 1.81 16
2 O -0.40 -11.52 10.65 -148.98 -1.59 -13.11 16
3 C 0.07 1.68 6.00 71.98 0.43 2.11 16
4 C 0.05 1.44 5.34 86.30 0.46 1.90 16
5 N -0.53 -18.73 3.88 -896.40 -3.48 -22.21 16
6 C 0.07 2.69 5.30 86.33 0.46 3.15 16
7 C -0.10 -4.69 4.76 30.65 0.15 -4.54 16
8 C 0.06 3.14 1.46 -11.46 -0.02 3.12 16
9 H -0.02 -1.05 8.14 -2.38 -0.02 -1.07 16
10 C -0.51 -27.60 7.12 25.60 0.18 -27.42 16
11 H 0.06 3.05 5.70 -2.91 -0.02 3.03 16
12 C 0.01 0.47 5.30 84.65 0.45 0.92 16
13 N -0.92 -54.07 11.35 21.45 0.24 -53.82 16
14 Si 0.94 44.47 29.54 68.60 2.03 46.49 16
15 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16
16 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16
17 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16
18 C -0.06 -2.38 0.53 -52.13 -0.03 -2.41 16
19 C -0.11 -4.21 7.75 71.98 0.56 -3.65 16
20 C -0.12 -4.59 8.26 71.98 0.59 -3.99 16
21 C 0.08 2.71 4.18 86.33 0.36 3.07 16
22 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16
23 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16
24 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16
25 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16
26 H 0.04 1.12 6.23 -2.38 -0.01 1.11 16
27 H 0.09 2.21 7.98 -2.39 -0.02 2.19 16
28 H 0.05 1.33 8.12 -2.39 -0.02 1.31 16
29 H 0.01 0.45 8.14 -2.39 -0.02 0.44 16
30 H 0.07 2.48 6.13 -2.39 -0.01 2.46 16
31 H 0.03 1.67 6.58 -2.39 -0.02 1.66 16
32 H 0.06 3.16 6.15 -2.39 -0.01 3.14 16
33 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16
34 H 0.04 1.53 6.49 -2.39 -0.02 1.52 16
35 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16
36 H 0.05 2.04 6.01 -2.39 -0.01 2.03 16
37 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16
38 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16
39 H 0.05 1.89 6.78 -2.39 -0.02 1.87 16
40 H 0.08 2.53 8.01 -2.39 -0.02 2.51 16
41 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16
Total: -1.00 -62.07 307.69 3.02 -59.05
By element:
Atomic # 1 Polarization: 8.56 SS G_CDS: 0.98 Total: 9.54 kcal
Atomic # 6 Polarization: -30.79 SS G_CDS: 4.85 Total: -25.94 kcal
Atomic # 7 Polarization: -72.79 SS G_CDS: -3.24 Total: -76.03 kcal
Atomic # 8 Polarization: -11.52 SS G_CDS: -1.59 Total: -13.11 kcal
Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal
Total: -62.07 3.02 -59.05 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259108683.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.221 kcal
(2) G-P(sol) polarization free energy of solvation -62.073 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.294 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.049 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.270 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds