Wall clock time and date at job start Mon Mar 30 2020 03:23:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.42903 * 114.00033 * 2 1
4 4 C 1.52999 * 109.47002 * 179.97438 * 3 2 1
5 5 N 1.46898 * 109.47461 * 62.29324 * 4 3 2
6 6 C 1.46845 * 110.99908 * 52.14061 * 5 4 3
7 7 C 1.53038 * 109.52668 * 185.84330 * 6 5 4
8 8 C 1.53127 * 109.27405 * 300.82346 * 7 6 5
9 9 C 1.52996 * 109.51938 * 297.74328 * 8 7 6
10 10 C 1.53005 * 109.51941 * 177.55620 * 8 7 6
11 11 C 1.53113 * 109.16353 * 57.65197 * 8 7 6
12 12 H 1.09001 * 109.50133 * 62.28305 * 11 8 7
13 13 C 1.50695 * 109.50412 * 182.40249 * 11 8 7
14 14 H 1.07996 * 120.00219 * 0.02562 * 13 11 8
15 15 C 1.37874 * 120.00185 * 179.97438 * 13 11 8
16 16 N 1.31521 * 119.99764 * 0.02562 * 15 13 11
17 17 Si 1.86796 * 120.00338 * 179.97438 * 15 13 11
18 18 H 1.48505 * 109.47045 * 90.00349 * 17 15 13
19 19 H 1.48504 * 109.47476 * 210.00145 * 17 15 13
20 20 H 1.48502 * 109.47318 * 330.00455 * 17 15 13
21 21 C 1.46842 * 111.00216 * 176.35116 * 5 4 3
22 22 H 1.09002 * 109.46662 * 60.00503 * 1 2 3
23 23 H 1.08997 * 109.47325 * 180.02562 * 1 2 3
24 24 H 1.08992 * 109.47283 * 300.00713 * 1 2 3
25 25 H 1.09000 * 109.47164 * 59.99576 * 3 2 1
26 26 H 1.08997 * 109.47124 * 299.99319 * 3 2 1
27 27 H 1.08995 * 109.47375 * 302.29303 * 4 3 2
28 28 H 1.09002 * 109.46869 * 182.29111 * 4 3 2
29 29 H 1.09002 * 109.46776 * 305.85610 * 6 5 4
30 30 H 1.09004 * 109.46558 * 65.82655 * 6 5 4
31 31 H 1.08997 * 109.50880 * 180.88057 * 7 6 5
32 32 H 1.09001 * 109.50294 * 60.75562 * 7 6 5
33 33 H 1.09008 * 109.46665 * 179.68740 * 9 8 7
34 34 H 1.09001 * 109.47365 * 299.68527 * 9 8 7
35 35 H 1.08999 * 109.46985 * 59.68893 * 9 8 7
36 36 H 1.08992 * 109.47173 * 300.31497 * 10 8 7
37 37 H 1.09001 * 109.47231 * 60.31822 * 10 8 7
38 38 H 1.08997 * 109.46548 * 180.31491 * 10 8 7
39 39 H 0.97005 * 119.99676 * 179.97438 * 16 15 13
40 40 H 1.09004 * 109.46052 * 54.14553 * 21 5 4
41 41 H 1.08999 * 109.45830 * 294.17169 * 21 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1846 0.0006
5 7 3.9733 0.5038 -1.2252
6 6 3.4051 1.1477 -2.4164
7 6 3.7617 0.3294 -3.6594
8 6 5.2851 0.2369 -3.7838
9 6 5.8690 1.6392 -3.9671
10 6 5.6477 -0.6311 -4.9905
11 6 5.8561 -0.3928 -2.5104
12 1 5.4699 -1.4062 -2.4009
13 6 7.3598 -0.4335 -2.5998
14 1 7.8593 -0.0486 -3.4765
15 6 8.0982 -0.9613 -1.5619
16 7 7.4900 -1.4296 -0.4939
17 14 9.9621 -1.0124 -1.6730
18 1 10.5262 0.2401 -1.1086
19 1 10.4722 -2.1757 -0.9037
20 1 10.3699 -1.1421 -3.0950
21 6 5.4386 0.4465 -1.3006
22 1 -0.3633 0.5138 -0.8901
23 1 -0.3634 -1.0276 0.0005
24 1 -0.3633 0.5139 0.8898
25 1 1.6885 1.8464 0.8899
26 1 1.6887 1.8463 -0.8900
27 1 3.8539 0.6088 0.8695
28 1 3.9787 2.1796 0.0417
29 1 2.3210 1.2033 -2.3170
30 1 3.8127 2.1539 -2.5147
31 1 3.3531 0.8159 -4.5451
32 1 3.3426 -0.6727 -3.5680
33 1 6.9539 1.5729 -4.0499
34 1 5.4620 2.0867 -4.8738
35 1 5.6073 2.2568 -3.1079
36 1 5.2285 -1.6286 -4.8596
37 1 5.2409 -0.1820 -5.8966
38 1 6.7322 -0.7009 -5.0749
39 1 8.0094 -1.8012 0.2362
40 1 5.8316 -0.0072 -0.3908
41 1 5.8367 1.4559 -1.4042
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259243084.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:23:55
Heat of formation + Delta-G solvation = -49.985907 kcal
Electronic energy + Delta-G solvation = -18954.593237 eV
Core-core repulsion = 16255.318859 eV
Total energy + Delta-G solvation = -2699.274377 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.02272 -37.48309 -34.63611 -32.74991 -29.74772 -29.54725 -26.82432 -26.40399
-25.76057 -24.40889 -22.56862 -21.14404 -20.02681 -17.39960 -16.16770 -16.10398
-15.93688 -14.86418 -14.66871 -14.25441 -13.86943 -13.71441 -13.24867 -12.99146
-12.81558 -12.37068 -11.84656 -11.57206 -11.32761 -11.26800 -11.06297 -10.97684
-10.81574 -10.75424 -10.50595 -10.35398 -10.23770 -10.03296 -9.77355 -9.44911
-9.35600 -8.70781 -8.53603 -8.25931 -7.22023 -5.90959 -3.95994 3.33649
3.41231 3.43730 4.05596 4.48181 4.78348 5.25532 5.36419 5.41502
5.47745 5.55934 5.57411 5.71724 5.73307 5.76570 5.89388 6.03085
6.13543 6.22080 6.31760 6.37096 6.44095 6.49989 6.63595 6.74850
6.79372 6.87959 6.94048 7.10924 7.24686 7.28760 7.37031 7.45403
7.77204 7.93820 8.07162 8.19405 8.29273 8.60860 9.07778 9.67487
11.14652
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.025355 B = 0.007689 C = 0.006490
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1104.048186 B = 3640.536110 C = 4313.571007
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.367 6.367
3 C 0.062 3.938
4 C 0.058 3.942
5 N -0.528 5.528
6 C 0.057 3.943
7 C -0.102 4.102
8 C -0.062 4.062
9 C -0.129 4.129
10 C -0.125 4.125
11 C 0.069 3.931
12 H 0.034 0.966
13 C -0.505 4.505
14 H 0.059 0.941
15 C 0.060 3.940
16 N -0.887 5.887
17 Si 0.885 3.115
18 H -0.283 1.283
19 H -0.288 1.288
20 H -0.275 1.275
21 C 0.063 3.937
22 H 0.035 0.965
23 H 0.082 0.918
24 H 0.033 0.967
25 H 0.043 0.957
26 H 0.047 0.953
27 H 0.080 0.920
28 H 0.036 0.964
29 H 0.057 0.943
30 H 0.020 0.980
31 H 0.046 0.954
32 H 0.062 0.938
33 H 0.061 0.939
34 H 0.027 0.973
35 H 0.045 0.955
36 H 0.044 0.956
37 H 0.028 0.972
38 H 0.060 0.940
39 H 0.259 0.741
40 H 0.102 0.898
41 H 0.007 0.993
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.191 5.805 -1.296 11.800
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.285 6.285
3 C -0.015 4.015
4 C -0.070 4.070
5 N -0.253 5.253
6 C -0.071 4.071
7 C -0.140 4.140
8 C -0.062 4.062
9 C -0.186 4.186
10 C -0.183 4.183
11 C 0.051 3.949
12 H 0.052 0.948
13 C -0.544 4.544
14 H 0.077 0.923
15 C -0.141 4.141
16 N -0.526 5.526
17 Si 0.714 3.286
18 H -0.210 1.210
19 H -0.214 1.214
20 H -0.200 1.200
21 C -0.063 4.063
22 H 0.053 0.947
23 H 0.101 0.899
24 H 0.052 0.948
25 H 0.061 0.939
26 H 0.066 0.934
27 H 0.098 0.902
28 H 0.054 0.946
29 H 0.076 0.924
30 H 0.039 0.961
31 H 0.065 0.935
32 H 0.081 0.919
33 H 0.080 0.920
34 H 0.046 0.954
35 H 0.064 0.936
36 H 0.063 0.937
37 H 0.048 0.952
38 H 0.079 0.921
39 H 0.069 0.931
40 H 0.120 0.880
41 H 0.025 0.975
Dipole moment (debyes) X Y Z Total
from point charges -10.203 5.065 -1.103 11.444
hybrid contribution 1.089 1.116 0.079 1.562
sum -9.114 6.182 -1.024 11.060
Atomic orbital electron populations
1.22692 0.82532 1.02335 0.99109 1.88102 1.18101 1.27222 1.95082
1.22702 0.94659 0.85023 0.99092 1.22054 0.91943 0.97178 0.95859
1.62073 1.12519 1.51215 0.99533 1.22082 0.98077 0.95249 0.91726
1.21618 0.97102 0.99999 0.95261 1.20635 0.92755 0.95010 0.97832
1.21843 1.01525 0.96538 0.98729 1.21713 1.01860 0.98813 0.95890
1.18644 0.94253 0.94732 0.87319 0.94791 1.21210 0.91200 1.39326
1.02652 0.92315 1.24993 0.97970 0.95420 0.95692 1.69896 1.34815
1.40990 1.06919 0.86701 0.86521 0.77398 0.77993 1.20956 1.21374
1.20021 1.22479 0.81688 0.97532 1.04624 0.94669 0.89950 0.94849
0.93935 0.93448 0.90158 0.94601 0.92448 0.96149 0.93550 0.91894
0.92045 0.95409 0.93633 0.93655 0.95245 0.92075 0.93122 0.87961
0.97497
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.36 11.01 101.05 1.11 1.47 16
2 O -0.37 -6.10 10.61 -35.23 -0.37 -6.48 16
3 C 0.06 0.93 5.57 37.16 0.21 1.13 16
4 C 0.06 1.04 5.52 -3.83 -0.02 1.02 16
5 N -0.53 -11.01 4.67 -234.67 -1.10 -12.10 16
6 C 0.06 1.04 4.80 -3.83 -0.02 1.02 16
7 C -0.10 -1.91 4.88 -26.65 -0.13 -2.04 16
8 C -0.06 -1.29 0.53 -154.38 -0.08 -1.37 16
9 C -0.13 -2.53 7.61 37.16 0.28 -2.24 16
10 C -0.13 -2.45 8.27 37.16 0.31 -2.14 16
11 C 0.07 1.71 1.55 -91.69 -0.14 1.57 16
12 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16
13 C -0.51 -13.42 7.12 -34.44 -0.25 -13.67 16
14 H 0.06 1.54 5.70 -52.49 -0.30 1.24 16
15 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16
16 N -0.89 -25.29 11.34 55.43 0.63 -24.66 16
17 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16
18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
19 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16
20 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16
21 C 0.06 1.51 4.26 -3.83 -0.02 1.49 16
22 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16
23 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16
24 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16
25 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16
26 H 0.05 0.66 6.05 -51.93 -0.31 0.35 16
27 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16
28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16
29 H 0.06 0.96 5.79 -51.93 -0.30 0.66 16
30 H 0.02 0.37 6.51 -51.93 -0.34 0.03 16
31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16
32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16
33 H 0.06 1.27 6.49 -51.92 -0.34 0.93 16
34 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16
35 H 0.04 0.90 4.92 -51.93 -0.26 0.64 16
36 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16
37 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16
38 H 0.06 1.26 6.79 -51.93 -0.35 0.90 16
39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16
40 H 0.10 2.77 6.09 -51.93 -0.32 2.45 16
41 H 0.01 0.17 6.51 -51.93 -0.34 -0.17 16
LS Contribution 304.77 15.07 4.59 4.59
Total: -1.00 -28.67 304.77 -7.17 -35.84
By element:
Atomic # 1 Polarization: 5.90 SS G_CDS: -7.06 Total: -1.16 kcal
Atomic # 6 Polarization: -13.36 SS G_CDS: 1.16 Total: -12.20 kcal
Atomic # 7 Polarization: -36.30 SS G_CDS: -0.47 Total: -36.76 kcal
Atomic # 8 Polarization: -6.10 SS G_CDS: -0.37 Total: -6.48 kcal
Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal
Total LS contribution 4.59 Total: 4.59 kcal
Total: -28.67 -7.17 -35.84 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259243084.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.147 kcal
(2) G-P(sol) polarization free energy of solvation -28.671 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.818 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.839 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.986 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds