Wall clock time and date at job start Mon Mar 30 2020 03:23:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.42903 * 114.00033 * 2 1
4 4 C 1.52999 * 109.47002 * 179.97438 * 3 2 1
5 5 N 1.46898 * 109.47461 * 62.29324 * 4 3 2
6 6 C 1.46845 * 110.99908 * 52.14061 * 5 4 3
7 7 C 1.53038 * 109.52668 * 185.84330 * 6 5 4
8 8 C 1.53127 * 109.27405 * 300.82346 * 7 6 5
9 9 C 1.52996 * 109.51938 * 297.74328 * 8 7 6
10 10 C 1.53005 * 109.51941 * 177.55620 * 8 7 6
11 11 C 1.53113 * 109.16353 * 57.65197 * 8 7 6
12 12 H 1.09001 * 109.50133 * 62.28305 * 11 8 7
13 13 C 1.50695 * 109.50412 * 182.40249 * 11 8 7
14 14 H 1.07996 * 120.00219 * 0.02562 * 13 11 8
15 15 C 1.37874 * 120.00185 * 179.97438 * 13 11 8
16 16 N 1.31521 * 119.99764 * 0.02562 * 15 13 11
17 17 Si 1.86796 * 120.00338 * 179.97438 * 15 13 11
18 18 H 1.48505 * 109.47045 * 90.00349 * 17 15 13
19 19 H 1.48504 * 109.47476 * 210.00145 * 17 15 13
20 20 H 1.48502 * 109.47318 * 330.00455 * 17 15 13
21 21 C 1.46842 * 111.00216 * 176.35116 * 5 4 3
22 22 H 1.09002 * 109.46662 * 60.00503 * 1 2 3
23 23 H 1.08997 * 109.47325 * 180.02562 * 1 2 3
24 24 H 1.08992 * 109.47283 * 300.00713 * 1 2 3
25 25 H 1.09000 * 109.47164 * 59.99576 * 3 2 1
26 26 H 1.08997 * 109.47124 * 299.99319 * 3 2 1
27 27 H 1.08995 * 109.47375 * 302.29303 * 4 3 2
28 28 H 1.09002 * 109.46869 * 182.29111 * 4 3 2
29 29 H 1.09002 * 109.46776 * 305.85610 * 6 5 4
30 30 H 1.09004 * 109.46558 * 65.82655 * 6 5 4
31 31 H 1.08997 * 109.50880 * 180.88057 * 7 6 5
32 32 H 1.09001 * 109.50294 * 60.75562 * 7 6 5
33 33 H 1.09008 * 109.46665 * 179.68740 * 9 8 7
34 34 H 1.09001 * 109.47365 * 299.68527 * 9 8 7
35 35 H 1.08999 * 109.46985 * 59.68893 * 9 8 7
36 36 H 1.08992 * 109.47173 * 300.31497 * 10 8 7
37 37 H 1.09001 * 109.47231 * 60.31822 * 10 8 7
38 38 H 1.08997 * 109.46548 * 180.31491 * 10 8 7
39 39 H 0.97005 * 119.99676 * 179.97438 * 16 15 13
40 40 H 1.09004 * 109.46052 * 54.14553 * 21 5 4
41 41 H 1.08999 * 109.45830 * 294.17169 * 21 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1846 0.0006
5 7 3.9733 0.5038 -1.2252
6 6 3.4051 1.1477 -2.4164
7 6 3.7617 0.3294 -3.6594
8 6 5.2851 0.2369 -3.7838
9 6 5.8690 1.6392 -3.9671
10 6 5.6477 -0.6311 -4.9905
11 6 5.8561 -0.3928 -2.5104
12 1 5.4699 -1.4062 -2.4009
13 6 7.3598 -0.4335 -2.5998
14 1 7.8593 -0.0486 -3.4765
15 6 8.0982 -0.9613 -1.5619
16 7 7.4900 -1.4296 -0.4939
17 14 9.9621 -1.0124 -1.6730
18 1 10.5262 0.2401 -1.1086
19 1 10.4722 -2.1757 -0.9037
20 1 10.3699 -1.1421 -3.0950
21 6 5.4386 0.4465 -1.3006
22 1 -0.3633 0.5138 -0.8901
23 1 -0.3634 -1.0276 0.0005
24 1 -0.3633 0.5139 0.8898
25 1 1.6885 1.8464 0.8899
26 1 1.6887 1.8463 -0.8900
27 1 3.8539 0.6088 0.8695
28 1 3.9787 2.1796 0.0417
29 1 2.3210 1.2033 -2.3170
30 1 3.8127 2.1539 -2.5147
31 1 3.3531 0.8159 -4.5451
32 1 3.3426 -0.6727 -3.5680
33 1 6.9539 1.5729 -4.0499
34 1 5.4620 2.0867 -4.8738
35 1 5.6073 2.2568 -3.1079
36 1 5.2285 -1.6286 -4.8596
37 1 5.2409 -0.1820 -5.8966
38 1 6.7322 -0.7009 -5.0749
39 1 8.0094 -1.8012 0.2362
40 1 5.8316 -0.0072 -0.3908
41 1 5.8367 1.4559 -1.4042
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259243084.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:23:55
Heat of formation + Delta-G solvation = -68.733513 kcal
Electronic energy + Delta-G solvation = -18955.406194 eV
Core-core repulsion = 16255.318859 eV
Total energy + Delta-G solvation = -2700.087334 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.63524 -38.72447 -36.18412 -34.74897 -31.35938 -31.11806 -28.33843 -27.98190
-27.03568 -26.17526 -24.03846 -22.93636 -21.56033 -19.11883 -18.06120 -17.36280
-17.26135 -16.55983 -16.12522 -15.73190 -15.37232 -15.35521 -14.77092 -14.65473
-14.40589 -13.96078 -13.36285 -13.01112 -12.89319 -12.73669 -12.64605 -12.55778
-12.46721 -12.30958 -12.20235 -12.02414 -11.89896 -11.72709 -11.50792 -11.18448
-10.57796 -10.45584 -10.38010 -10.28843 -8.84747 -8.00417 -6.12146 1.41885
1.43529 1.52683 2.47081 2.95892 3.17474 3.39914 4.03027 4.14030
4.18822 4.27402 4.30566 4.44511 4.55244 4.59828 4.61142 4.65332
4.68808 4.80479 4.88923 4.90420 4.97007 4.99631 5.02601 5.10367
5.17646 5.25190 5.31380 5.33878 5.58259 5.63376 5.68269 5.70993
6.05641 6.16047 6.30953 6.38349 6.60616 6.65803 7.00626 7.54625
9.03925
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.025355 B = 0.007689 C = 0.006490
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1104.048186 B = 3640.536110 C = 4313.571007
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.406 6.406
3 C 0.069 3.931
4 C 0.054 3.946
5 N -0.547 5.547
6 C 0.059 3.941
7 C -0.099 4.099
8 C -0.065 4.065
9 C -0.121 4.121
10 C -0.121 4.121
11 C 0.070 3.930
12 H -0.015 1.015
13 C -0.511 4.511
14 H 0.060 0.940
15 C 0.009 3.991
16 N -0.918 5.918
17 Si 0.946 3.054
18 H -0.278 1.278
19 H -0.289 1.289
20 H -0.267 1.267
21 C 0.081 3.919
22 H 0.049 0.951
23 H 0.087 0.913
24 H 0.052 0.948
25 H 0.070 0.930
26 H 0.063 0.937
27 H 0.057 0.943
28 H 0.047 0.953
29 H 0.081 0.919
30 H 0.029 0.971
31 H 0.081 0.919
32 H 0.047 0.953
33 H 0.043 0.957
34 H 0.060 0.940
35 H 0.039 0.961
36 H 0.035 0.965
37 H 0.063 0.937
38 H 0.043 0.957
39 H 0.256 0.744
40 H 0.062 0.938
41 H 0.000 1.000
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.433 7.471 -2.594 13.902
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.326 6.326
3 C -0.007 4.007
4 C -0.074 4.074
5 N -0.272 5.272
6 C -0.069 4.069
7 C -0.136 4.136
8 C -0.065 4.065
9 C -0.178 4.178
10 C -0.178 4.178
11 C 0.051 3.949
12 H 0.003 0.997
13 C -0.550 4.550
14 H 0.078 0.922
15 C -0.189 4.189
16 N -0.559 5.559
17 Si 0.773 3.227
18 H -0.204 1.204
19 H -0.215 1.215
20 H -0.192 1.192
21 C -0.046 4.046
22 H 0.067 0.933
23 H 0.106 0.894
24 H 0.070 0.930
25 H 0.088 0.912
26 H 0.081 0.919
27 H 0.076 0.924
28 H 0.065 0.935
29 H 0.099 0.901
30 H 0.047 0.953
31 H 0.099 0.901
32 H 0.066 0.934
33 H 0.062 0.938
34 H 0.079 0.921
35 H 0.058 0.942
36 H 0.054 0.946
37 H 0.082 0.918
38 H 0.062 0.938
39 H 0.065 0.935
40 H 0.081 0.919
41 H 0.018 0.982
Dipole moment (debyes) X Y Z Total
from point charges -11.459 6.742 -2.413 13.513
hybrid contribution 1.412 0.570 0.496 1.602
sum -10.047 7.312 -1.917 12.573
Atomic orbital electron populations
1.22886 0.80150 1.03335 1.00687 1.88044 1.20811 1.28273 1.95436
1.22651 0.92023 0.84920 1.01107 1.22110 0.94656 0.96884 0.93710
1.61953 1.10316 1.53141 1.01793 1.22145 0.99244 0.95162 0.90308
1.21600 0.95309 0.99744 0.96966 1.20615 0.94307 0.95635 0.95954
1.21743 1.00432 0.95585 1.00063 1.21657 1.00825 0.98498 0.96861
1.18540 0.93451 0.92686 0.90218 0.99664 1.21534 0.92523 1.38554
1.02387 0.92163 1.25746 1.02188 0.95440 0.95520 1.70069 1.36200
1.42041 1.07558 0.85733 0.81536 0.77276 0.78158 1.20414 1.21538
1.19196 1.22021 0.84045 0.96244 1.02296 0.93271 0.89407 0.92960
0.91192 0.91932 0.92402 0.93514 0.90131 0.95297 0.90081 0.93428
0.93783 0.92103 0.94177 0.94608 0.91841 0.93777 0.93456 0.91927
0.98234
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.55 11.01 113.37 1.25 1.80 16
2 O -0.41 -12.92 10.61 -148.98 -1.58 -14.50 16
3 C 0.07 1.92 5.57 71.98 0.40 2.32 16
4 C 0.05 1.93 5.52 86.30 0.48 2.40 16
5 N -0.55 -22.85 4.67 -896.36 -4.18 -27.03 16
6 C 0.06 2.03 4.80 86.33 0.41 2.45 16
7 C -0.10 -3.47 4.88 30.65 0.15 -3.32 16
8 C -0.06 -2.63 0.53 -52.10 -0.03 -2.65 16
9 C -0.12 -4.49 7.61 71.98 0.55 -3.94 16
10 C -0.12 -4.58 8.27 71.98 0.60 -3.99 16
11 C 0.07 3.56 1.55 -11.49 -0.02 3.54 16
12 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16
13 C -0.51 -27.84 7.12 25.60 0.18 -27.66 16
14 H 0.06 3.20 5.70 -2.91 -0.02 3.18 16
15 C 0.01 0.50 5.30 84.65 0.45 0.95 16
16 N -0.92 -54.62 11.34 21.45 0.24 -54.38 16
17 Si 0.95 44.28 29.54 68.60 2.03 46.31 16
18 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16
19 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16
20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16
21 C 0.08 4.02 4.26 86.33 0.37 4.39 16
22 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16
23 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16
24 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16
25 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16
26 H 0.06 1.53 6.05 -2.39 -0.01 1.52 16
27 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16
28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16
29 H 0.08 2.43 5.79 -2.39 -0.01 2.42 16
30 H 0.03 0.97 6.51 -2.38 -0.02 0.95 16
31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16
32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16
33 H 0.04 1.76 6.49 -2.38 -0.02 1.75 16
34 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16
35 H 0.04 1.51 4.92 -2.39 -0.01 1.50 16
36 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16
37 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16
38 H 0.04 1.78 6.79 -2.39 -0.02 1.77 16
39 H 0.26 14.64 8.31 -92.70 -0.77 13.87 16
40 H 0.06 3.58 6.09 -2.38 -0.01 3.57 16
41 H 0.00 -0.02 6.51 -2.39 -0.02 -0.04 16
Total: -1.00 -64.19 304.77 2.27 -61.91
By element:
Atomic # 1 Polarization: 10.41 SS G_CDS: 0.98 Total: 11.40 kcal
Atomic # 6 Polarization: -28.49 SS G_CDS: 4.79 Total: -23.71 kcal
Atomic # 7 Polarization: -77.47 SS G_CDS: -3.94 Total: -81.41 kcal
Atomic # 8 Polarization: -12.92 SS G_CDS: -1.58 Total: -14.50 kcal
Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal
Total: -64.19 2.27 -61.91 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259243084.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.821 kcal
(2) G-P(sol) polarization free energy of solvation -64.187 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.008 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.913 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.734 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds