Wall clock time and date at job start Mon Mar 30 2020 03:24:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46895 * 1
3 3 C 1.47634 * 111.00238 * 2 1
4 4 C 1.50816 * 108.04109 * 150.33008 * 3 2 1
5 5 C 1.53809 * 111.61988 * 95.06123 * 4 3 2
6 6 C 1.53004 * 108.97706 * 198.40084 * 5 4 3
7 7 C 1.52997 * 108.91640 * 79.64000 * 5 4 3
8 8 C 1.54169 * 111.97382 * 319.04150 * 5 4 3
9 9 H 1.08997 * 108.85548 * 79.18794 * 8 5 4
10 10 C 1.53004 * 108.85604 * 197.68054 * 8 5 4
11 11 C 1.50701 * 109.47211 * 185.00293 * 10 8 5
12 12 H 1.08002 * 119.99761 * 359.97438 * 11 10 8
13 13 C 1.37871 * 119.99694 * 180.27574 * 11 10 8
14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 10
15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 10
16 16 H 1.48504 * 109.47209 * 89.99886 * 15 13 11
17 17 H 1.48501 * 109.47358 * 209.99377 * 15 13 11
18 18 H 1.48496 * 109.47341 * 329.99989 * 15 13 11
19 19 C 1.50757 * 112.61132 * 318.48372 * 8 5 4
20 20 H 1.09005 * 109.54416 * 333.14589 * 19 8 5
21 21 O 1.42893 * 109.54616 * 212.87808 * 19 8 5
22 22 C 1.39779 * 111.00250 * 231.09597 * 2 1 3
23 23 H 1.09003 * 109.47255 * 56.04597 * 1 2 3
24 24 H 1.08996 * 109.46971 * 176.04618 * 1 2 3
25 25 H 1.09001 * 109.47028 * 296.04621 * 1 2 3
26 26 H 1.09004 * 109.74768 * 30.69252 * 3 2 1
27 27 H 1.09001 * 109.74995 * 269.97218 * 3 2 1
28 28 H 1.08998 * 109.04702 * 334.50759 * 4 3 2
29 29 H 1.08996 * 108.99221 * 215.57587 * 4 3 2
30 30 H 1.09004 * 109.46710 * 182.46592 * 6 5 4
31 31 H 1.08995 * 109.47062 * 302.45748 * 6 5 4
32 32 H 1.08992 * 109.47150 * 62.46367 * 6 5 4
33 33 H 1.09001 * 109.46929 * 297.57857 * 7 5 4
34 34 H 1.08998 * 109.47036 * 57.57603 * 7 5 4
35 35 H 1.09001 * 109.47351 * 177.57910 * 7 5 4
36 36 H 1.09000 * 109.47211 * 64.99320 * 10 8 5
37 37 H 1.09007 * 109.46376 * 304.99862 * 10 8 5
38 38 H 0.96995 * 120.00207 * 179.97438 * 14 13 11
39 39 H 0.96705 * 114.00165 * 179.97438 * 21 19 8
40 40 H 1.09002 * 109.01856 * 309.72834 * 22 2 1
41 41 H 1.09006 * 109.01848 * 68.62106 * 22 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4689 0.0000 0.0000
3 6 1.9981 1.3783 0.0000
4 6 3.3287 1.3677 0.7098
5 6 4.4982 1.2352 -0.2803
6 6 5.7436 0.7741 0.4795
7 6 4.7757 2.6035 -0.9061
8 6 4.1921 0.2234 -1.4025
9 1 3.5549 0.7033 -2.1453
10 6 5.5062 -0.1870 -2.0702
11 6 5.2136 -1.0805 -3.2480
12 1 4.1925 -1.3310 -3.4953
13 6 6.2497 -1.5832 -4.0060
14 7 7.4931 -1.2785 -3.7047
15 14 5.8874 -2.6971 -5.4612
16 1 5.7206 -1.8735 -6.6856
17 1 7.0148 -3.6447 -5.6520
18 1 4.6390 -3.4585 -5.2030
19 6 3.4971 -1.0138 -0.8937
20 1 3.7617 -1.1772 0.1510
21 8 3.8990 -2.1424 -1.6725
22 6 1.9699 -0.8195 -1.0155
23 1 -0.3634 0.5740 -0.8525
24 1 -0.3633 -1.0252 -0.0709
25 1 -0.3633 0.4513 0.9233
26 1 1.3065 2.0383 0.5237
27 1 2.1306 1.7219 -1.0259
28 1 3.3543 0.5287 1.4051
29 1 3.4397 2.2966 1.2693
30 1 6.5886 0.7196 -0.2071
31 1 5.9674 1.4843 1.2753
32 1 5.5622 -0.2101 0.9112
33 1 3.9005 2.9306 -1.4674
34 1 4.9933 3.3256 -0.1191
35 1 5.6311 2.5292 -1.5776
36 1 6.1265 -0.7235 -1.3523
37 1 6.0336 0.7036 -2.4120
38 1 8.2220 -1.6325 -4.2378
39 1 3.4895 -2.9748 -1.3993
40 1 1.4823 -1.7928 -0.9595
41 1 1.7465 -0.3656 -1.9810
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260730020.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:24:05
Heat of formation + Delta-G solvation = -68.052513 kcal
Electronic energy + Delta-G solvation = -19401.875734 eV
Core-core repulsion = 16701.817930 eV
Total energy + Delta-G solvation = -2700.057804 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-41.24846 -37.63904 -37.11008 -34.76254 -32.36588 -30.47890 -29.93870 -28.15937
-26.93481 -25.50207 -23.54228 -22.93560 -21.56777 -19.15983 -18.41293 -17.70093
-16.66186 -16.58122 -16.30102 -15.70260 -15.57184 -14.94106 -14.74207 -14.28733
-13.99604 -13.62657 -13.49074 -13.24962 -13.02480 -12.87934 -12.83519 -12.72133
-12.53505 -12.40350 -12.35184 -12.07581 -11.77242 -11.57750 -11.30459 -11.11705
-10.73392 -10.50989 -10.41928 -10.20773 -9.12400 -7.99987 -5.95879 1.40308
1.41419 1.52986 2.52624 2.98435 3.28887 3.72767 3.82906 3.98143
4.08521 4.14014 4.19390 4.42902 4.48444 4.57181 4.67891 4.72924
4.77167 4.81383 4.84669 4.92149 5.01024 5.02272 5.04683 5.13901
5.19599 5.25811 5.26821 5.36439 5.46156 5.58135 5.61517 5.75584
5.94465 6.03056 6.24458 6.40675 6.54232 7.11696 7.30596 7.63109
9.13131
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.025774 B = 0.008754 C = 0.007184
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1086.118318 B = 3197.900070 C = 3896.612903
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 N -0.561 5.561
3 C 0.064 3.936
4 C -0.099 4.099
5 C -0.057 4.057
6 C -0.134 4.134
7 C -0.135 4.135
8 C -0.060 4.060
9 H 0.037 0.963
10 C 0.049 3.951
11 C -0.458 4.458
12 H 0.064 0.936
13 C -0.017 4.017
14 N -0.949 5.949
15 Si 0.952 3.048
16 H -0.282 1.282
17 H -0.291 1.291
18 H -0.266 1.266
19 C 0.117 3.883
20 H 0.051 0.949
21 O -0.530 6.530
22 C 0.059 3.941
23 H 0.023 0.977
24 H 0.070 0.930
25 H 0.085 0.915
26 H 0.096 0.904
27 H 0.029 0.971
28 H 0.069 0.931
29 H 0.085 0.915
30 H 0.032 0.968
31 H 0.070 0.930
32 H 0.043 0.957
33 H 0.053 0.947
34 H 0.076 0.924
35 H 0.030 0.970
36 H -0.006 1.006
37 H -0.022 1.022
38 H 0.253 0.747
39 H 0.349 0.651
40 H 0.079 0.921
41 H 0.002 0.998
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.397 4.801 10.361 17.603
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 N -0.287 5.287
3 C -0.062 4.062
4 C -0.137 4.137
5 C -0.057 4.057
6 C -0.191 4.191
7 C -0.192 4.192
8 C -0.079 4.079
9 H 0.055 0.945
10 C 0.012 3.988
11 C -0.497 4.497
12 H 0.082 0.918
13 C -0.210 4.210
14 N -0.593 5.593
15 Si 0.779 3.221
16 H -0.208 1.208
17 H -0.217 1.217
18 H -0.190 1.190
19 C 0.058 3.942
20 H 0.069 0.931
21 O -0.334 6.334
22 C -0.072 4.072
23 H 0.041 0.959
24 H 0.088 0.912
25 H 0.104 0.896
26 H 0.114 0.886
27 H 0.048 0.952
28 H 0.088 0.912
29 H 0.103 0.897
30 H 0.051 0.949
31 H 0.089 0.911
32 H 0.062 0.938
33 H 0.072 0.928
34 H 0.095 0.905
35 H 0.049 0.951
36 H 0.012 0.988
37 H -0.004 1.004
38 H 0.062 0.938
39 H 0.196 0.804
40 H 0.097 0.903
41 H 0.020 0.980
Dipole moment (debyes) X Y Z Total
from point charges -12.734 5.017 10.380 17.177
hybrid contribution -0.061 -0.867 -1.666 1.879
sum -12.794 4.150 8.714 16.027
Atomic orbital electron populations
1.22412 0.85441 1.02320 1.01415 1.58871 1.08583 1.12703 1.48503
1.21905 0.96801 0.88088 0.99453 1.21458 0.92029 1.02989 0.97201
1.20952 0.95755 0.94498 0.94493 1.21893 0.97235 1.00544 0.99460
1.21884 1.00709 0.96022 1.00606 1.21020 0.97333 0.93626 0.95904
0.94495 1.18929 0.92118 0.93631 0.94111 1.21559 0.92506 1.25471
1.10125 0.91848 1.25800 0.95140 0.99147 1.00946 1.70113 0.99229
1.48225 1.41772 0.85641 0.77565 0.78985 0.79922 1.20849 1.21695
1.18999 1.21410 0.91542 0.87686 0.93594 0.93121 1.87732 1.70114
1.17257 1.58309 1.21553 0.96163 0.97670 0.91786 0.95865 0.91153
0.89643 0.88570 0.95226 0.91188 0.89652 0.94852 0.91105 0.93760
0.92762 0.90550 0.95067 0.98814 1.00365 0.93848 0.80410 0.90318
0.97989
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.60 9.44 127.69 1.21 1.81 16
2 N -0.56 -14.36 4.19 -939.56 -3.94 -18.30 16
3 C 0.06 1.56 5.30 85.45 0.45 2.01 16
4 C -0.10 -2.52 4.19 30.16 0.13 -2.40 16
5 C -0.06 -1.88 0.32 -51.51 -0.02 -1.90 16
6 C -0.13 -4.65 7.26 71.98 0.52 -4.13 16
7 C -0.14 -4.23 8.05 71.98 0.58 -3.65 16
8 C -0.06 -2.50 0.91 -11.12 -0.01 -2.51 16
9 H 0.04 1.63 6.38 -2.39 -0.02 1.61 16
10 C 0.05 2.64 2.95 29.85 0.09 2.73 16
11 C -0.46 -26.80 6.82 25.60 0.17 -26.63 16
12 H 0.06 3.67 6.42 -2.91 -0.02 3.65 16
13 C -0.02 -1.00 5.46 84.65 0.46 -0.54 16
14 N -0.95 -60.87 13.29 21.45 0.28 -60.58 16
15 Si 0.95 47.44 29.54 68.60 2.03 49.46 16
16 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16
17 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16
18 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16
19 C 0.12 4.40 2.93 30.35 0.09 4.49 16
20 H 0.05 1.87 6.33 -2.38 -0.02 1.85 16
21 O -0.53 -22.86 8.70 -148.98 -1.30 -24.15 16
22 C 0.06 1.81 4.58 88.07 0.40 2.22 16
23 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16
24 H 0.07 1.26 7.77 -2.39 -0.02 1.24 16
25 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16
26 H 0.10 1.80 7.82 -2.38 -0.02 1.78 16
27 H 0.03 0.84 5.92 -2.39 -0.01 0.82 16
28 H 0.07 1.87 7.10 -2.39 -0.02 1.85 16
29 H 0.08 1.75 7.92 -2.39 -0.02 1.73 16
30 H 0.03 1.38 6.38 -2.38 -0.02 1.36 16
31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16
32 H 0.04 1.55 7.38 -2.39 -0.02 1.53 16
33 H 0.05 1.60 7.40 -2.39 -0.02 1.58 16
34 H 0.08 1.91 8.07 -2.39 -0.02 1.89 16
35 H 0.03 1.15 6.95 -2.39 -0.02 1.14 16
36 H -0.01 -0.38 6.64 -2.39 -0.02 -0.40 16
37 H -0.02 -1.30 6.88 -2.38 -0.02 -1.32 16
38 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16
39 H 0.35 11.60 9.06 -74.05 -0.67 10.93 16
40 H 0.08 2.18 7.73 -2.39 -0.02 2.16 16
41 H 0.00 0.07 7.54 -2.38 -0.02 0.05 16
Total: -1.00 -70.29 297.65 1.49 -68.80
By element:
Atomic # 1 Polarization: 12.95 SS G_CDS: 0.33 Total: 13.28 kcal
Atomic # 6 Polarization: -32.58 SS G_CDS: 4.08 Total: -28.50 kcal
Atomic # 7 Polarization: -75.23 SS G_CDS: -3.65 Total: -78.88 kcal
Atomic # 8 Polarization: -22.86 SS G_CDS: -1.30 Total: -24.15 kcal
Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.46 kcal
Total: -70.29 1.49 -68.80 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260730020.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.746 kcal
(2) G-P(sol) polarization free energy of solvation -70.286 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.540 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.488 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.799 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.053 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds