Wall clock time and date at job start Mon Mar 30 2020 03:50:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53006 * 109.47195 * 2 1
4 4 C 1.52995 * 109.47235 * 240.00035 * 2 1 3
5 5 C 1.53000 * 109.47422 * 182.45581 * 4 2 1
6 6 H 1.09005 * 109.45846 * 307.88173 * 5 4 2
7 7 N 1.46844 * 109.46406 * 187.90110 * 5 4 2
8 8 C 1.46903 * 111.00222 * 54.14616 * 7 5 4
9 9 C 1.46855 * 111.19443 * 178.24052 * 7 5 4
10 10 C 1.53031 * 109.52334 * 61.74707 * 9 7 5
11 11 C 1.53126 * 109.27522 * 300.81535 * 10 9 7
12 12 C 1.53041 * 109.46213 * 67.84636 * 5 4 2
13 13 O 1.42902 * 109.50097 * 299.13823 * 12 5 4
14 14 C 1.50697 * 109.50376 * 59.25620 * 12 5 4
15 15 H 1.07998 * 119.99939 * 0.02562 * 14 12 5
16 16 C 1.37871 * 120.00147 * 179.97438 * 14 12 5
17 17 N 1.31518 * 120.00087 * 0.02562 * 16 14 12
18 18 Si 1.86804 * 120.00264 * 179.97438 * 16 14 12
19 19 H 1.48500 * 109.46693 * 0.02562 * 18 16 14
20 20 H 1.48501 * 109.47091 * 120.00077 * 18 16 14
21 21 H 1.48498 * 109.47436 * 240.00233 * 18 16 14
22 22 H 1.08996 * 109.47292 * 179.97438 * 1 2 3
23 23 H 1.09003 * 109.46634 * 60.00181 * 1 2 3
24 24 H 1.08994 * 109.47247 * 300.00314 * 1 2 3
25 25 H 1.08997 * 109.47288 * 119.99825 * 2 1 3
26 26 H 1.08997 * 109.46886 * 304.20462 * 3 2 1
27 27 H 1.09001 * 109.46565 * 64.20547 * 3 2 1
28 28 H 1.09000 * 109.46532 * 184.20414 * 3 2 1
29 29 H 1.09003 * 109.47200 * 302.45445 * 4 2 1
30 30 H 1.08998 * 109.47218 * 62.45381 * 4 2 1
31 31 H 1.08999 * 109.46975 * 54.04850 * 8 7 5
32 32 H 1.09000 * 109.46968 * 174.05194 * 8 7 5
33 33 H 1.09001 * 109.46467 * 294.04688 * 8 7 5
34 34 H 1.09007 * 109.45721 * 181.75518 * 9 7 5
35 35 H 1.08994 * 109.46289 * 301.73333 * 9 7 5
36 36 H 1.08997 * 109.50828 * 60.75856 * 10 9 7
37 37 H 1.09001 * 109.50264 * 180.83856 * 10 9 7
38 38 H 1.09000 * 109.52307 * 177.56120 * 11 10 9
39 39 H 1.08999 * 109.52439 * 297.68896 * 11 10 9
40 40 H 0.96707 * 113.99727 * 180.02562 * 13 12 5
41 41 H 0.97002 * 120.00228 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2492
5 6 3.5688 -0.7750 -1.2187
6 1 3.9642 0.2276 -1.0557
7 7 4.0657 -1.2948 -2.4990
8 6 3.5331 -0.5167 -3.6255
9 6 5.5337 -1.3234 -2.5265
10 6 6.0477 -2.2583 -1.4294
11 6 5.5538 -1.7600 -0.0684
12 6 4.0241 -1.6935 -0.0824
13 8 3.5576 -1.1761 1.1653
14 6 3.4623 -3.0753 -0.2966
15 1 2.8427 -3.2788 -1.1574
16 6 3.7403 -4.0800 0.6057
17 7 4.4954 -3.8323 1.6537
18 14 3.0434 -5.7928 0.3406
19 1 2.2316 -5.8097 -0.9028
20 1 4.1574 -6.7669 0.2172
21 1 2.1875 -6.1633 1.4961
22 1 -0.3634 -1.0276 -0.0005
23 1 -0.3633 0.5138 -0.8901
24 1 -0.3633 0.5138 0.8899
25 1 1.8934 -0.5138 0.8900
26 1 1.6165 1.9776 -0.8499
27 1 1.7395 1.9341 0.9253
28 1 3.1274 1.4433 -0.0753
29 1 1.6412 -1.7354 -1.2715
30 1 1.7131 -0.1826 -2.1386
31 1 3.7521 0.5401 -3.4729
32 1 3.9979 -0.8541 -4.5520
33 1 2.4542 -0.6591 -3.6874
34 1 5.8717 -1.6835 -3.4983
35 1 5.9198 -0.3183 -2.3574
36 1 5.6732 -3.2667 -1.6056
37 1 7.1376 -2.2678 -1.4405
38 1 5.8813 -2.4471 0.7118
39 1 5.9607 -0.7676 0.1258
40 1 3.8105 -1.7092 1.9314
41 1 4.6907 -4.5391 2.2887
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260793967.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:50:04
Heat of formation + Delta-G solvation = -55.211361 kcal
Electronic energy + Delta-G solvation = -19754.410159 eV
Core-core repulsion = 17054.909189 eV
Total energy + Delta-G solvation = -2699.500970 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.01733 -35.31037 -35.03185 -32.07075 -31.54088 -29.57359 -26.61088 -26.07602
-25.46736 -24.65015 -21.35976 -20.83616 -19.12899 -18.54420 -16.42085 -15.26047
-15.02196 -14.57711 -14.38264 -14.00699 -13.48847 -13.08929 -12.96986 -12.61690
-12.33748 -12.12776 -11.83430 -11.66604 -11.41332 -11.26922 -11.15969 -10.92024
-10.85869 -10.66380 -10.38763 -10.30749 -9.97231 -9.75364 -9.60298 -9.57270
-9.25309 -8.67674 -8.40735 -7.79139 -7.41634 -6.00948 -4.04959 3.30473
3.39719 3.45518 4.45203 4.59368 5.24416 5.60966 5.64661 5.69566
5.75116 5.81788 5.87750 6.02275 6.09849 6.14498 6.19002 6.28719
6.31285 6.34091 6.39186 6.44092 6.51203 6.61862 6.69484 6.75822
6.81676 6.84062 7.04517 7.13310 7.29147 7.34361 7.42228 7.74989
7.80235 7.93227 7.98827 8.19392 8.41669 8.99487 9.54566 9.64815
11.02725
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.018688 B = 0.012005 C = 0.009555
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1497.924219 B = 2331.810291 C = 2929.802840
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.112 4.112
3 C -0.136 4.136
4 C -0.093 4.093
5 C 0.109 3.891
6 H 0.022 0.978
7 N -0.521 5.521
8 C 0.026 3.974
9 C 0.063 3.937
10 C -0.101 4.101
11 C -0.141 4.141
12 C 0.260 3.740
13 O -0.583 6.583
14 C -0.491 4.491
15 H 0.067 0.933
16 C 0.061 3.939
17 N -0.908 5.908
18 Si 0.891 3.109
19 H -0.273 1.273
20 H -0.287 1.287
21 H -0.287 1.287
22 H 0.050 0.950
23 H 0.037 0.963
24 H 0.043 0.957
25 H 0.126 0.874
26 H 0.033 0.967
27 H 0.041 0.959
28 H 0.053 0.947
29 H 0.076 0.924
30 H 0.036 0.964
31 H 0.013 0.987
32 H 0.056 0.944
33 H 0.067 0.933
34 H 0.058 0.942
35 H 0.015 0.985
36 H 0.078 0.922
37 H 0.040 0.960
38 H 0.096 0.904
39 H 0.017 0.983
40 H 0.378 0.622
41 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.347 5.763 -4.820 7.633
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.130 4.130
3 C -0.193 4.193
4 C -0.130 4.130
5 C 0.001 3.999
6 H 0.039 0.961
7 N -0.246 5.246
8 C -0.122 4.122
9 C -0.065 4.065
10 C -0.139 4.139
11 C -0.179 4.179
12 C 0.220 3.780
13 O -0.393 6.393
14 C -0.530 4.530
15 H 0.086 0.914
16 C -0.138 4.138
17 N -0.550 5.550
18 Si 0.720 3.280
19 H -0.198 1.198
20 H -0.214 1.214
21 H -0.213 1.213
22 H 0.069 0.931
23 H 0.057 0.943
24 H 0.062 0.938
25 H 0.143 0.857
26 H 0.052 0.948
27 H 0.060 0.940
28 H 0.072 0.928
29 H 0.095 0.905
30 H 0.054 0.946
31 H 0.031 0.969
32 H 0.075 0.925
33 H 0.086 0.914
34 H 0.077 0.923
35 H 0.033 0.967
36 H 0.097 0.903
37 H 0.059 0.941
38 H 0.114 0.886
39 H 0.035 0.965
40 H 0.229 0.771
41 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -1.695 5.651 -5.112 7.806
hybrid contribution 0.318 -0.557 0.194 0.670
sum -1.377 5.094 -4.918 7.213
Atomic orbital electron populations
1.21817 0.97240 1.00891 0.99849 1.21497 0.93415 0.95605 1.02522
1.21795 1.01095 0.97044 0.99413 1.21561 0.94582 1.01104 0.95776
1.21540 0.94695 0.94787 0.88880 0.96061 1.61686 1.07662 1.52858
1.02431 1.22371 1.00916 0.94726 0.94203 1.22047 0.87805 0.97497
0.99115 1.21402 0.97029 1.00574 0.94909 1.22228 0.99601 0.98488
0.97593 1.18512 0.88503 0.90505 0.80469 1.86007 1.79182 1.55927
1.18137 1.21681 1.29355 0.93870 1.08054 0.91438 1.24967 0.94779
0.98703 0.95331 1.69587 1.38704 1.33427 1.13312 0.86540 0.78807
0.84586 0.78047 1.19785 1.21354 1.21324 0.93068 0.94345 0.93809
0.85682 0.94810 0.94012 0.92755 0.90494 0.94585 0.96875 0.92505
0.91439 0.92305 0.96698 0.90289 0.94147 0.88602 0.96472 0.77071
0.92836
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.30 9.19 37.16 0.34 -1.95 16
2 C -0.11 -2.11 2.54 -90.62 -0.23 -2.34 16
3 C -0.14 -2.34 9.01 37.16 0.33 -2.00 16
4 C -0.09 -1.84 3.85 -26.73 -0.10 -1.94 16
5 C 0.11 2.30 1.29 -67.72 -0.09 2.21 16
6 H 0.02 0.47 6.05 -51.93 -0.31 0.16 16
7 N -0.52 -10.36 4.31 -234.92 -1.01 -11.37 16
8 C 0.03 0.43 8.91 60.07 0.54 0.97 16
9 C 0.06 1.20 5.46 -3.83 -0.02 1.17 16
10 C -0.10 -2.11 5.84 -26.65 -0.16 -2.27 16
11 C -0.14 -3.27 4.95 -26.61 -0.13 -3.40 16
12 C 0.26 6.11 0.53 -91.69 -0.05 6.06 16
13 O -0.58 -14.05 9.36 -35.23 -0.33 -14.38 16
14 C -0.49 -12.55 5.93 -34.44 -0.20 -12.75 16
15 H 0.07 1.81 6.64 -52.49 -0.35 1.46 16
16 C 0.06 1.58 5.22 -17.82 -0.09 1.49 16
17 N -0.91 -23.71 9.68 55.43 0.54 -23.17 16
18 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16
19 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16
20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16
21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16
22 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16
23 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16
24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16
25 H 0.13 2.73 4.88 -51.85 -0.25 2.48 16
26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16
27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16
28 H 0.05 1.00 6.13 -51.93 -0.32 0.68 16
29 H 0.08 1.70 6.35 -51.93 -0.33 1.37 16
30 H 0.04 0.65 6.01 -51.93 -0.31 0.34 16
31 H 0.01 0.20 8.12 -51.93 -0.42 -0.22 16
32 H 0.06 0.82 7.98 -51.93 -0.41 0.41 16
33 H 0.07 1.07 6.41 -51.93 -0.33 0.74 16
34 H 0.06 0.99 8.01 -51.93 -0.42 0.57 16
35 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16
36 H 0.08 1.81 7.35 -51.93 -0.38 1.43 16
37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16
38 H 0.10 2.44 6.04 -51.93 -0.31 2.13 16
39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16
40 H 0.38 9.53 7.15 45.64 0.33 9.86 16
41 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16
LS Contribution 297.52 15.07 4.48 4.48
Total: -1.00 -25.56 297.52 -7.55 -33.11
By element:
Atomic # 1 Polarization: 16.57 SS G_CDS: -6.35 Total: 10.23 kcal
Atomic # 6 Polarization: -14.90 SS G_CDS: 0.14 Total: -14.76 kcal
Atomic # 7 Polarization: -34.06 SS G_CDS: -0.48 Total: -34.54 kcal
Atomic # 8 Polarization: -14.05 SS G_CDS: -0.33 Total: -14.38 kcal
Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal
Total LS contribution 4.48 Total: 4.48 kcal
Total: -25.56 -7.55 -33.11 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260793967.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.098 kcal
(2) G-P(sol) polarization free energy of solvation -25.559 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.657 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.113 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.211 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds