Wall clock time and date at job start Mon Mar 30 2020 03:24:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46897 * 1
3 3 C 1.39780 * 111.00103 * 2 1
4 4 C 1.54436 * 111.75899 * 170.86454 * 3 2 1
5 5 C 1.50761 * 109.11479 * 77.33220 * 4 3 2
6 6 C 1.52998 * 108.85193 * 27.84453 * 5 4 3
7 7 C 1.52991 * 108.85457 * 146.23174 * 5 4 3
8 8 C 1.54065 * 112.67343 * 267.11252 * 5 4 3
9 9 C 1.53814 * 112.00541 * 41.38940 * 8 5 4
10 10 H 1.09000 * 108.98993 * 280.50757 * 9 8 5
11 11 O 1.42895 * 109.05365 * 161.57379 * 9 8 5
12 12 C 1.47628 * 110.99795 * 231.08905 * 2 1 3
13 13 H 1.08997 * 109.74738 * 90.01042 * 12 2 1
14 14 C 1.52996 * 109.75050 * 329.32676 * 12 2 1
15 15 C 1.50692 * 109.47239 * 296.90852 * 14 12 2
16 16 H 1.08001 * 120.00270 * 3.25489 * 15 14 12
17 17 C 1.37884 * 120.00243 * 183.24865 * 15 14 12
18 18 N 1.31514 * 119.99500 * 0.02562 * 17 15 14
19 19 Si 1.86799 * 119.99975 * 179.97438 * 17 15 14
20 20 H 1.48502 * 109.47060 * 90.00625 * 19 17 15
21 21 H 1.48503 * 109.46787 * 210.00178 * 19 17 15
22 22 H 1.48494 * 109.47257 * 330.00114 * 19 17 15
23 23 H 1.09003 * 109.47192 * 67.77699 * 1 2 3
24 24 H 1.09000 * 109.47476 * 187.78111 * 1 2 3
25 25 H 1.09000 * 109.47090 * 307.78520 * 1 2 3
26 26 H 1.08996 * 109.02614 * 50.27148 * 3 2 1
27 27 H 1.09001 * 109.01884 * 291.44302 * 3 2 1
28 28 H 1.08999 * 109.54178 * 197.24352 * 4 3 2
29 29 H 1.09000 * 109.54022 * 317.42020 * 4 3 2
30 30 H 1.08998 * 109.47005 * 77.10468 * 6 5 4
31 31 H 1.09000 * 109.47140 * 197.10939 * 6 5 4
32 32 H 1.09006 * 109.47465 * 317.10761 * 6 5 4
33 33 H 1.08997 * 109.47582 * 59.99964 * 7 5 4
34 34 H 1.09001 * 109.46897 * 180.02562 * 7 5 4
35 35 H 1.09002 * 109.47048 * 299.99661 * 7 5 4
36 36 H 1.08998 * 108.91180 * 280.76739 * 8 5 4
37 37 H 1.09002 * 109.01472 * 162.06965 * 8 5 4
38 38 H 0.96700 * 114.00567 * 57.88333 * 11 9 8
39 39 H 1.09004 * 109.47019 * 56.91210 * 14 12 2
40 40 H 1.09003 * 109.47287 * 176.90440 * 14 12 2
41 41 H 0.97004 * 119.99577 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9699 1.3050 0.0000
4 6 3.4972 1.3319 0.2277
5 6 4.1941 0.9496 -1.0533
6 6 3.3040 1.3383 -2.2354
7 6 5.5088 1.7260 -1.1516
8 6 4.4983 -0.5584 -1.1367
9 6 3.3284 -1.4118 -0.6181
10 1 3.3543 -1.4246 0.4715
11 8 3.4745 -2.7479 -1.1035
12 6 1.9980 -0.8657 -1.0724
13 1 2.1301 -0.2833 -1.9843
14 6 1.0270 -2.0192 -1.3320
15 6 0.9202 -2.8738 -0.0954
16 1 1.4469 -2.5906 0.8039
17 6 0.1501 -4.0174 -0.1120
18 7 -0.4910 -4.3625 -1.2073
19 14 0.0184 -5.0771 1.4207
20 1 -1.1278 -4.6157 2.2445
21 1 -0.1936 -6.4931 1.0266
22 1 1.2717 -4.9650 2.2092
23 1 -0.3634 0.3887 -0.9513
24 1 -0.3634 -1.0182 0.1391
25 1 -0.3633 0.6297 0.8122
26 1 1.4824 1.8727 0.7925
27 1 1.7455 1.7716 -0.9592
28 1 3.8039 2.3349 0.5244
29 1 3.7614 0.6228 1.0122
30 1 3.3709 2.4133 -2.4025
31 1 3.6360 0.8102 -3.1293
32 1 2.2708 1.0683 -2.0166
33 1 6.1416 1.4784 -0.2994
34 1 6.0212 1.4572 -2.0753
35 1 5.2999 2.7958 -1.1505
36 1 5.3854 -0.7734 -0.5410
37 1 4.6975 -0.8236 -2.1750
38 1 4.3079 -3.1689 -0.8520
39 1 0.0449 -1.6181 -1.5823
40 1 1.3945 -2.6240 -2.1610
41 1 -1.0325 -5.1672 -1.2191
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260813432.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:24:11
Heat of formation + Delta-G solvation = -14.293101 kcal
Electronic energy + Delta-G solvation = -19584.343869 eV
Core-core repulsion = 16886.617248 eV
Total energy + Delta-G solvation = -2697.726621 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.33898 -35.94390 -35.75001 -32.69379 -30.75739 -28.85915 -28.07731 -27.48913
-25.51632 -23.90095 -22.04144 -21.96640 -18.82310 -18.16049 -16.53495 -16.00245
-15.55864 -15.11276 -14.55066 -14.34076 -14.12173 -13.48196 -13.29741 -12.54531
-12.52415 -12.35040 -12.08773 -11.83568 -11.66751 -11.38251 -11.12032 -10.87693
-10.75678 -10.66728 -10.42998 -10.32053 -10.22839 -10.17671 -9.93472 -9.68261
-9.11982 -8.85580 -8.61515 -8.13446 -7.17893 -5.76581 -3.70602 3.44231
3.50575 3.54706 4.56717 4.66287 4.84231 4.93606 5.01102 5.39223
5.46861 5.57104 5.62910 5.70231 5.72732 5.76961 5.79886 5.91278
5.99436 6.02812 6.07088 6.18320 6.24011 6.28505 6.31259 6.40831
6.45453 6.49700 6.65479 6.72802 6.91193 6.97548 7.20146 7.72382
7.81144 8.11493 8.22207 8.35201 8.65316 8.71612 9.31900 9.87031
11.35851
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.032951 B = 0.008125 C = 0.007535
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 849.545833 B = 3445.153525 C = 3714.969675
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 N -0.546 5.546
3 C 0.060 3.940
4 C -0.108 4.108
5 C -0.059 4.059
6 C -0.173 4.173
7 C -0.139 4.139
8 C -0.144 4.144
9 C 0.128 3.872
10 H 0.056 0.944
11 O -0.531 6.531
12 C 0.086 3.914
13 H 0.052 0.948
14 C 0.029 3.971
15 C -0.463 4.463
16 H 0.058 0.942
17 C 0.049 3.951
18 N -0.905 5.905
19 Si 0.885 3.115
20 H -0.286 1.286
21 H -0.292 1.292
22 H -0.277 1.277
23 H 0.009 0.991
24 H 0.110 0.890
25 H 0.043 0.957
26 H 0.058 0.942
27 H 0.029 0.971
28 H 0.061 0.939
29 H 0.071 0.929
30 H 0.046 0.954
31 H 0.050 0.950
32 H 0.093 0.907
33 H 0.051 0.949
34 H 0.050 0.950
35 H 0.051 0.949
36 H 0.052 0.948
37 H 0.063 0.937
38 H 0.351 0.649
39 H 0.012 0.988
40 H 0.032 0.968
41 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.004 11.538 0.644 14.650
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 N -0.271 5.271
3 C -0.069 4.069
4 C -0.146 4.146
5 C -0.059 4.059
6 C -0.229 4.229
7 C -0.196 4.196
8 C -0.182 4.182
9 C 0.069 3.931
10 H 0.074 0.926
11 O -0.332 6.332
12 C -0.020 4.020
13 H 0.069 0.931
14 C -0.008 4.008
15 C -0.502 4.502
16 H 0.076 0.924
17 C -0.150 4.150
18 N -0.547 5.547
19 Si 0.715 3.285
20 H -0.212 1.212
21 H -0.218 1.218
22 H -0.202 1.202
23 H 0.028 0.972
24 H 0.128 0.872
25 H 0.062 0.938
26 H 0.076 0.924
27 H 0.047 0.953
28 H 0.079 0.921
29 H 0.090 0.910
30 H 0.065 0.935
31 H 0.069 0.931
32 H 0.111 0.889
33 H 0.070 0.930
34 H 0.069 0.931
35 H 0.070 0.930
36 H 0.071 0.929
37 H 0.082 0.918
38 H 0.195 0.805
39 H 0.030 0.970
40 H 0.050 0.950
41 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges 8.461 11.347 0.720 14.173
hybrid contribution 0.371 -0.354 0.384 0.640
sum 8.832 10.994 1.104 14.145
Atomic orbital electron populations
1.22491 0.86372 1.05217 0.97539 1.58433 1.08100 1.11120 1.49475
1.21199 0.94886 0.91186 0.99662 1.21555 0.94949 1.00869 0.97214
1.20199 0.95052 0.94768 0.95879 1.22868 1.02327 1.00231 0.97507
1.21982 0.96968 0.99396 1.01245 1.22894 0.99316 0.94372 1.01605
1.21358 0.92861 0.81618 0.97304 0.92602 1.86969 1.40965 1.26971
1.78264 1.21783 0.94940 0.94926 0.90313 0.93051 1.19230 0.92046
0.91314 0.98215 1.20988 1.26028 1.06078 0.97126 0.92411 1.24963
0.96743 0.97780 0.95503 1.69967 1.32554 1.25379 1.26779 0.86707
0.78002 0.79859 0.83975 1.21237 1.21805 1.20245 0.97242 0.87167
0.93786 0.92370 0.95316 0.92075 0.90988 0.93465 0.93081 0.88890
0.92974 0.93098 0.92973 0.92881 0.91846 0.80544 0.96970 0.95006
0.93591
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.60 8.21 60.06 0.49 1.09 16
2 N -0.55 -10.42 3.92 -240.26 -0.94 -11.37 16
3 C 0.06 0.94 4.83 -6.74 -0.03 0.91 16
4 C -0.11 -1.50 5.02 -27.10 -0.14 -1.64 16
5 C -0.06 -0.80 0.72 -155.08 -0.11 -0.91 16
6 C -0.17 -2.41 6.48 37.16 0.24 -2.17 16
7 C -0.14 -1.55 7.96 37.15 0.30 -1.26 16
8 C -0.14 -2.18 4.49 -25.75 -0.12 -2.29 16
9 C 0.13 2.45 2.09 -27.40 -0.06 2.39 16
10 H 0.06 1.15 6.97 -51.93 -0.36 0.78 16
11 O -0.53 -11.12 10.67 -35.23 -0.38 -11.49 16
12 C 0.09 1.78 2.06 -68.41 -0.14 1.64 16
13 H 0.05 1.03 4.01 -51.93 -0.21 0.82 16
14 C 0.03 0.74 3.71 -27.89 -0.10 0.64 16
15 C -0.46 -12.76 5.62 -34.44 -0.19 -12.96 16
16 H 0.06 1.61 7.09 -52.49 -0.37 1.24 16
17 C 0.05 1.40 5.46 -17.82 -0.10 1.30 16
18 N -0.91 -27.55 13.29 55.43 0.74 -26.81 16
19 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16
20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
21 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16
22 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16
23 H 0.01 0.17 7.96 -51.93 -0.41 -0.24 16
24 H 0.11 2.56 5.09 -51.93 -0.26 2.30 16
25 H 0.04 0.75 7.88 -51.93 -0.41 0.34 16
26 H 0.06 0.85 7.83 -51.93 -0.41 0.45 16
27 H 0.03 0.45 4.98 -51.93 -0.26 0.19 16
28 H 0.06 0.73 7.68 -51.93 -0.40 0.33 16
29 H 0.07 1.09 7.11 -51.93 -0.37 0.72 16
30 H 0.05 0.58 7.94 -51.93 -0.41 0.17 16
31 H 0.05 0.72 7.65 -51.93 -0.40 0.32 16
32 H 0.09 1.48 2.69 -51.93 -0.14 1.34 16
33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
35 H 0.05 0.53 8.02 -51.93 -0.42 0.12 16
36 H 0.05 0.72 7.98 -51.93 -0.41 0.31 16
37 H 0.06 0.98 7.65 -51.93 -0.40 0.58 16
38 H 0.35 5.70 9.06 45.56 0.41 6.11 16
39 H 0.01 0.33 6.29 -51.93 -0.33 0.00 16
40 H 0.03 0.92 7.52 -51.93 -0.39 0.53 16
41 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16
LS Contribution 291.37 15.07 4.39 4.39
Total: -1.00 -30.60 291.37 -7.09 -37.70
By element:
Atomic # 1 Polarization: 9.48 SS G_CDS: -5.92 Total: 3.56 kcal
Atomic # 6 Polarization: -13.28 SS G_CDS: 0.04 Total: -13.24 kcal
Atomic # 7 Polarization: -37.97 SS G_CDS: -0.21 Total: -38.17 kcal
Atomic # 8 Polarization: -11.12 SS G_CDS: -0.38 Total: -11.49 kcal
Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal
Total LS contribution 4.39 Total: 4.39 kcal
Total: -30.60 -7.09 -37.70 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260813432.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.405 kcal
(2) G-P(sol) polarization free energy of solvation -30.604 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.199 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.698 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.293 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds