Wall clock time and date at job start Mon Mar 30 2020 03:24:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46897 * 1
3 3 C 1.39780 * 111.00103 * 2 1
4 4 C 1.54436 * 111.75899 * 170.86454 * 3 2 1
5 5 C 1.50761 * 109.11479 * 77.33220 * 4 3 2
6 6 C 1.52998 * 108.85193 * 27.84453 * 5 4 3
7 7 C 1.52991 * 108.85457 * 146.23174 * 5 4 3
8 8 C 1.54065 * 112.67343 * 267.11252 * 5 4 3
9 9 C 1.53814 * 112.00541 * 41.38940 * 8 5 4
10 10 H 1.09000 * 108.98993 * 280.50757 * 9 8 5
11 11 O 1.42895 * 109.05365 * 161.57379 * 9 8 5
12 12 C 1.47628 * 110.99795 * 231.08905 * 2 1 3
13 13 H 1.08997 * 109.74738 * 90.01042 * 12 2 1
14 14 C 1.52996 * 109.75050 * 329.32676 * 12 2 1
15 15 C 1.50692 * 109.47239 * 296.90852 * 14 12 2
16 16 H 1.08001 * 120.00270 * 3.25489 * 15 14 12
17 17 C 1.37884 * 120.00243 * 183.24865 * 15 14 12
18 18 N 1.31514 * 119.99500 * 0.02562 * 17 15 14
19 19 Si 1.86799 * 119.99975 * 179.97438 * 17 15 14
20 20 H 1.48502 * 109.47060 * 90.00625 * 19 17 15
21 21 H 1.48503 * 109.46787 * 210.00178 * 19 17 15
22 22 H 1.48494 * 109.47257 * 330.00114 * 19 17 15
23 23 H 1.09003 * 109.47192 * 67.77699 * 1 2 3
24 24 H 1.09000 * 109.47476 * 187.78111 * 1 2 3
25 25 H 1.09000 * 109.47090 * 307.78520 * 1 2 3
26 26 H 1.08996 * 109.02614 * 50.27148 * 3 2 1
27 27 H 1.09001 * 109.01884 * 291.44302 * 3 2 1
28 28 H 1.08999 * 109.54178 * 197.24352 * 4 3 2
29 29 H 1.09000 * 109.54022 * 317.42020 * 4 3 2
30 30 H 1.08998 * 109.47005 * 77.10468 * 6 5 4
31 31 H 1.09000 * 109.47140 * 197.10939 * 6 5 4
32 32 H 1.09006 * 109.47465 * 317.10761 * 6 5 4
33 33 H 1.08997 * 109.47582 * 59.99964 * 7 5 4
34 34 H 1.09001 * 109.46897 * 180.02562 * 7 5 4
35 35 H 1.09002 * 109.47048 * 299.99661 * 7 5 4
36 36 H 1.08998 * 108.91180 * 280.76739 * 8 5 4
37 37 H 1.09002 * 109.01472 * 162.06965 * 8 5 4
38 38 H 0.96700 * 114.00567 * 57.88333 * 11 9 8
39 39 H 1.09004 * 109.47019 * 56.91210 * 14 12 2
40 40 H 1.09003 * 109.47287 * 176.90440 * 14 12 2
41 41 H 0.97004 * 119.99577 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9699 1.3050 0.0000
4 6 3.4972 1.3319 0.2277
5 6 4.1941 0.9496 -1.0533
6 6 3.3040 1.3383 -2.2354
7 6 5.5088 1.7260 -1.1516
8 6 4.4983 -0.5584 -1.1367
9 6 3.3284 -1.4118 -0.6181
10 1 3.3543 -1.4246 0.4715
11 8 3.4745 -2.7479 -1.1035
12 6 1.9980 -0.8657 -1.0724
13 1 2.1301 -0.2833 -1.9843
14 6 1.0270 -2.0192 -1.3320
15 6 0.9202 -2.8738 -0.0954
16 1 1.4469 -2.5906 0.8039
17 6 0.1501 -4.0174 -0.1120
18 7 -0.4910 -4.3625 -1.2073
19 14 0.0184 -5.0771 1.4207
20 1 -1.1278 -4.6157 2.2445
21 1 -0.1936 -6.4931 1.0266
22 1 1.2717 -4.9650 2.2092
23 1 -0.3634 0.3887 -0.9513
24 1 -0.3634 -1.0182 0.1391
25 1 -0.3633 0.6297 0.8122
26 1 1.4824 1.8727 0.7925
27 1 1.7455 1.7716 -0.9592
28 1 3.8039 2.3349 0.5244
29 1 3.7614 0.6228 1.0122
30 1 3.3709 2.4133 -2.4025
31 1 3.6360 0.8102 -3.1293
32 1 2.2708 1.0683 -2.0166
33 1 6.1416 1.4784 -0.2994
34 1 6.0212 1.4572 -2.0753
35 1 5.2999 2.7958 -1.1505
36 1 5.3854 -0.7734 -0.5410
37 1 4.6975 -0.8236 -2.1750
38 1 4.3079 -3.1689 -0.8520
39 1 0.0449 -1.6181 -1.5823
40 1 1.3945 -2.6240 -2.1610
41 1 -1.0325 -5.1672 -1.2191
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260813432.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:24:11
Heat of formation + Delta-G solvation = -36.106319 kcal
Electronic energy + Delta-G solvation = -19585.289761 eV
Core-core repulsion = 16886.617248 eV
Total energy + Delta-G solvation = -2698.672513 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-41.69791 -37.41733 -37.20124 -34.74466 -32.46443 -30.17183 -29.64700 -28.66972
-27.03424 -25.61531 -23.68266 -23.36792 -20.49646 -19.32539 -18.32185 -17.77063
-16.93605 -16.68291 -16.26157 -15.78458 -15.65206 -14.81845 -14.70136 -14.19811
-13.93068 -13.88516 -13.35579 -13.29551 -13.07895 -12.87118 -12.69172 -12.50033
-12.30783 -12.24171 -12.10058 -11.85177 -11.64718 -11.50124 -11.29354 -11.19726
-11.02971 -10.71192 -10.37732 -10.20683 -8.67525 -7.99293 -5.98911 1.42841
1.43518 1.54012 2.52678 3.09353 3.36208 3.68008 3.86814 3.89516
4.07346 4.22160 4.28951 4.53309 4.54388 4.57884 4.61957 4.72862
4.77051 4.81204 4.86617 4.90398 5.02675 5.04369 5.07875 5.18765
5.21638 5.27626 5.32910 5.47052 5.52368 5.53270 5.60212 5.64228
5.76142 5.96105 6.41497 6.49928 6.90116 7.09417 7.27279 7.62061
9.13578
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.032951 B = 0.008125 C = 0.007535
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 849.545833 B = 3445.153525 C = 3714.969675
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.036 3.964
2 N -0.552 5.552
3 C 0.052 3.948
4 C -0.102 4.102
5 C -0.059 4.059
6 C -0.171 4.171
7 C -0.132 4.132
8 C -0.134 4.134
9 C 0.130 3.870
10 H 0.041 0.959
11 O -0.564 6.564
12 C 0.092 3.908
13 H 0.061 0.939
14 C 0.039 3.961
15 C -0.451 4.451
16 H 0.054 0.946
17 C -0.010 4.010
18 N -0.945 5.945
19 Si 0.950 3.050
20 H -0.278 1.278
21 H -0.292 1.292
22 H -0.269 1.269
23 H 0.009 0.991
24 H 0.067 0.933
25 H 0.071 0.929
26 H 0.073 0.927
27 H 0.037 0.963
28 H 0.090 0.910
29 H 0.060 0.940
30 H 0.068 0.932
31 H 0.045 0.955
32 H 0.070 0.930
33 H 0.060 0.940
34 H 0.054 0.946
35 H 0.067 0.933
36 H 0.072 0.928
37 H 0.060 0.940
38 H 0.370 0.630
39 H -0.011 1.011
40 H -0.009 1.009
41 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.763 13.450 1.886 17.329
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.111 4.111
2 N -0.277 5.277
3 C -0.076 4.076
4 C -0.140 4.140
5 C -0.060 4.060
6 C -0.227 4.227
7 C -0.190 4.190
8 C -0.172 4.172
9 C 0.071 3.929
10 H 0.059 0.941
11 O -0.368 6.368
12 C -0.015 4.015
13 H 0.079 0.921
14 C 0.002 3.998
15 C -0.489 4.489
16 H 0.072 0.928
17 C -0.205 4.205
18 N -0.589 5.589
19 Si 0.777 3.223
20 H -0.204 1.204
21 H -0.218 1.218
22 H -0.194 1.194
23 H 0.027 0.973
24 H 0.086 0.914
25 H 0.089 0.911
26 H 0.091 0.909
27 H 0.055 0.945
28 H 0.108 0.892
29 H 0.078 0.922
30 H 0.087 0.913
31 H 0.064 0.936
32 H 0.088 0.912
33 H 0.079 0.921
34 H 0.073 0.927
35 H 0.086 0.914
36 H 0.091 0.909
37 H 0.078 0.922
38 H 0.216 0.784
39 H 0.007 0.993
40 H 0.009 0.991
41 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges 10.244 13.275 1.979 16.884
hybrid contribution -0.194 -0.908 -0.031 0.929
sum 10.050 12.367 1.948 16.054
Atomic orbital electron populations
1.22328 0.87137 1.03043 0.98611 1.58473 1.07605 1.13082 1.48565
1.21367 0.96445 0.89169 1.00650 1.21544 0.93313 1.02244 0.96904
1.20233 0.96501 0.93692 0.95539 1.22795 1.00797 1.01607 0.97504
1.21916 0.95332 0.99822 1.01892 1.22761 0.97932 0.95043 1.01425
1.21348 0.93568 0.81609 0.96361 0.94136 1.86906 1.42792 1.28410
1.78687 1.21632 0.94448 0.93638 0.91755 0.92138 1.19012 0.92071
0.92566 0.96169 1.21108 1.24728 1.05854 0.97229 0.92815 1.25763
0.96827 0.99453 0.98413 1.70112 1.33814 1.26015 1.28972 0.85671
0.78321 0.77860 0.80424 1.20438 1.21839 1.19391 0.97269 0.91416
0.91054 0.90915 0.94507 0.89166 0.92156 0.91271 0.93607 0.91215
0.92082 0.92732 0.91426 0.90920 0.92165 0.78408 0.99266 0.99086
0.93776
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.42 8.21 127.69 1.05 2.47 16
2 N -0.55 -20.73 3.92 -914.05 -3.58 -24.31 16
3 C 0.05 1.51 4.83 88.07 0.43 1.94 16
4 C -0.10 -2.50 5.02 30.36 0.15 -2.34 16
5 C -0.06 -1.43 0.72 -52.55 -0.04 -1.46 16
6 C -0.17 -4.34 6.48 71.98 0.47 -3.87 16
7 C -0.13 -2.39 7.96 71.98 0.57 -1.81 16
8 C -0.13 -3.78 4.49 31.23 0.14 -3.64 16
9 C 0.13 4.94 2.09 30.16 0.06 5.01 16
10 H 0.04 1.65 6.97 -2.39 -0.02 1.63 16
11 O -0.56 -23.99 10.67 -148.98 -1.59 -25.58 16
12 C 0.09 3.83 2.06 44.07 0.09 3.92 16
13 H 0.06 2.43 4.01 -2.39 -0.01 2.42 16
14 C 0.04 2.09 3.71 29.84 0.11 2.20 16
15 C -0.45 -25.51 5.62 25.60 0.14 -25.37 16
16 H 0.05 3.04 7.09 -2.91 -0.02 3.02 16
17 C -0.01 -0.59 5.46 84.66 0.46 -0.13 16
18 N -0.95 -59.59 13.29 21.45 0.28 -59.31 16
19 Si 0.95 46.54 29.54 68.60 2.03 48.57 16
20 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16
21 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16
22 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16
23 H 0.01 0.34 7.96 -2.39 -0.02 0.32 16
24 H 0.07 3.25 5.09 -2.39 -0.01 3.24 16
25 H 0.07 2.36 7.88 -2.39 -0.02 2.34 16
26 H 0.07 1.91 7.83 -2.39 -0.02 1.89 16
27 H 0.04 1.05 4.98 -2.39 -0.01 1.04 16
28 H 0.09 1.72 7.68 -2.39 -0.02 1.70 16
29 H 0.06 1.64 7.11 -2.39 -0.02 1.63 16
30 H 0.07 1.45 7.94 -2.39 -0.02 1.43 16
31 H 0.04 1.20 7.65 -2.39 -0.02 1.18 16
32 H 0.07 2.11 2.69 -2.38 -0.01 2.10 16
33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16
34 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16
35 H 0.07 1.04 8.02 -2.39 -0.02 1.02 16
36 H 0.07 1.77 7.98 -2.39 -0.02 1.76 16
37 H 0.06 1.75 7.65 -2.39 -0.02 1.74 16
38 H 0.37 11.99 9.06 -74.06 -0.67 11.32 16
39 H -0.01 -0.62 6.29 -2.38 -0.02 -0.64 16
40 H -0.01 -0.56 7.52 -2.39 -0.02 -0.58 16
41 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16
Total: -1.00 -67.94 291.37 1.12 -66.82
By element:
Atomic # 1 Polarization: 16.56 SS G_CDS: 0.35 Total: 16.91 kcal
Atomic # 6 Polarization: -26.73 SS G_CDS: 3.64 Total: -23.09 kcal
Atomic # 7 Polarization: -80.32 SS G_CDS: -3.30 Total: -83.62 kcal
Atomic # 8 Polarization: -23.99 SS G_CDS: -1.59 Total: -25.58 kcal
Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal
Total: -67.94 1.12 -66.82 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260813432.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.709 kcal
(2) G-P(sol) polarization free energy of solvation -67.937 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.228 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.122 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.816 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.106 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds