Wall clock time and date at job start Mon Mar 30 2020 03:24:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46887 * 1
3 3 C 1.39785 * 111.00362 * 2 1
4 4 C 1.54436 * 111.76434 * 189.13609 * 3 2 1
5 5 C 1.50751 * 109.03003 * 282.60943 * 4 3 2
6 6 C 1.52993 * 108.85618 * 332.20150 * 5 4 3
7 7 C 1.53000 * 108.85274 * 213.81859 * 5 4 3
8 8 C 1.54167 * 112.61128 * 93.01308 * 5 4 3
9 9 C 1.53815 * 111.97344 * 318.47752 * 8 5 4
10 10 H 1.09002 * 109.04845 * 79.59606 * 9 8 5
11 11 O 1.42897 * 109.05087 * 198.56598 * 9 8 5
12 12 C 1.47639 * 110.99933 * 128.90130 * 2 1 3
13 13 H 1.09001 * 109.74642 * 269.95811 * 12 2 1
14 14 C 1.52992 * 109.74507 * 30.68716 * 12 2 1
15 15 C 1.50698 * 109.47595 * 62.16289 * 14 12 2
16 16 H 1.08003 * 119.99652 * 354.73499 * 15 14 12
17 17 C 1.37879 * 120.00031 * 174.73638 * 15 14 12
18 18 N 1.31512 * 120.00299 * 359.97438 * 17 15 14
19 19 Si 1.86800 * 119.99590 * 179.97438 * 17 15 14
20 20 H 1.48497 * 109.47198 * 60.00131 * 19 17 15
21 21 H 1.48504 * 109.46879 * 179.97438 * 19 17 15
22 22 H 1.48492 * 109.47346 * 299.99565 * 19 17 15
23 23 H 1.09008 * 109.47508 * 52.22854 * 1 2 3
24 24 H 1.09000 * 109.47561 * 172.22657 * 1 2 3
25 25 H 1.09001 * 109.47698 * 292.22777 * 1 2 3
26 26 H 1.08995 * 109.02133 * 68.54116 * 3 2 1
27 27 H 1.09003 * 109.01285 * 309.72063 * 3 2 1
28 28 H 1.09005 * 109.54196 * 162.74137 * 4 3 2
29 29 H 1.08999 * 109.61759 * 42.52500 * 4 3 2
30 30 H 1.09001 * 109.47726 * 162.89200 * 6 5 4
31 31 H 1.08998 * 109.47751 * 282.89682 * 6 5 4
32 32 H 1.09009 * 109.47360 * 42.89556 * 6 5 4
33 33 H 1.08998 * 109.47255 * 296.91395 * 7 5 4
34 34 H 1.09004 * 109.47418 * 56.91086 * 7 5 4
35 35 H 1.08997 * 109.47408 * 176.91098 * 7 5 4
36 36 H 1.09005 * 108.98158 * 197.84000 * 8 5 4
37 37 H 1.08998 * 108.91432 * 79.08113 * 8 5 4
38 38 H 0.96698 * 114.00283 * 301.02311 * 11 9 8
39 39 H 1.09003 * 109.46888 * 182.16517 * 14 12 2
40 40 H 1.09005 * 109.47467 * 302.15671 * 14 12 2
41 41 H 0.96998 * 120.00176 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4689 0.0000 0.0000
3 6 1.9699 1.3050 0.0000
4 6 3.4971 1.3320 -0.2277
5 6 4.1921 0.9509 1.0546
6 6 3.3000 1.3399 2.2350
7 6 5.5063 1.7281 1.1545
8 6 4.4981 -0.5578 1.1372
9 6 3.3284 -1.4115 0.6186
10 1 3.3541 -1.4257 -0.4711
11 8 3.4738 -2.7470 1.1057
12 6 1.9979 -0.8656 1.0727
13 1 2.1306 -0.2829 1.9843
14 6 1.0271 -2.0192 1.3320
15 6 0.9031 -2.8609 0.0882
16 1 1.3933 -2.5525 -0.8235
17 6 0.1640 -4.0245 0.1140
18 7 -0.4325 -4.4002 1.2243
19 14 0.0098 -5.0674 -1.4281
20 1 1.3589 -5.5089 -1.8640
21 1 -0.8305 -6.2572 -1.1390
22 1 -0.6212 -4.2655 -2.5069
23 1 -0.3634 0.6295 -0.8124
24 1 -0.3634 -1.0182 -0.1390
25 1 -0.3634 0.3887 0.9513
26 1 1.7453 1.7717 0.9590
27 1 1.4824 1.8725 -0.7927
28 1 3.8038 2.3350 -0.5247
29 1 3.7629 0.6226 -1.0114
30 1 3.6308 0.8125 3.1298
31 1 3.3660 2.4150 2.4017
32 1 2.2673 1.0692 2.0147
33 1 6.1625 1.4394 0.3335
34 1 5.3014 2.7972 1.0971
35 1 5.9911 1.5016 2.1041
36 1 4.6973 -0.8229 2.1756
37 1 5.3850 -0.7717 0.5407
38 1 4.3000 -3.1744 0.8413
39 1 1.4030 -2.6333 2.1504
40 1 0.0491 -1.6182 1.5984
41 1 -0.9527 -5.2187 1.2423
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260813437.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:24:16
Heat of formation + Delta-G solvation = -14.017716 kcal
Electronic energy + Delta-G solvation = -19585.468897 eV
Core-core repulsion = 16887.754218 eV
Total energy + Delta-G solvation = -2697.714679 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.33718 -35.93997 -35.74366 -32.69269 -30.75506 -28.85774 -28.07237 -27.48853
-25.52013 -23.88893 -22.03700 -21.96164 -18.81659 -18.15666 -16.54935 -15.99912
-15.56431 -15.10766 -14.54355 -14.32436 -14.13251 -13.47651 -13.29584 -12.53875
-12.52167 -12.35284 -12.08223 -11.82857 -11.66038 -11.38878 -11.11842 -10.87783
-10.74143 -10.66412 -10.42694 -10.34333 -10.22474 -10.16977 -9.93143 -9.66640
-9.12556 -8.85955 -8.61891 -8.13214 -7.17518 -5.76434 -3.70791 3.45910
3.49926 3.53020 4.56967 4.66261 4.84260 4.93641 5.01510 5.39635
5.46947 5.57301 5.63115 5.70224 5.73224 5.77489 5.79974 5.91292
5.99695 6.03073 6.07411 6.18446 6.24340 6.28778 6.31429 6.40988
6.45562 6.49888 6.65679 6.72955 6.91620 6.97664 7.21189 7.72765
7.81389 8.11833 8.22379 8.35399 8.65623 8.71639 9.31940 9.86961
11.35948
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.032942 B = 0.008129 C = 0.007540
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 849.786655 B = 3443.674780 C = 3712.624672
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 N -0.546 5.546
3 C 0.060 3.940
4 C -0.108 4.108
5 C -0.059 4.059
6 C -0.173 4.173
7 C -0.139 4.139
8 C -0.144 4.144
9 C 0.128 3.872
10 H 0.056 0.944
11 O -0.531 6.531
12 C 0.086 3.914
13 H 0.052 0.948
14 C 0.029 3.971
15 C -0.466 4.466
16 H 0.058 0.942
17 C 0.050 3.950
18 N -0.905 5.905
19 Si 0.885 3.115
20 H -0.281 1.281
21 H -0.293 1.293
22 H -0.281 1.281
23 H 0.043 0.957
24 H 0.111 0.889
25 H 0.009 0.991
26 H 0.030 0.970
27 H 0.058 0.942
28 H 0.061 0.939
29 H 0.071 0.929
30 H 0.050 0.950
31 H 0.046 0.954
32 H 0.093 0.907
33 H 0.051 0.949
34 H 0.051 0.949
35 H 0.050 0.950
36 H 0.063 0.937
37 H 0.052 0.948
38 H 0.351 0.649
39 H 0.034 0.966
40 H 0.010 0.990
41 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.880 11.547 -0.677 14.582
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 N -0.271 5.271
3 C -0.070 4.070
4 C -0.146 4.146
5 C -0.059 4.059
6 C -0.229 4.229
7 C -0.196 4.196
8 C -0.182 4.182
9 C 0.069 3.931
10 H 0.074 0.926
11 O -0.332 6.332
12 C -0.020 4.020
13 H 0.069 0.931
14 C -0.008 4.008
15 C -0.505 4.505
16 H 0.076 0.924
17 C -0.149 4.149
18 N -0.546 5.546
19 Si 0.714 3.286
20 H -0.207 1.207
21 H -0.219 1.219
22 H -0.207 1.207
23 H 0.062 0.938
24 H 0.129 0.871
25 H 0.027 0.973
26 H 0.047 0.953
27 H 0.076 0.924
28 H 0.079 0.921
29 H 0.090 0.910
30 H 0.069 0.931
31 H 0.065 0.935
32 H 0.111 0.889
33 H 0.070 0.930
34 H 0.070 0.930
35 H 0.069 0.931
36 H 0.082 0.918
37 H 0.071 0.929
38 H 0.195 0.805
39 H 0.052 0.948
40 H 0.028 0.972
41 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges 8.340 11.356 -0.739 14.108
hybrid contribution 0.377 -0.347 -0.406 0.654
sum 8.717 11.009 -1.145 14.089
Atomic orbital electron populations
1.22504 0.86377 1.05286 0.97514 1.58443 1.08106 1.11116 1.49460
1.21205 0.94887 0.91202 0.99666 1.21559 0.94957 1.00867 0.97204
1.20218 0.95044 0.94774 0.95874 1.22865 1.02321 1.00230 0.97514
1.21987 0.96975 0.99387 1.01248 1.22910 0.99308 0.94338 1.01607
1.21358 0.92861 0.81640 0.97287 0.92594 1.86961 1.41984 1.26859
1.77392 1.21790 0.94941 0.94927 0.90316 0.93053 1.19221 0.91959
0.91319 0.98267 1.20955 1.28224 1.05125 0.96181 0.92429 1.24956
0.96741 0.97731 0.95438 1.69952 1.34536 1.24009 1.26110 0.86780
0.77652 0.79948 0.84186 1.20703 1.21867 1.20679 0.93810 0.87096
0.97265 0.95292 0.92391 0.92081 0.90987 0.93080 0.93464 0.88876
0.92982 0.92972 0.93101 0.91845 0.92877 0.80516 0.94791 0.97169
0.93522
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.59 8.21 60.06 0.49 1.08 16
2 N -0.55 -10.43 3.87 -240.26 -0.93 -11.36 16
3 C 0.06 0.94 4.83 -6.74 -0.03 0.91 16
4 C -0.11 -1.50 5.03 -27.11 -0.14 -1.64 16
5 C -0.06 -0.80 0.72 -155.03 -0.11 -0.91 16
6 C -0.17 -2.42 6.47 37.15 0.24 -2.18 16
7 C -0.14 -1.56 7.99 37.16 0.30 -1.26 16
8 C -0.14 -2.18 4.50 -25.70 -0.12 -2.29 16
9 C 0.13 2.45 2.12 -27.40 -0.06 2.39 16
10 H 0.06 1.15 7.02 -51.93 -0.36 0.78 16
11 O -0.53 -11.15 10.68 -35.23 -0.38 -11.53 16
12 C 0.09 1.78 2.05 -68.41 -0.14 1.64 16
13 H 0.05 1.03 4.01 -51.93 -0.21 0.82 16
14 C 0.03 0.75 3.71 -27.89 -0.10 0.65 16
15 C -0.47 -12.82 5.57 -34.44 -0.19 -13.02 16
16 H 0.06 1.60 7.16 -52.48 -0.38 1.23 16
17 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16
18 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16
19 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16
20 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16
21 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16
22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16
23 H 0.04 0.75 7.88 -51.92 -0.41 0.34 16
24 H 0.11 2.58 5.05 -51.93 -0.26 2.32 16
25 H 0.01 0.17 7.96 -51.93 -0.41 -0.24 16
26 H 0.03 0.45 4.97 -51.93 -0.26 0.19 16
27 H 0.06 0.85 7.83 -51.93 -0.41 0.45 16
28 H 0.06 0.73 7.64 -51.93 -0.40 0.33 16
29 H 0.07 1.09 7.11 -51.93 -0.37 0.72 16
30 H 0.05 0.72 7.65 -51.93 -0.40 0.32 16
31 H 0.05 0.58 7.98 -51.93 -0.41 0.16 16
32 H 0.09 1.48 2.69 -51.92 -0.14 1.34 16
33 H 0.05 0.55 8.12 -51.93 -0.42 0.13 16
34 H 0.05 0.53 8.00 -51.93 -0.42 0.12 16
35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
36 H 0.06 0.98 7.66 -51.93 -0.40 0.58 16
37 H 0.05 0.73 7.96 -51.93 -0.41 0.31 16
38 H 0.35 5.74 9.07 45.56 0.41 6.15 16
39 H 0.03 0.98 7.47 -51.93 -0.39 0.59 16
40 H 0.01 0.28 6.36 -51.93 -0.33 -0.05 16
41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16
LS Contribution 291.38 15.07 4.39 4.39
Total: -1.00 -30.54 291.38 -7.08 -37.63
By element:
Atomic # 1 Polarization: 9.63 SS G_CDS: -5.92 Total: 3.71 kcal
Atomic # 6 Polarization: -13.32 SS G_CDS: 0.04 Total: -13.28 kcal
Atomic # 7 Polarization: -37.96 SS G_CDS: -0.19 Total: -38.15 kcal
Atomic # 8 Polarization: -11.15 SS G_CDS: -0.38 Total: -11.53 kcal
Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal
Total LS contribution 4.39 Total: 4.39 kcal
Total: -30.54 -7.08 -37.63 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260813437.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.608 kcal
(2) G-P(sol) polarization free energy of solvation -30.544 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.936 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.082 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.626 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.018 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds