Wall clock time and date at job start Mon Mar 30 2020 03:24:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46887 * 1
3 3 C 1.39785 * 111.00362 * 2 1
4 4 C 1.54436 * 111.76434 * 189.13609 * 3 2 1
5 5 C 1.50751 * 109.03003 * 282.60943 * 4 3 2
6 6 C 1.52993 * 108.85618 * 332.20150 * 5 4 3
7 7 C 1.53000 * 108.85274 * 213.81859 * 5 4 3
8 8 C 1.54167 * 112.61128 * 93.01308 * 5 4 3
9 9 C 1.53815 * 111.97344 * 318.47752 * 8 5 4
10 10 H 1.09002 * 109.04845 * 79.59606 * 9 8 5
11 11 O 1.42897 * 109.05087 * 198.56598 * 9 8 5
12 12 C 1.47639 * 110.99933 * 128.90130 * 2 1 3
13 13 H 1.09001 * 109.74642 * 269.95811 * 12 2 1
14 14 C 1.52992 * 109.74507 * 30.68716 * 12 2 1
15 15 C 1.50698 * 109.47595 * 62.16289 * 14 12 2
16 16 H 1.08003 * 119.99652 * 354.73499 * 15 14 12
17 17 C 1.37879 * 120.00031 * 174.73638 * 15 14 12
18 18 N 1.31512 * 120.00299 * 359.97438 * 17 15 14
19 19 Si 1.86800 * 119.99590 * 179.97438 * 17 15 14
20 20 H 1.48497 * 109.47198 * 60.00131 * 19 17 15
21 21 H 1.48504 * 109.46879 * 179.97438 * 19 17 15
22 22 H 1.48492 * 109.47346 * 299.99565 * 19 17 15
23 23 H 1.09008 * 109.47508 * 52.22854 * 1 2 3
24 24 H 1.09000 * 109.47561 * 172.22657 * 1 2 3
25 25 H 1.09001 * 109.47698 * 292.22777 * 1 2 3
26 26 H 1.08995 * 109.02133 * 68.54116 * 3 2 1
27 27 H 1.09003 * 109.01285 * 309.72063 * 3 2 1
28 28 H 1.09005 * 109.54196 * 162.74137 * 4 3 2
29 29 H 1.08999 * 109.61759 * 42.52500 * 4 3 2
30 30 H 1.09001 * 109.47726 * 162.89200 * 6 5 4
31 31 H 1.08998 * 109.47751 * 282.89682 * 6 5 4
32 32 H 1.09009 * 109.47360 * 42.89556 * 6 5 4
33 33 H 1.08998 * 109.47255 * 296.91395 * 7 5 4
34 34 H 1.09004 * 109.47418 * 56.91086 * 7 5 4
35 35 H 1.08997 * 109.47408 * 176.91098 * 7 5 4
36 36 H 1.09005 * 108.98158 * 197.84000 * 8 5 4
37 37 H 1.08998 * 108.91432 * 79.08113 * 8 5 4
38 38 H 0.96698 * 114.00283 * 301.02311 * 11 9 8
39 39 H 1.09003 * 109.46888 * 182.16517 * 14 12 2
40 40 H 1.09005 * 109.47467 * 302.15671 * 14 12 2
41 41 H 0.96998 * 120.00176 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4689 0.0000 0.0000
3 6 1.9699 1.3050 0.0000
4 6 3.4971 1.3320 -0.2277
5 6 4.1921 0.9509 1.0546
6 6 3.3000 1.3399 2.2350
7 6 5.5063 1.7281 1.1545
8 6 4.4981 -0.5578 1.1372
9 6 3.3284 -1.4115 0.6186
10 1 3.3541 -1.4257 -0.4711
11 8 3.4738 -2.7470 1.1057
12 6 1.9979 -0.8656 1.0727
13 1 2.1306 -0.2829 1.9843
14 6 1.0271 -2.0192 1.3320
15 6 0.9031 -2.8609 0.0882
16 1 1.3933 -2.5525 -0.8235
17 6 0.1640 -4.0245 0.1140
18 7 -0.4325 -4.4002 1.2243
19 14 0.0098 -5.0674 -1.4281
20 1 1.3589 -5.5089 -1.8640
21 1 -0.8305 -6.2572 -1.1390
22 1 -0.6212 -4.2655 -2.5069
23 1 -0.3634 0.6295 -0.8124
24 1 -0.3634 -1.0182 -0.1390
25 1 -0.3634 0.3887 0.9513
26 1 1.7453 1.7717 0.9590
27 1 1.4824 1.8725 -0.7927
28 1 3.8038 2.3350 -0.5247
29 1 3.7629 0.6226 -1.0114
30 1 3.6308 0.8125 3.1298
31 1 3.3660 2.4150 2.4017
32 1 2.2673 1.0692 2.0147
33 1 6.1625 1.4394 0.3335
34 1 5.3014 2.7972 1.0971
35 1 5.9911 1.5016 2.1041
36 1 4.6973 -0.8229 2.1756
37 1 5.3850 -0.7717 0.5407
38 1 4.3000 -3.1744 0.8413
39 1 1.4030 -2.6333 2.1504
40 1 0.0491 -1.6182 1.5984
41 1 -0.9527 -5.2187 1.2423
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260813437.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:24:16
Heat of formation + Delta-G solvation = -35.740759 kcal
Electronic energy + Delta-G solvation = -19586.410879 eV
Core-core repulsion = 16887.754218 eV
Total energy + Delta-G solvation = -2698.656661 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-41.69758 -37.41573 -37.19727 -34.74256 -32.46231 -30.17458 -29.63894 -28.67360
-27.03802 -25.60214 -23.67766 -23.36646 -20.48929 -19.32373 -18.33595 -17.76902
-16.94078 -16.68386 -16.25040 -15.77497 -15.65504 -14.82181 -14.69541 -14.19555
-13.92436 -13.88497 -13.35514 -13.29224 -13.07117 -12.87061 -12.66724 -12.51895
-12.31154 -12.24717 -12.10466 -11.84377 -11.64339 -11.49763 -11.29322 -11.19270
-11.03303 -10.71596 -10.37337 -10.20761 -8.67278 -7.98951 -5.98886 1.43062
1.45395 1.52292 2.52789 3.09823 3.36090 3.67802 3.86924 3.89614
4.07435 4.22332 4.29040 4.53471 4.54422 4.57966 4.62025 4.72983
4.77308 4.81165 4.86673 4.90780 5.02381 5.04574 5.07979 5.18919
5.21829 5.27352 5.32854 5.47754 5.52522 5.53383 5.60160 5.64522
5.76852 5.96018 6.41456 6.50173 6.90260 7.09619 7.27035 7.62206
9.13728
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.032942 B = 0.008129 C = 0.007540
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 849.786655 B = 3443.674780 C = 3712.624672
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.035 3.965
2 N -0.552 5.552
3 C 0.052 3.948
4 C -0.102 4.102
5 C -0.060 4.060
6 C -0.171 4.171
7 C -0.133 4.133
8 C -0.134 4.134
9 C 0.130 3.870
10 H 0.041 0.959
11 O -0.564 6.564
12 C 0.092 3.908
13 H 0.061 0.939
14 C 0.039 3.961
15 C -0.453 4.453
16 H 0.054 0.946
17 C -0.009 4.009
18 N -0.945 5.945
19 Si 0.949 3.051
20 H -0.275 1.275
21 H -0.292 1.292
22 H -0.271 1.271
23 H 0.070 0.930
24 H 0.068 0.932
25 H 0.009 0.991
26 H 0.038 0.962
27 H 0.072 0.928
28 H 0.090 0.910
29 H 0.060 0.940
30 H 0.045 0.955
31 H 0.068 0.932
32 H 0.070 0.930
33 H 0.060 0.940
34 H 0.067 0.933
35 H 0.054 0.946
36 H 0.059 0.941
37 H 0.072 0.928
38 H 0.370 0.630
39 H -0.007 1.007
40 H -0.013 1.013
41 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.619 13.478 -1.948 17.269
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 N -0.277 5.277
3 C -0.077 4.077
4 C -0.140 4.140
5 C -0.060 4.060
6 C -0.227 4.227
7 C -0.190 4.190
8 C -0.171 4.171
9 C 0.071 3.929
10 H 0.059 0.941
11 O -0.368 6.368
12 C -0.015 4.015
13 H 0.078 0.922
14 C 0.002 3.998
15 C -0.492 4.492
16 H 0.072 0.928
17 C -0.203 4.203
18 N -0.588 5.588
19 Si 0.776 3.224
20 H -0.200 1.200
21 H -0.219 1.219
22 H -0.197 1.197
23 H 0.089 0.911
24 H 0.087 0.913
25 H 0.027 0.973
26 H 0.055 0.945
27 H 0.091 0.909
28 H 0.108 0.892
29 H 0.079 0.921
30 H 0.064 0.936
31 H 0.087 0.913
32 H 0.088 0.912
33 H 0.079 0.921
34 H 0.086 0.914
35 H 0.073 0.927
36 H 0.078 0.922
37 H 0.091 0.909
38 H 0.216 0.784
39 H 0.011 0.989
40 H 0.005 0.995
41 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges 10.103 13.304 -2.029 16.828
hybrid contribution -0.182 -0.905 0.018 0.923
sum 9.921 12.399 -2.011 16.006
Atomic orbital electron populations
1.22341 0.87138 1.03126 0.98586 1.58481 1.07615 1.13077 1.48547
1.21372 0.96445 0.89185 1.00650 1.21548 0.93317 1.02249 0.96893
1.20250 0.96489 0.93686 0.95540 1.22792 1.00797 1.01605 0.97505
1.21921 0.95347 0.99832 1.01873 1.22777 0.97937 0.95022 1.01403
1.21354 0.93562 0.81607 0.96374 0.94075 1.86901 1.43762 1.28318
1.77847 1.21637 0.94449 0.93641 0.91754 0.92151 1.19002 0.91967
0.92550 0.96260 1.21083 1.26875 1.04905 0.96331 0.92766 1.25758
0.96843 0.99357 0.98379 1.70100 1.35846 1.24579 1.28319 0.85742
0.77771 0.78208 0.80638 1.20010 1.21853 1.19674 0.91096 0.91311
0.97281 0.94484 0.90941 0.89168 0.92138 0.93622 0.91267 0.91195
0.92113 0.91401 0.92735 0.92204 0.90913 0.78414 0.98895 0.99464
0.93761
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.39 8.21 127.69 1.05 2.44 16
2 N -0.55 -20.72 3.87 -914.04 -3.54 -24.26 16
3 C 0.05 1.51 4.83 88.07 0.43 1.93 16
4 C -0.10 -2.50 5.03 30.35 0.15 -2.34 16
5 C -0.06 -1.43 0.72 -52.52 -0.04 -1.47 16
6 C -0.17 -4.35 6.47 71.98 0.47 -3.88 16
7 C -0.13 -2.40 7.99 71.98 0.57 -1.82 16
8 C -0.13 -3.78 4.50 31.26 0.14 -3.64 16
9 C 0.13 4.94 2.12 30.16 0.06 5.01 16
10 H 0.04 1.67 7.02 -2.39 -0.02 1.65 16
11 O -0.56 -24.08 10.68 -148.98 -1.59 -25.67 16
12 C 0.09 3.83 2.05 44.06 0.09 3.92 16
13 H 0.06 2.43 4.01 -2.39 -0.01 2.42 16
14 C 0.04 2.11 3.71 29.84 0.11 2.22 16
15 C -0.45 -25.64 5.57 25.60 0.14 -25.50 16
16 H 0.05 3.06 7.16 -2.91 -0.02 3.04 16
17 C -0.01 -0.51 5.46 84.66 0.46 -0.05 16
18 N -0.94 -59.57 13.29 21.45 0.28 -59.28 16
19 Si 0.95 46.44 29.54 68.60 2.03 48.46 16
20 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16
21 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16
22 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16
23 H 0.07 2.35 7.88 -2.38 -0.02 2.33 16
24 H 0.07 3.29 5.05 -2.39 -0.01 3.28 16
25 H 0.01 0.34 7.96 -2.39 -0.02 0.32 16
26 H 0.04 1.06 4.97 -2.39 -0.01 1.04 16
27 H 0.07 1.90 7.83 -2.39 -0.02 1.88 16
28 H 0.09 1.72 7.64 -2.38 -0.02 1.70 16
29 H 0.06 1.65 7.11 -2.39 -0.02 1.63 16
30 H 0.04 1.20 7.65 -2.39 -0.02 1.18 16
31 H 0.07 1.45 7.98 -2.39 -0.02 1.43 16
32 H 0.07 2.12 2.69 -2.38 -0.01 2.11 16
33 H 0.06 1.01 8.12 -2.39 -0.02 0.99 16
34 H 0.07 1.04 8.00 -2.38 -0.02 1.03 16
35 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16
36 H 0.06 1.75 7.66 -2.38 -0.02 1.73 16
37 H 0.07 1.78 7.96 -2.39 -0.02 1.76 16
38 H 0.37 12.08 9.07 -74.06 -0.67 11.41 16
39 H -0.01 -0.45 7.47 -2.39 -0.02 -0.47 16
40 H -0.01 -0.73 6.36 -2.38 -0.02 -0.75 16
41 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16
Total: -1.00 -67.81 291.38 1.16 -66.64
By element:
Atomic # 1 Polarization: 16.95 SS G_CDS: 0.34 Total: 17.29 kcal
Atomic # 6 Polarization: -26.82 SS G_CDS: 3.64 Total: -23.18 kcal
Atomic # 7 Polarization: -80.29 SS G_CDS: -3.25 Total: -83.55 kcal
Atomic # 8 Polarization: -24.08 SS G_CDS: -1.59 Total: -25.67 kcal
Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.46 kcal
Total: -67.81 1.16 -66.64 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260813437.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.902 kcal
(2) G-P(sol) polarization free energy of solvation -67.807 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.905 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.164 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.642 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.741 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds